Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7F8o	31491	2024-11-19	2021-07-02	3.6	3.69	3.45	3.7	0.008	0.88	0.0	0.04	15.89	0.00	2.029	8.68	0.71	4.6	95.4	0.0	0.47	0.61	0.82	3.06	3.6	0.003	0.69	0.0	0.04	16.75	0.00	2.370	11.49	2.34	4.8	95.2	0.0	0.15	0.97	0.60	0.82	2.40	18032	2184	14	0	21	0	0	logfile
✔	7F8N	31490	2024-11-19	2021-07-02	3.4	3.52	3.33	3.5	0.012	1.08	0.0	0.04	18.97	0.01	2.219	10.34	2.55	4.7	95.3	0.0	-0.91	0.62	0.81	2.45	3.5	0.003	0.59	0.0	0.04	16.40	0.00	2.459	11.47	2.23	3.7	96.3	0.0	-0.25	0.46	0.60	0.84	2.12	18522	2163	14	0	49	0	0	logfile
✔	7RAV	24387	2024-11-14	2021-07-02	3.3	2.69	3.21	2.4	0.004	0.93	0.0	0.05	15.92	0.01	2.224	16.68	1.17	16.7	82.9	0.4	-3.36	0.72	0.71	2.18	2.2	0.004	0.80	0.0	0.05	17.73	0.00	2.400	12.55	2.93	15.4	84.4	0.1	-2.66	0.44	0.73	0.73	2.09	6215	773	2	0	1	0	0	logfile
✔	7P1i	13161	2024-11-14	2021-07-01	3.15	4.49	3.18	4.4	0.002	0.57	0.0	0.04	11.18	0.00	2.265	8.39	5.90	4.3	95.7	0.0	3.38	0.55	0.71	0.60	4.4	0.003	1.06	0.0	0.05	15.03	0.00	2.450	17.72	2.25	5.3	94.7	0.0	0.70	0.94	0.56	0.73	0.43	6644	884	2	0	0	0	0	logfile
✔	7RAi	24362	2024-11-20	2021-07-01	3.24	3.65	—	3.5	0.008	0.88	0.0	0.06	19.83	0.00	2.199	10.07	7.69	8.7	91.3	0.0	-4.72	0.79	0.83	2.74	3.5	0.003	0.72	0.0	0.05	14.86	0.00	2.465	6.01	3.72	5.1	94.9	0.0	-1.95	1.56	0.83	0.87	2.54	20652	2424	54	0	132	0	0	logfile
✔	7P1J	13162	2024-11-14	2021-07-01	3.04	4.02	2.96	4.0	0.002	0.48	0.0	0.03	8.89	0.00	2.305	5.96	2.29	3.5	96.5	0.0	2.14	0.65	0.71	0.64	4.0	0.003	0.84	0.0	0.04	14.60	0.00	2.432	12.51	3.44	5.7	94.3	0.0	1.13	1.40	0.66	0.72	0.72	6502	868	2	0	0	0	0	logfile
✔	7P1K	13163	2024-11-15	2021-07-01	3.64	3.10	3.45	3.2	0.014	1.12	0.0	0.05	16.20	0.02	2.023	12.65	4.61	4.2	95.8	0.0	-0.19	0.54	0.70	1.60	3.2	0.002	0.63	0.0	0.04	15.13	0.00	2.438	6.22	3.89	4.8	95.2	0.0	1.68	1.24	0.56	0.70	1.85	6892	866	4	0	12	0	0	logfile
✔	7P0Z	13153	2024-11-17	2021-07-01	2.43	2.02	2.41	2.2	0.016	0.94	0.0	0.06	14.02	0.01	2.141	7.29	0.00	4.3	95.7	0.0	1.90	0.83	0.86	2.91	2.3	0.003	0.52	0.0	0.03	18.17	0.00	2.559	2.88	2.01	0.7	99.3	0.0	5.25	0.54	0.84	0.87	2.05	12873	1652	7	0	0	0	0	logfile
✔	7P13	13154	2024-11-17	2021-07-01	2.29	1.96	2.28	1.7	0.016	1.06	0.0	0.07	14.07	0.01	2.430	5.24	0.00	3.3	96.7	0.0	2.06	0.82	0.87	4.22	2.1	0.002	0.44	0.0	0.03	17.09	0.00	2.472	15.03	1.44	2.3	97.7	0.0	5.41	0.51	0.83	0.87	3.25	13727	1743	7	0	0	0	154	logfile
✔	7P15	13156	2024-11-15	2021-07-01	3.58	3.46	3.56	3.5	0.006	0.94	2.0	0.07	16.29	0.01	2.182	8.93	0.23	4.0	96.0	0.0	-1.15	0.62	0.71	2.09	3.5	0.004	0.66	0.0	0.04	17.83	0.00	2.488	10.41	1.29	3.4	96.6	0.0	-0.07	0.41	0.63	0.72	1.83	8587	969	4	34	1	0	0	logfile
✔	7P16	13157	2024-11-14	2021-07-01	4.3	4.40	3.53	4.3	0.004	0.73	0.0	0.04	16.47	0.00	2.178	7.56	0.00	2.5	97.5	0.0	-0.08	0.65	0.77	—	4.3	0.003	0.72	0.0	0.04	15.12	0.00	2.614	10.03	0.00	3.2	96.8	0.0	0.68	1.45	0.64	0.76	—	3621	444	3	0	1	0	0	logfile
✔	7P03	13142	2024-11-20	2021-06-29	3.45	3.78	—	3.7	0.006	0.68	0.0	0.04	13.86	0.00	1.801	6.52	0.00	5.4	94.6	0.0	-0.70	0.62	0.71	1.37	3.7	0.003	0.53	0.0	0.04	15.92	0.00	2.419	4.49	0.87	3.6	96.4	0.0	0.83	0.87	0.63	0.77	1.92	21149	1333	1	0	0	0	10498	logfile
✔	7F7F	31487	2024-11-16	2021-06-29	3.81	3.37	—	3.8	0.008	1.12	0.0	0.06	13.55	0.01	2.121	6.53	0.31	9.6	90.3	0.1	-5.60	0.64	0.70	2.89	3.7	0.004	0.76	0.0	0.05	14.60	0.00	2.065	12.48	3.54	9.2	90.8	0.0	-3.30	1.20	0.64	0.71	2.08	12076	1497	6	0	8	0	0	logfile
✔	7R9U	24331	2024-11-14	2021-06-29	4.4	5.41	—	4.3	0.002	0.34	0.0	0.04	4.36	0.00	2.248	3.50	0.00	9.1	90.3	0.6	-4.49	0.78	0.62	—	4.3	0.003	0.57	0.0	0.04	9.23	0.00	2.353	6.86	0.00	4.6	95.4	0.0	0.33	2.39	0.91	0.84	—	7727	505	1	0	0	0	3939	logfile
✔	7P00	13140	2024-11-15	2021-06-29	2.71	2.90	—	3.0	0.012	1.68	8.0	0.11	12.35	0.01	2.236	4.97	0.81	3.4	96.6	0.0	-0.50	0.68	0.82	3.71	3.0	0.005	0.65	0.0	0.05	16.00	0.00	2.556	7.24	2.94	2.2	97.8	0.0	0.63	0.68	0.69	0.86	4.08	9110	1144	8	0	2	0	0	logfile
✔	7P02	13141	2024-11-15	2021-06-29	2.87	3.05	—	3.1	0.012	1.51	0.0	0.10	11.73	0.00	2.086	6.28	1.12	4.6	95.4	0.0	-1.72	0.66	0.81	3.20	3.1	0.006	0.73	0.0	0.05	15.45	0.00	2.462	10.00	3.06	2.4	97.6	0.0	0.38	0.72	0.66	0.85	3.67	9062	1138	8	0	2	0	0	logfile
✔	7R9M	24329	2024-11-15	2021-06-29	4.0	4.58	—	3.9	0.002	0.38	0.0	0.04	4.68	0.00	2.214	3.88	0.00	8.3	90.9	0.8	-4.83	0.85	0.77	—	3.9	0.002	0.54	0.0	0.04	9.17	0.00	2.482	4.79	0.25	2.2	97.8	0.0	-0.26	1.71	0.86	0.79	—	7727	505	1	0	0	0	3939	logfile
✔	7R9E	24324	2024-11-14	2021-06-29	4.0	4.83	—	3.9	0.002	0.37	0.0	0.04	4.45	0.00	2.277	3.11	0.00	9.9	88.7	1.4	-3.58	0.87	0.80	—	3.9	0.003	0.63	0.0	0.04	9.41	0.00	2.404	7.64	0.00	6.0	94.0	0.0	-0.48	2.08	0.88	0.82	—	7726	505	1	0	0	0	3938	logfile
✔	7R9K	24328	2024-11-14	2021-06-29	4.1	4.93	—	4.0	0.002	0.35	0.0	0.04	4.65	0.00	2.223	3.24	0.00	10.3	89.1	0.6	-4.05	0.83	0.71	—	4.1	0.003	0.54	0.0	0.04	8.46	0.00	2.435	6.09	0.00	4.8	95.2	0.0	-0.21	1.78	0.89	0.83	—	7726	505	1	0	0	0	3938	logfile
✔	7RA3	24334	2024-11-16	2021-06-29	3.24	3.47	—	3.3	0.005	0.91	0.0	0.05	13.68	0.00	2.074	6.99	0.35	7.1	92.9	0.0	-1.87	0.69	0.80	2.16	3.3	0.003	0.75	0.0	0.04	15.97	0.00	2.461	10.70	2.99	4.7	95.3	0.0	-0.72	0.84	0.69	0.82	1.44	10802	1381	7	0	0	0	0	logfile

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