Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7P00	13140	2024-11-15	2021-06-29	2.71	2.90	—	3.0	0.012	1.68	8.0	0.11	12.35	0.01	2.236	4.97	0.81	3.4	96.6	0.0	-0.50	0.68	0.82	3.71	3.0	0.005	0.65	0.0	0.05	16.00	0.00	2.556	7.24	2.94	2.2	97.8	0.0	0.63	0.68	0.69	0.86	4.08	9110	1144	8	0	2	0	0	logfile
✔	7oZN	13129	2024-11-20	2021-06-28	3.5	3.79	3.49	3.7	0.002	0.42	0.0	0.04	14.10	0.00	2.073	4.61	0.00	2.0	98.0	0.0	1.13	0.77	0.72	1.17	3.7	0.004	0.69	0.0	0.05	16.85	0.00	2.348	11.23	2.69	3.2	96.8	0.0	0.03	0.83	0.79	0.78	1.42	54330	6774	32	0	10	0	0	logfile
✔	7R91	24322	2024-11-17	2021-06-28	2.83	3.10	2.89	3.1	0.003	0.55	0.0	0.04	14.98	0.00	2.207	5.01	0.19	2.5	97.5	0.0	0.49	0.61	0.86	3.66	3.0	0.004	0.66	0.0	0.05	15.83	0.00	2.182	4.49	0.65	2.7	97.3	0.0	0.85	0.51	0.60	0.89	3.29	14320	1786	7	0	6	0	0	logfile
✔	7oZS	13134	2024-11-17	2021-06-28	3.5	4.00	—	3.6	0.004	0.79	0.0	0.05	17.90	0.01	2.282	3.82	0.29	3.7	96.3	0.0	-1.44	0.89	0.85	2.18	3.6	0.002	0.56	0.0	0.04	18.67	0.00	2.328	5.98	1.63	3.3	96.7	0.0	1.85	0.35	0.89	0.85	1.83	12770	1314	7	119	23	0	0	logfile
✔	7oZG	13123	2024-11-14	2021-06-28	3.3	3.21	2.71	3.6	0.023	1.83	0.0	0.10	12.75	0.01	2.254	17.09	0.00	8.7	91.3	0.0	-4.01	0.40	0.73	3.72	3.7	0.005	0.78	0.0	0.05	15.31	0.00	2.591	15.91	8.98	12.2	87.8	0.0	-4.37	1.63	0.34	0.68	5.01	4960	730	10	0	0	0	0	logfile
✔	7oZH	13124	2024-11-14	2021-06-28	3.02	3.20	1.84	3.3	0.024	1.40	0.0	0.09	7.44	0.01	2.546	14.72	0.00	5.4	94.6	0.0	-2.78	0.33	0.60	4.68	3.2	0.004	0.72	0.0	0.05	15.26	0.00	2.556	15.60	7.18	10.0	90.0	0.0	-2.38	1.45	0.40	0.69	0.33	3890	580	10	0	0	0	0	logfile
✔	7oZW	13139	2024-11-15	2021-06-28	3.38	3.17	3.40	3.4	0.005	0.84	0.0	0.05	16.83	0.01	2.276	7.68	0.00	3.7	96.3	0.0	-0.27	0.62	0.70	2.53	3.4	0.003	0.62	0.0	0.04	18.29	0.00	2.411	8.35	1.23	3.5	96.5	0.0	0.00	0.38	0.62	0.73	2.18	8407	961	4	34	1	0	0	logfile
✔	7R8V	24321	2024-11-18	2021-06-27	2.82	3.03	2.83	3.0	0.003	0.54	0.0	0.04	14.13	0.00	2.028	5.46	0.00	2.7	97.3	0.0	0.86	0.75	0.89	3.97	2.9	0.004	0.61	0.0	0.05	15.31	0.00	1.976	4.85	1.01	2.6	97.4	0.0	1.05	0.30	0.73	0.89	3.74	14845	1855	10	0	10	0	0	logfile
✔	7R87	24310	2024-11-16	2021-06-26	3.4	3.29	2.98	3.3	0.002	0.44	0.0	0.04	12.08	0.00	2.317	5.75	0.51	3.2	96.8	0.0	-1.48	0.61	0.80	2.20	3.3	0.003	0.62	0.0	0.04	14.50	0.00	2.464	5.71	2.20	4.4	95.6	0.0	1.13	0.69	0.73	0.91	3.39	10793	1369	4	0	0	0	0	logfile
✔	7R8C	24315	2024-11-15	2021-06-26	3.7	4.19	—	4.1	0.002	0.49	0.0	0.04	12.82	0.00	2.073	6.73	0.21	4.8	95.2	0.0	-1.63	0.68	0.85	1.76	4.1	0.003	0.67	0.0	0.04	15.21	0.00	2.610	7.42	2.36	5.5	94.5	0.0	1.18	0.55	0.71	0.87	1.82	8538	1090	2	0	0	0	0	logfile
✔	7R8B	24314	2024-11-16	2021-06-26	3.1	3.48	—	3.3	0.002	0.55	0.0	0.04	13.49	0.00	2.103	6.66	1.94	3.5	96.5	0.0	-1.73	0.67	0.85	2.57	3.3	0.002	0.59	0.0	0.04	14.64	0.00	2.509	4.97	3.12	4.5	95.5	0.0	1.07	0.96	0.73	0.91	2.97	10868	1371	6	0	2	0	0	logfile
✔	7R8A	24313	2024-11-16	2021-06-26	2.9	3.05	—	3.0	0.003	0.57	0.0	0.04	13.81	0.00	2.305	6.32	3.39	4.6	95.3	0.1	-1.64	0.66	0.81	2.32	3.0	0.003	0.61	0.0	0.04	15.89	0.00	2.522	4.62	3.30	5.0	95.0	0.0	1.15	1.00	0.75	0.91	3.05	10530	1332	5	0	1	0	0	logfile
✔	7R8D	24316	2024-11-15	2021-06-26	3.2	3.37	—	3.4	0.002	0.65	0.0	0.05	14.26	0.00	2.202	6.45	1.93	4.5	95.5	0.0	-1.18	0.61	0.83	1.57	3.3	0.004	0.62	0.0	0.04	15.28	0.00	2.592	6.56	4.08	4.5	95.5	0.0	0.67	0.91	0.63	0.87	2.02	8762	1090	4	0	8	0	0	logfile
✔	7R88	24311	2024-11-16	2021-06-26	3.5	3.76	—	3.7	0.002	0.45	0.0	0.04	12.49	0.00	2.274	5.35	1.02	3.5	96.5	0.0	-1.50	0.69	0.85	2.38	3.7	0.002	0.58	0.0	0.04	14.97	0.00	2.421	4.56	2.29	4.1	95.9	0.0	1.46	1.01	0.70	0.88	2.68	10787	1368	4	0	0	0	0	logfile
✔	7F6V	31482	2024-11-14	2021-06-25	3.66	4.27	—	4.2	0.005	0.77	0.0	0.05	13.91	0.00	2.356	10.62	0.00	6.8	93.2	0.0	0.27	0.60	0.78	1.08	4.2	0.003	0.63	0.0	0.04	17.38	0.00	2.644	8.93	2.46	3.9	96.1	0.0	4.61	0.84	0.60	0.77	1.07	5314	626	4	0	2	0	0	logfile
✔	7F6i	31481	2024-11-14	2021-06-25	2.8	2.85	—	2.8	0.008	0.92	1.0	0.07	13.56	0.00	2.227	6.36	0.50	3.8	96.2	0.0	0.20	0.71	0.82	2.94	2.8	0.003	0.60	0.0	0.04	15.54	0.00	2.595	6.02	2.11	2.9	97.1	0.0	0.91	0.44	0.71	0.84	1.90	7361	915	6	0	3	0	0	logfile
✔	7F6H	31480	2024-11-14	2021-06-25	2.9	3.07	—	3.1	0.011	0.99	0.0	0.07	14.05	0.00	2.246	6.26	0.87	3.8	96.2	0.0	-0.14	0.65	0.80	3.25	3.1	0.003	0.60	0.0	0.04	15.40	0.00	2.159	4.56	2.23	3.3	96.7	0.0	0.93	1.10	0.61	0.79	2.46	7342	917	6	0	2	0	0	logfile
✔	7F6G	31479	2024-11-15	2021-06-25	2.9	3.07	—	3.0	0.009	0.98	0.0	0.08	13.90	0.00	2.197	4.74	0.65	3.0	97.0	0.0	-0.57	0.67	0.78	2.90	3.0	0.002	0.58	0.0	0.04	15.80	0.00	2.498	4.97	2.48	2.3	97.7	0.0	1.02	1.11	0.65	0.81	1.99	8697	1061	6	0	7	0	0	logfile
✔	7oZ1	13118	2024-11-15	2021-06-25	4.0	3.41	—	4.0	0.006	0.92	0.0	0.05	16.76	0.00	2.109	14.20	0.21	7.6	92.4	0.0	-3.23	0.61	0.80	—	4.0	0.004	0.66	0.0	0.04	17.04	0.00	2.454	8.31	2.36	6.7	93.3	0.0	-0.51	1.43	0.61	0.80	—	8942	1088	4	0	12	0	0	logfile
✔	7oZ3	13119	2024-11-15	2021-06-25	4.46	4.17	4.34	4.0	0.011	1.27	2.0	0.08	23.03	0.00	2.334	8.45	0.29	4.3	95.7	0.0	0.64	0.85	0.79	—	4.0	0.003	0.60	0.0	0.04	20.68	0.00	2.510	8.13	0.00	3.1	96.9	0.0	1.39	0.77	0.86	0.83	—	8209	804	8	88	2	0	0	logfile

• ← previous
• Page 294 of 424
• next →