Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7R7N	24299	2024-11-14	2021-06-25	3.95	4.08	3.93	4.1	0.010	1.24	0.0	0.07	9.31	0.00	2.553	0.78	0.45	3.2	96.8	0.0	0.00	0.81	0.77	3.23	4.0	0.005	0.80	0.0	0.05	14.47	0.00	2.543	8.72	6.28	5.9	94.1	0.0	-1.07	1.32	0.84	0.81	2.58	2790	391	4	0	3	0	0	logfile
✔	7F63	31471	2024-11-14	2021-06-24	3.9	4.20	—	4.0	0.002	0.58	0.0	0.04	13.34	0.00	2.136	12.60	0.00	8.3	91.4	0.2	-2.31	0.63	0.62	1.27	4.0	0.004	0.86	0.0	0.05	16.24	0.00	2.372	15.79	2.96	12.4	87.2	0.5	-3.10	1.52	0.65	0.71	1.41	3375	429	3	0	0	0	0	logfile
✔	7R7C	24297	2024-11-18	2021-06-24	3.71	3.61	3.17	3.3	0.002	0.53	0.0	0.04	20.67	0.00	2.134	11.12	0.00	4.8	95.2	0.0	-0.30	0.74	0.77	2.08	3.3	0.004	0.64	0.0	0.04	21.26	0.00	2.101	11.16	1.53	5.6	94.4	0.0	-0.20	0.41	0.74	0.78	1.95	14950	1273	11	226	0	0	0	logfile
✔	7R6L	24281	2024-11-15	2021-06-22	2.85	3.04	—	3.0	0.008	0.89	0.0	0.05	25.02	0.01	1.985	4.24	0.00	0.0	0.0	0.0	—	0.67	0.86	—	3.0	0.006	0.74	0.0	0.04	24.57	0.01	1.906	6.18	0.00	0.0	0.0	0.0	—	0.10	0.62	0.86	—	7857	0	3	366	20	0	0	logfile
✔	7R6M	24282	2024-11-14	2021-06-22	3.68	3.27	—	3.4	0.006	0.94	0.0	0.04	25.58	0.01	2.005	4.72	0.00	0.0	0.0	0.0	—	0.53	0.72	—	3.4	0.007	0.87	0.0	0.04	25.53	0.01	1.758	13.47	0.00	0.0	0.0	0.0	—	0.17	0.55	0.73	—	7755	0	3	362	13	0	0	logfile
✔	7F5T	31466	2024-11-20	2021-06-22	4.1	7.22	4.02	4.4	0.007	0.89	0.0	0.04	15.07	0.00	2.141	27.07	3.48	13.3	86.3	0.5	-5.03	0.80	0.78	—	4.4	0.003	0.70	0.0	0.04	13.84	0.00	2.365	12.32	0.00	6.1	93.7	0.2	-0.46	1.33	0.82	0.85	—	20436	2700	8	0	0	0	0	logfile
✔	7R6K	24280	2024-11-20	2021-06-22	3.17	3.23	3.15	3.2	0.003	0.52	0.0	0.04	17.70	0.00	2.200	8.68	0.00	4.3	95.7	0.0	0.58	0.73	0.79	2.37	3.2	0.003	0.56	0.0	0.04	18.44	0.00	2.384	5.85	1.31	4.9	95.1	0.0	0.93	0.40	0.74	0.82	2.05	20543	2153	16	152	0	0	0	logfile
✔	7F5V	31468	2024-11-20	2021-06-22	3.6	4.00	3.42	3.9	0.005	0.69	0.0	0.04	13.93	0.00	2.076	16.85	0.18	6.9	93.0	0.1	-4.69	0.75	0.80	1.04	3.9	0.005	0.74	0.0	0.05	15.75	0.00	2.524	14.69	1.74	6.5	93.4	0.1	-1.68	1.22	0.74	0.79	0.53	20912	2760	4	0	0	0	0	logfile
✔	7oXP	13103	2024-11-19	2021-06-22	2.7	2.77	2.57	2.8	0.003	0.59	0.0	0.04	13.63	0.00	2.031	8.06	0.00	2.2	97.8	0.0	0.08	0.71	0.86	3.21	2.8	0.003	0.58	0.0	0.04	17.74	0.00	2.588	6.05	1.56	3.0	97.0	0.0	0.55	0.42	0.71	0.89	2.31	18730	2300	10	0	0	0	0	logfile
✔	7oXR	13104	2024-11-17	2021-06-22	3.3	3.13	2.94	3.1	0.003	0.58	0.0	0.04	16.46	0.01	1.998	8.45	0.00	2.4	97.6	0.0	-1.36	0.77	0.87	4.32	3.1	0.004	0.62	0.0	0.05	17.98	0.00	2.582	4.46	1.61	2.6	97.4	0.0	-0.43	1.31	0.78	0.91	3.57	13670	1700	10	0	0	0	0	logfile
✔	7R6N	24283	2024-11-14	2021-06-22	4.1	3.51	—	3.7	0.006	0.96	0.0	0.04	25.04	0.01	2.036	3.68	0.00	0.0	0.0	0.0	—	0.56	0.75	—	3.7	0.007	0.83	0.0	0.04	24.91	0.01	1.762	15.26	0.00	0.0	0.0	0.0	—	1.26	0.58	0.76	—	7588	0	2	354	12	0	0	logfile
✔	7F4U	31454	2024-11-15	2021-06-21	4.2	3.10	—	3.0	0.004	0.87	0.0	0.04	14.59	0.01	2.087	18.07	0.00	14.4	85.1	0.6	-5.17	0.65	0.58	—	2.4	0.003	0.81	0.0	0.04	13.46	0.01	2.362	11.72	0.17	11.1	88.8	0.1	-1.04	0.76	0.70	0.71	—	8079	904	4	0	323	0	0	logfile
✔	7F53	31456	2024-11-15	2021-06-21	3.0	3.36	—	3.3	0.008	0.92	0.0	0.06	12.12	0.01	2.230	8.32	0.45	2.1	97.7	0.2	1.14	0.61	0.74	3.38	3.3	0.003	0.59	0.0	0.04	15.91	0.00	2.348	6.29	2.80	1.8	98.2	0.0	1.92	1.26	0.62	0.76	2.94	8153	1034	9	0	1	4	0	logfile
✔	7F55	31458	2024-11-15	2021-06-21	3.1	3.51	—	3.5	0.004	0.90	0.0	0.05	11.82	0.01	1.246	8.07	0.34	1.9	98.0	0.1	1.13	0.55	0.66	1.71	3.5	0.004	0.66	0.0	0.04	15.65	0.00	2.388	7.94	4.75	3.0	97.0	0.0	1.34	2.21	0.58	0.71	1.71	8088	1027	8	0	2	2	0	logfile
✔	7F5B	31464	2024-11-18	2021-06-21	3.9	4.19	—	4.1	0.004	0.82	1.0	0.05	16.74	0.00	2.110	14.96	0.18	8.7	91.2	0.1	-1.83	0.69	0.79	1.36	4.1	0.003	0.73	0.0	0.05	16.33	0.00	2.432	9.73	2.48	7.8	92.2	0.0	-1.08	0.46	0.68	0.80	0.86	15328	1921	11	0	14	0	0	logfile
✔	7F54	31457	2024-11-15	2021-06-21	3.0	3.37	—	3.3	0.004	0.89	0.0	0.05	11.93	0.01	2.194	9.38	0.22	1.9	97.9	0.2	1.16	0.57	0.66	1.89	3.3	0.003	0.73	0.0	0.04	15.96	0.00	2.369	9.51	2.47	1.7	98.3	0.0	1.65	1.32	0.57	0.70	1.40	8134	1033	8	0	2	4	0	logfile
✔	7NA8	24268	2024-11-15	2021-06-20	2.7	3.19	—	3.1	0.007	0.93	5.0	0.06	15.00	0.00	2.112	7.91	0.31	3.1	96.9	0.0	-1.04	0.78	0.87	4.31	3.1	0.003	0.62	0.0	0.04	15.76	0.00	2.540	6.95	0.93	2.7	97.3	0.0	0.44	0.37	0.72	0.87	3.63	8888	1124	6	0	2	0	0	logfile
✔	7NA7	24267	2024-11-15	2021-06-20	2.7	2.07	—	2.0	0.006	1.04	5.0	0.22	14.70	0.01	2.178	7.05	0.61	1.6	98.4	0.0	0.32	0.76	0.75	3.53	1.9	0.004	0.82	0.0	0.06	16.72	0.00	2.430	7.43	2.96	2.4	97.6	0.0	0.46	0.53	0.81	0.82	3.68	9036	1142	7	0	2	0	0	logfile
✔	7N9Q	24259	2024-11-14	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.5	0.003	1.00	0.0	0.00	5.05	0.00	2.580	6.76	0.00	12.3	86.7	0.9	-4.51	2.40	0.85	0.81	—	6945	2315	1	0	0	0	0	logfile
✔	7F4F	31449	2024-11-15	2021-06-18	2.9	3.43	—	3.2	0.010	1.09	0.0	0.06	12.60	0.01	2.164	4.69	0.00	3.9	96.1	0.0	-0.89	0.73	0.82	3.96	3.2	0.004	0.74	0.0	0.04	15.43	0.00	2.342	9.56	1.46	2.2	97.8	0.0	1.26	1.31	0.71	0.85	3.19	8881	1138	8	0	2	0	0	logfile

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