Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7F2o	31429	2024-11-15	2021-06-11	2.9	2.20	—	2.1	0.003	0.57	0.0	0.04	12.79	0.01	2.194	5.71	0.41	3.2	96.8	0.0	-0.75	0.70	0.68	3.19	2.0	0.004	0.70	0.0	0.05	16.00	0.00	2.413	12.43	2.95	2.5	97.5	0.0	0.56	0.65	0.75	0.77	2.78	9004	1150	6	0	0	0	0	logfile
✔	7oTo	13063	2024-11-16	2021-06-10	3.4	2.27	—	1.3	0.013	1.84	0.0	0.11	15.72	0.01	1.799	3.86	0.00	1.5	98.5	0.0	2.59	0.76	0.74	1.63	1.3	0.003	0.64	0.0	0.04	17.42	0.00	1.959	7.33	1.94	1.9	98.0	0.1	1.51	0.71	0.80	0.78	1.71	10333	1313	4	0	4	0	0	logfile
✔	7oU0	13071	2024-11-16	2021-06-10	3.8	3.58	—	3.7	0.013	1.77	0.0	0.11	15.37	0.01	1.798	4.10	0.09	1.5	98.5	0.0	2.70	0.81	0.81	1.19	3.8	0.003	0.71	0.0	0.04	17.54	0.00	1.927	8.97	2.95	2.6	97.3	0.1	1.50	2.12	0.82	0.83	1.73	10335	1313	4	0	6	0	0	logfile
✔	7F29	31428	2024-11-13	2021-06-10	3.1	3.08	—	3.2	0.014	1.07	0.0	0.06	14.68	0.00	2.305	11.88	0.00	14.3	85.7	0.0	-3.96	0.42	0.83	5.02	3.2	0.002	0.54	0.0	0.05	14.37	0.00	2.646	1.70	0.00	9.5	90.5	0.0	-1.94	1.56	0.41	0.83	5.57	1794	222	18	0	18	0	0	logfile
✔	7F23	31426	2024-11-16	2021-06-10	3.58	3.82	—	3.8	0.010	1.01	0.0	0.06	15.07	0.01	2.087	17.66	0.57	4.4	95.6	0.0	-2.63	0.66	0.80	1.60	3.8	0.005	1.08	0.0	0.05	17.19	0.00	2.292	12.82	3.51	3.3	96.7	0.0	0.44	0.61	0.65	0.79	1.28	8211	1037	7	0	2	0	0	logfile
✔	7oTi	13060	2024-11-15	2021-06-10	4.2	4.80	—	7.9	0.014	1.99	12.0	0.10	16.95	0.02	2.507	0.59	4.71	10.8	87.9	1.4	-3.63	0.36	0.23	—	4.9	0.003	0.81	0.0	0.04	14.41	0.00	2.422	13.39	0.00	6.3	93.3	0.4	-1.23	1.71	0.51	0.49	—	9171	1182	1	0	0	0	0	logfile
✔	7F24	31427	2024-11-15	2021-06-10	4.16	4.05	—	4.0	0.009	1.05	0.0	0.06	15.53	0.01	2.076	24.77	0.65	5.1	94.8	0.1	-2.40	0.69	0.76	—	4.0	0.003	0.74	0.0	0.05	14.56	0.00	2.449	14.00	0.13	3.3	96.7	0.0	0.35	1.39	0.68	0.75	—	7165	900	6	0	2	0	0	logfile
✔	7F1Q	31422	2024-11-15	2021-06-09	2.9	3.05	—	3.1	0.002	0.55	0.0	0.04	12.03	0.00	2.264	10.21	0.27	2.6	97.4	0.0	-1.52	0.58	0.72	2.25	3.1	0.004	0.65	0.0	0.04	15.45	0.00	2.563	12.21	2.71	4.0	96.0	0.0	0.36	0.66	0.61	0.80	3.83	7123	938	4	0	0	0	0	logfile
✔	7F1R	31423	2024-11-15	2021-06-09	3.0	3.21	—	3.2	0.002	0.48	0.0	0.04	11.21	0.00	2.224	8.07	0.46	1.5	98.5	0.0	-2.21	0.59	0.70	1.80	3.2	0.004	0.73	0.0	0.04	15.41	0.00	2.536	11.26	3.82	4.2	95.8	0.0	0.24	1.24	0.63	0.80	2.38	6621	894	4	0	0	0	0	logfile
✔	7N77	24222	2024-11-15	2021-06-09	3.2	4.05	3.31	3.7	0.006	1.31	0.0	0.06	13.19	0.01	1.692	9.63	0.14	3.5	96.5	0.0	-1.56	0.64	0.74	1.92	3.7	0.003	0.89	0.0	0.04	13.80	0.00	1.127	4.92	1.55	1.6	98.4	0.0	2.09	1.62	0.68	0.82	0.99	7470	1036	2	0	4	2	0	logfile
✔	7N73	24218	2024-11-15	2021-06-09	2.9	3.46	2.99	3.3	0.006	1.27	0.0	0.06	13.00	0.00	1.850	7.76	0.00	2.6	97.4	0.0	1.31	0.71	0.85	2.86	3.3	0.004	0.88	0.0	0.04	14.35	0.00	1.263	4.80	1.57	2.3	97.7	0.0	2.07	0.32	0.69	0.84	2.17	7866	1036	2	0	6	3	0	logfile
✔	7N72	24217	2024-11-15	2021-06-09	2.5	3.08	2.57	2.9	0.007	1.35	0.0	0.06	13.13	0.01	1.971	6.06	0.00	1.4	98.6	0.0	-0.87	0.72	0.85	3.04	2.9	0.002	0.85	0.0	0.04	14.15	0.00	1.562	5.34	0.94	1.8	98.2	0.0	2.31	0.44	0.70	0.86	2.81	7705	1030	2	0	11	5	0	logfile
✔	7N74	24219	2024-11-15	2021-06-09	2.8	3.52	2.84	3.3	0.006	0.89	0.0	0.10	13.21	0.01	1.844	7.52	0.00	2.2	97.8	0.0	0.74	0.75	0.84	3.27	3.3	0.003	0.60	0.0	0.04	14.44	0.00	2.471	3.92	1.33	1.8	98.2	0.0	2.38	0.55	0.68	0.82	2.42	7859	1036	2	0	4	3	0	logfile
✔	7N78	24223	2024-11-15	2021-06-09	3.0	3.81	3.01	3.5	0.010	0.96	0.0	0.06	13.02	0.01	1.930	8.14	0.00	2.6	97.4	0.0	-1.34	0.71	0.83	3.03	3.5	0.002	0.60	0.0	0.04	13.60	0.00	2.030	5.06	0.95	1.6	98.4	0.0	2.20	0.44	0.64	0.76	2.04	7669	1030	2	0	11	3	0	logfile
✔	7N76	24221	2024-11-14	2021-06-09	2.9	3.57	2.96	3.3	0.005	0.64	0.0	0.07	12.16	0.00	2.074	5.80	0.00	3.3	96.7	0.0	0.22	0.70	0.83	3.50	3.3	0.003	0.57	0.0	0.04	13.86	0.00	2.615	4.42	0.70	1.5	98.5	0.0	2.22	1.13	0.68	0.83	2.18	7399	1036	2	0	0	3	0	logfile
✔	7oT9	13057	2024-11-15	2021-06-09	2.8	3.63	2.69	3.3	0.005	0.67	0.0	0.04	14.51	0.00	2.138	10.05	0.00	5.6	94.4	0.0	2.47	0.60	0.81	2.16	3.3	0.003	0.66	0.0	0.04	16.82	0.00	2.625	6.97	2.06	7.1	92.9	0.0	3.31	1.19	0.58	0.80	1.87	8410	1105	5	0	0	0	0	logfile
✔	7N75	24220	2024-11-14	2021-06-09	2.9	3.58	2.95	3.3	0.007	0.69	0.0	0.05	12.89	0.01	2.157	7.91	0.00	3.0	97.0	0.0	0.75	0.69	0.82	3.17	3.3	0.003	0.60	0.0	0.04	14.41	0.00	2.590	5.83	0.71	2.2	97.8	0.0	2.40	0.37	0.66	0.81	1.95	7381	1036	2	0	0	3	0	logfile
✔	7N70	24214	2024-11-15	2021-06-09	2.8	3.43	2.92	3.3	0.005	0.73	0.0	0.05	13.22	0.01	2.109	7.93	0.00	1.6	98.4	0.0	0.27	0.74	0.85	2.88	3.3	0.003	0.57	0.0	0.04	14.88	0.00	1.346	5.82	1.27	1.9	98.1	0.0	1.73	0.44	0.63	0.77	2.16	7953	1032	2	0	4	0	0	logfile
✔	7oSL	13054	2024-11-18	2021-06-09	3.1	2.94	3.08	3.1	0.010	1.26	0.0	0.07	12.14	0.01	2.374	0.44	0.00	1.3	98.7	0.0	-2.09	0.61	0.67	2.20	3.1	0.003	0.69	0.0	0.04	14.58	0.00	2.442	2.49	0.37	1.4	98.6	0.0	1.08	0.72	0.73	0.79	2.04	47885	2935	9	0	0	0	24225	logfile
✔	7F1S	31424	2024-11-14	2021-06-09	2.8	3.44	—	3.2	0.002	0.55	0.0	0.04	10.91	0.00	2.228	9.48	0.00	3.5	96.5	0.0	-1.65	0.69	0.76	1.35	3.2	0.004	0.73	0.0	0.04	14.93	0.00	2.485	11.39	2.68	3.1	96.9	0.0	-0.04	1.17	0.70	0.81	2.25	6209	847	4	0	0	0	0	logfile

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