Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7N6R	24209	2024-11-17	2021-06-08	3.93	4.15	—	4.1	0.015	1.79	0.0	0.08	15.72	0.00	2.264	7.99	1.24	5.1	94.6	0.3	-3.93	0.60	0.75	0.98	4.1	0.006	1.30	4.0	0.07	17.28	0.01	2.040	13.50	4.02	5.0	94.9	0.1	-0.21	1.24	0.70	0.82	1.55	12708	1500	8	0	16	0	0	logfile
✔	7oSH	13051	2024-11-17	2021-06-08	3.8	4.13	—	3.9	0.008	1.09	1.0	0.06	14.37	0.01	1.971	5.11	0.60	6.6	93.4	0.0	-5.50	0.79	0.85	1.76	3.8	0.003	0.67	0.0	0.04	15.33	0.00	1.952	9.13	1.41	5.7	94.3	0.0	-0.17	0.57	0.79	0.85	1.21	12826	1665	9	0	3	1	0	logfile
✔	7oSi	13052	2024-11-17	2021-06-08	3.8	4.18	—	3.8	0.010	1.21	1.0	0.07	14.63	0.01	1.948	4.80	1.12	6.3	93.7	0.1	-5.48	0.81	0.84	1.80	3.8	0.004	0.73	0.0	0.04	15.71	0.00	1.976	8.98	2.61	6.0	94.0	0.0	-0.29	0.63	0.81	0.85	1.19	12826	1665	9	0	3	1	0	logfile
✔	7oSF	13049	2024-11-17	2021-06-08	3.8	4.07	—	3.7	0.007	1.11	1.0	0.07	14.29	0.01	1.976	4.06	0.52	6.9	93.0	0.1	-5.56	0.78	0.84	1.68	3.7	0.005	0.75	0.0	0.04	15.43	0.00	1.869	9.06	1.71	6.9	93.1	0.0	-0.42	1.50	0.79	0.86	1.38	12826	1665	9	0	3	1	0	logfile
✔	7oSG	13050	2024-11-17	2021-06-08	3.3	3.90	—	3.5	0.008	1.07	0.0	0.06	14.45	0.01	1.962	4.64	0.97	6.1	93.9	0.0	-5.46	0.81	0.85	2.24	3.6	0.005	0.68	0.0	0.04	15.56	0.00	1.883	7.70	1.79	5.6	94.4	0.0	-0.27	0.56	0.81	0.86	1.43	12831	1666	9	0	3	1	0	logfile
✔	7N6i	23726	2024-11-19	2021-06-08	3.9	4.39	3.87	4.1	0.014	1.72	26.0	0.13	16.03	0.01	1.336	8.03	0.45	2.1	97.7	0.2	-0.48	0.59	0.61	0.72	4.2	0.004	0.81	0.0	0.04	18.07	0.00	1.816	11.40	2.18	2.9	97.1	0.0	0.78	1.78	0.67	0.80	0.85	18939	2358	19	34	14	0	0	logfile
✔	7oSJ	13053	2024-11-17	2021-06-08	3.8	4.19	—	3.8	0.006	1.05	0.0	0.06	14.56	0.01	1.972	4.72	0.89	6.4	93.6	0.1	-5.62	0.77	0.83	1.65	3.9	0.002	0.66	0.0	0.04	15.71	0.00	2.027	8.31	1.42	5.4	94.6	0.0	-0.15	0.61	0.78	0.84	1.24	12853	1673	9	0	3	1	0	logfile
✔	7N64	24193	2024-11-14	2021-06-07	4.2	3.94	—	3.9	0.009	1.06	0.0	0.06	15.98	0.01	2.157	36.86	1.78	20.8	78.9	0.3	-3.80	0.65	0.71	—	3.9	0.004	0.81	0.0	0.05	13.84	0.01	2.403	14.60	0.00	11.6	88.4	0.0	-2.75	1.01	0.63	0.68	—	7189	906	7	0	7	0	0	logfile
✔	7oS2	13046	2024-11-18	2021-06-07	2.76	3.34	—	3.1	0.005	0.56	0.0	0.04	12.08	0.00	2.209	7.96	0.93	2.2	97.8	0.0	0.65	0.90	0.89	4.03	3.1	0.003	0.61	0.0	0.04	14.66	0.00	2.472	6.39	1.36	2.1	97.9	0.0	0.99	0.49	0.90	0.90	3.31	16485	2046	3	0	0	0	0	logfile
✔	7oS1	13045	2024-11-17	2021-06-07	3.3	3.92	—	3.6	0.005	0.60	0.0	0.04	12.08	0.00	2.229	10.23	0.96	2.8	97.2	0.0	0.53	0.90	0.86	2.53	3.6	0.003	0.63	0.0	0.04	14.65	0.00	2.489	8.39	1.41	2.8	97.2	0.0	0.87	1.33	0.89	0.86	2.35	14054	1746	2	0	0	0	0	logfile
✔	7F0T	31404	2024-11-16	2021-06-07	3.1	3.75	—	3.7	0.010	1.02	2.0	0.06	14.29	0.01	2.065	13.17	0.57	5.2	94.8	0.0	-2.51	0.58	0.74	2.44	3.8	0.003	0.62	0.0	0.04	16.21	0.00	2.477	8.07	4.08	1.8	98.2	0.0	0.86	1.20	0.56	0.72	1.70	8164	1033	6	0	1	0	0	logfile
✔	7oRN	13043	2024-11-18	2021-06-06	2.8	2.83	—	2.8	0.004	0.59	1.0	0.04	14.14	0.00	1.978	4.09	0.19	2.1	97.9	0.0	1.14	0.82	0.89	4.23	2.8	0.003	0.50	0.0	0.04	16.31	0.00	1.968	4.33	1.08	2.3	97.7	0.0	1.60	0.37	0.78	0.91	3.94	14811	1700	6	35	3	92	0	logfile
✔	7oRM	13042	2024-11-19	2021-06-06	3.3	3.39	—	3.4	0.004	0.70	1.0	0.05	14.43	0.00	2.004	6.24	0.20	3.2	96.8	0.0	0.73	0.82	0.85	2.64	3.4	0.003	0.53	0.0	0.04	15.68	0.00	1.955	5.44	0.91	3.2	96.8	0.0	1.16	0.35	0.82	0.87	2.34	18369	2145	5	40	2	0	0	logfile
✔	7oRo	13044	2024-11-19	2021-06-06	2.9	2.74	—	3.0	0.005	0.68	0.0	0.05	14.19	0.00	2.015	5.27	0.22	2.9	97.1	0.0	1.47	0.83	0.85	3.07	3.0	0.003	0.53	0.0	0.04	15.87	0.00	1.962	5.59	1.03	2.7	97.2	0.1	1.51	1.21	0.84	0.87	2.71	17416	2008	6	48	2	0	0	logfile
✔	7oRi	13038	2024-11-19	2021-06-06	3.9	3.96	—	3.7	0.003	0.57	0.0	0.04	15.32	0.00	1.911	9.29	1.30	3.4	96.6	0.0	1.23	0.86	0.85	2.14	3.7	0.003	0.54	0.0	0.04	16.26	0.00	2.421	7.89	1.08	3.3	96.7	0.0	1.47	0.34	0.86	0.85	1.93	17326	2007	5	44	3	0	0	logfile
✔	7N5F	24188	2024-11-14	2021-06-05	2.7	2.27	2.74	2.0	0.023	1.50	0.0	0.10	9.99	0.01	2.468	0.16	0.00	1.3	98.7	0.0	1.68	0.36	0.75	3.32	1.7	0.003	0.56	0.0	0.04	17.39	0.00	2.571	6.26	4.13	1.6	98.4	0.0	2.74	0.79	0.36	0.77	2.56	3037	386	2	0	1	0	0	logfile
✔	7N5E	24187	2024-11-19	2021-06-05	2.8	2.16	2.68	1.5	0.023	1.54	0.0	0.09	10.26	0.01	2.378	0.36	0.00	1.2	98.8	0.0	1.87	0.80	0.80	4.07	1.5	0.003	0.57	0.0	0.04	16.06	0.00	2.547	5.55	2.34	1.9	98.1	0.0	3.18	0.56	0.78	0.79	3.00	17915	2176	14	0	7	0	0	logfile
✔	7N58	24182	2024-11-15	2021-06-05	3.4	3.79	3.58	3.8	0.004	0.84	0.0	0.05	13.09	0.01	2.146	14.80	0.00	2.8	97.2	0.0	-0.83	0.61	0.67	1.16	3.8	0.003	0.65	0.0	0.04	16.21	0.00	2.552	8.73	1.69	5.3	94.7	0.0	0.64	0.56	0.64	0.72	1.06	9326	1200	2	0	0	0	0	logfile
✔	7N59	24183	2024-11-15	2021-06-05	3.6	4.16	3.74	4.1	0.004	0.62	0.0	0.04	14.74	0.00	2.221	7.04	0.10	2.1	97.9	0.0	1.69	0.69	0.81	1.10	4.1	0.003	0.52	0.0	0.04	16.25	0.00	2.517	6.02	1.20	2.2	97.8	0.0	2.48	0.36	0.69	0.81	0.62	9238	1180	3	0	1	0	0	logfile
✔	7N5D	24186	2024-11-20	2021-06-05	2.8	2.25	—	1.3	0.023	1.52	0.0	0.09	9.91	0.01	2.378	0.32	0.00	1.1	98.9	0.0	1.83	0.84	0.83	4.14	1.3	0.004	0.65	0.0	0.04	16.06	0.00	2.418	6.16	2.78	1.9	98.1	0.0	2.91	0.64	0.82	0.83	2.99	20593	2612	14	0	7	0	0	logfile

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