Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7N5F	24188	2024-11-14	2021-06-05	2.7	2.27	2.74	2.0	0.023	1.50	0.0	0.10	9.99	0.01	2.468	0.16	0.00	1.3	98.7	0.0	1.68	0.36	0.75	3.32	1.7	0.003	0.56	0.0	0.04	17.39	0.00	2.571	6.26	4.13	1.6	98.4	0.0	2.74	0.79	0.36	0.77	2.56	3037	386	2	0	1	0	0	logfile
✔	7N5E	24187	2024-11-19	2021-06-05	2.8	2.16	2.68	1.5	0.023	1.54	0.0	0.09	10.26	0.01	2.378	0.36	0.00	1.2	98.8	0.0	1.87	0.80	0.80	4.07	1.5	0.003	0.57	0.0	0.04	16.06	0.00	2.547	5.55	2.34	1.9	98.1	0.0	3.18	0.56	0.78	0.79	3.00	17915	2176	14	0	7	0	0	logfile
✔	7N4V	24179	2024-11-18	2021-06-04	3.58	3.85	—	3.8	0.014	1.78	0.0	0.20	16.54	0.01	2.288	6.17	0.12	7.8	92.2	0.0	-3.22	0.56	0.74	1.31	3.8	0.003	0.63	0.0	0.04	15.11	0.00	2.436	6.33	2.03	4.2	95.8	0.0	0.36	0.50	0.68	0.82	1.26	15390	1906	10	0	28	0	0	logfile
✔	7F0J	31399	2024-11-17	2021-06-04	2.9	2.91	2.89	2.9	0.002	0.54	0.0	0.04	13.59	0.01	2.281	9.77	0.00	6.3	93.7	0.0	0.67	0.59	0.73	1.26	3.0	0.003	0.61	0.0	0.04	17.05	0.01	2.526	8.24	2.03	5.1	94.9	0.0	0.92	0.60	0.61	0.79	1.38	12424	1544	8	0	4	0	0	logfile
✔	7oR0	13036	2024-11-19	2021-06-04	2.64	3.23	2.80	3.0	0.009	0.85	0.0	0.35	16.30	0.01	2.217	2.61	1.15	5.4	94.2	0.3	-1.99	0.72	0.85	3.40	3.0	0.002	0.55	0.0	0.04	14.47	0.00	2.397	2.99	1.25	3.7	96.3	0.0	1.72	1.13	0.72	0.85	2.77	19869	2384	16	0	33	52	0	logfile
✔	7N4X	24180	2024-11-15	2021-06-04	3.33	3.49	—	3.5	0.014	1.76	0.0	0.21	15.86	0.01	2.134	5.53	1.23	7.5	92.5	0.0	-3.15	0.52	0.76	2.75	3.5	0.003	0.58	0.0	0.04	14.99	0.00	2.542	4.55	1.97	3.7	96.3	0.0	0.62	0.39	0.70	0.87	2.19	7647	953	5	0	13	0	0	logfile
✔	7oR1	13037	2024-11-19	2021-06-04	2.64	3.23	—	3.0	0.009	0.78	0.0	0.35	16.58	0.01	2.262	2.89	1.72	6.0	93.7	0.3	-2.01	0.72	0.85	3.37	3.0	0.003	0.54	0.0	0.04	14.85	0.00	2.386	3.29	1.05	3.7	96.3	0.0	1.76	1.13	0.70	0.84	2.81	19869	2384	16	0	33	52	0	logfile
✔	7oQZ	13035	2024-11-15	2021-06-04	3.27	3.59	3.75	3.8	0.009	0.98	0.0	0.03	14.99	0.00	2.257	3.35	0.51	1.3	98.7	0.0	4.83	0.61	0.78	2.67	3.8	0.004	0.78	0.0	0.04	17.77	0.00	2.311	10.98	4.08	2.9	97.1	0.0	3.86	0.75	0.62	0.81	2.33	7996	948	8	0	16	0	0	logfile
✔	7N4T	24177	2024-11-17	2021-06-04	2.4	3.03	2.47	2.8	0.004	0.90	1.0	0.05	18.22	0.00	2.198	7.06	0.14	6.0	94.0	0.0	0.31	0.81	0.86	4.16	2.8	0.003	0.63	0.0	0.04	18.71	0.00	2.466	5.48	1.30	5.3	94.7	0.0	0.54	1.57	0.75	0.85	3.39	12887	1603	14	0	7	0	0	logfile
✔	7N4U	24178	2024-11-18	2021-06-04	3.34	3.91	—	3.8	0.014	1.80	0.0	0.29	17.76	0.01	2.102	4.84	1.79	5.3	94.5	0.2	-2.74	0.58	0.74	1.92	3.8	0.003	0.60	0.0	0.04	15.07	0.00	2.433	5.16	2.90	3.4	96.6	0.0	0.99	0.97	0.66	0.83	2.01	15396	1906	10	0	28	0	0	logfile
✔	7F03	31395	2024-11-15	2021-06-03	3.29	3.68	—	3.6	0.005	0.75	0.0	0.04	15.39	0.01	1.885	10.01	0.11	5.2	94.8	0.0	-0.34	0.70	0.84	2.85	3.5	0.004	0.69	0.0	0.04	16.14	0.00	1.947	8.85	3.27	6.3	93.6	0.1	0.78	0.96	0.68	0.86	2.60	8891	1130	11	0	5	4	0	logfile
✔	7F02	31394	2024-11-15	2021-06-03	3.24	3.61	—	3.5	0.004	0.69	0.0	0.04	14.42	0.00	1.895	8.78	0.00	8.7	91.1	0.2	-1.36	0.69	0.81	2.02	3.5	0.003	0.72	0.0	0.04	16.19	0.00	1.953	7.22	2.84	7.5	92.4	0.1	-0.40	0.40	0.65	0.83	2.32	8835	1130	9	0	5	0	0	logfile
✔	7F04	31396	2024-11-15	2021-06-03	2.86	3.11	—	3.0	0.005	0.80	0.0	0.04	13.87	0.01	1.706	9.75	0.00	6.4	93.4	0.2	-0.04	0.65	0.83	3.68	3.0	0.004	0.69	0.0	0.04	16.35	0.00	1.993	8.43	1.85	6.4	93.5	0.1	1.09	0.91	0.66	0.86	2.81	8934	1130	12	0	6	4	0	logfile
✔	7EZV	31391	2024-11-14	2021-06-02	3.3	3.71	—	3.5	0.005	0.71	0.0	0.05	13.54	0.01	2.034	14.66	0.75	8.4	91.3	0.3	-0.96	0.74	0.85	3.03	3.5	0.004	0.69	0.0	0.05	15.37	0.00	2.429	10.94	1.68	7.4	92.4	0.2	-0.70	0.43	0.74	0.86	3.36	4937	632	5	0	0	0	0	logfile
✔	7EZ0	31385	2024-11-15	2021-06-01	3.14	3.26	—	3.2	0.003	0.56	0.0	0.03	23.64	0.00	1.804	2.25	0.00	0.0	0.0	0.0	—	0.74	0.79	—	3.2	0.004	0.61	0.0	0.03	23.75	0.00	1.904	6.34	0.00	0.0	0.0	0.0	—	2.04	0.77	0.86	—	8306	0	2	387	27	0	0	logfile
✔	7N3o	24142	2024-11-15	2021-06-01	3.8	4.01	—	3.9	0.003	0.59	0.0	0.04	23.64	0.00	2.285	8.30	1.35	3.6	96.4	0.0	1.09	0.71	0.66	1.57	3.9	0.007	0.85	0.0	0.04	24.24	0.01	2.194	19.33	3.78	4.0	96.0	0.0	-0.04	0.89	0.76	0.75	1.92	8295	454	2	222	0	0	0	logfile
✔	7EZH	31387	2024-11-15	2021-06-01	3.2	2.28	—	2.1	0.004	0.68	1.0	0.05	12.75	0.01	2.278	2.69	0.74	4.7	95.2	0.1	-1.38	0.73	0.72	2.97	2.1	0.003	0.67	0.0	0.04	15.56	0.00	2.439	10.06	2.75	2.1	97.9	0.0	0.80	0.66	0.75	0.76	2.19	8838	1150	6	0	0	0	0	logfile
✔	7EZK	31388	2024-11-14	2021-06-01	3.1	2.25	—	2.1	0.011	1.04	0.0	0.06	13.27	0.01	2.206	4.27	0.26	3.4	96.6	0.0	-1.02	0.72	0.73	3.21	2.1	0.003	0.64	0.0	0.04	16.16	0.00	2.593	9.10	2.86	1.8	98.2	0.0	0.96	1.61	0.74	0.78	2.75	7196	922	5	0	0	0	0	logfile
✔	7oPL	13020	2024-11-19	2021-06-01	4.12	5.46	3.80	3.9	0.004	0.77	1.0	0.05	14.34	0.01	2.116	18.14	0.05	4.5	95.5	0.1	-0.84	0.90	0.77	—	4.0	0.004	0.70	0.0	0.04	14.49	0.00	2.347	16.62	0.00	4.9	95.0	0.1	-0.51	0.61	0.92	0.84	—	19743	2442	8	0	4	0	0	logfile
✔	7N3P	24143	2024-11-15	2021-06-01	3.65	3.97	—	3.9	0.003	0.58	0.0	0.04	24.55	0.00	2.224	8.05	0.00	2.2	97.8	0.0	1.68	0.77	0.79	2.64	3.9	0.003	0.60	0.0	0.03	24.56	0.00	2.230	11.36	1.89	2.5	97.5	0.0	1.45	0.48	0.78	0.82	2.88	9055	454	4	259	0	0	0	logfile

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