Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oP8	13014	2024-11-15	2021-05-31	3.5	3.85	—	3.8	0.004	0.86	0.0	0.05	14.44	0.01	1.950	6.41	0.00	5.6	94.4	0.0	-1.73	0.66	0.77	1.18	3.8	0.004	0.67	0.0	0.04	16.20	0.00	1.381	9.78	2.87	6.6	93.4	0.0	-0.85	0.95	0.66	0.79	0.93	8872	1118	2	0	2	0	0	logfile
✔	7EYA	31380	2024-11-14	2021-05-30	3.77	3.98	—	4.0	0.008	1.01	0.0	0.04	16.97	0.01	2.142	8.20	0.00	7.6	92.2	0.2	-2.30	0.60	0.77	2.21	3.9	0.003	0.70	0.0	0.04	15.76	0.01	2.519	7.54	3.59	8.3	91.5	0.2	-1.96	1.20	0.60	0.78	2.52	4629	576	5	0	3	0	0	logfile
✔	7EY5	31378	2024-11-14	2021-05-29	3.4	3.68	—	3.5	0.005	0.81	0.0	0.05	13.84	0.01	2.161	11.76	0.00	12.9	87.1	0.0	-3.63	0.68	0.82	2.63	3.6	0.004	0.81	0.0	0.05	15.12	0.00	2.438	8.04	2.00	10.0	90.0	0.0	-2.38	0.45	0.68	0.83	1.96	5072	648	5	0	0	0	0	logfile
✔	7EY4	31377	2024-11-14	2021-05-29	3.69	3.90	—	3.9	0.007	0.90	0.0	0.05	16.81	0.01	2.150	10.63	0.20	13.5	86.1	0.4	-2.54	0.63	0.78	3.57	3.9	0.004	0.80	0.0	0.05	15.74	0.01	2.437	8.44	3.60	9.2	90.8	0.0	-1.71	1.28	0.66	0.81	3.14	4683	585	5	0	3	0	0	logfile
✔	7oP3	13012	2024-11-15	2021-05-28	3.5	3.77	—	3.7	0.004	0.78	0.0	0.05	14.58	0.01	2.278	5.95	0.00	4.8	95.2	0.0	-1.24	0.63	0.81	0.96	3.7	0.003	0.59	0.0	0.04	16.30	0.00	2.341	7.70	1.45	4.8	95.2	0.0	-0.31	0.37	0.62	0.82	0.54	8772	1100	2	0	1	0	0	logfile
✔	7oP1	13011	2024-11-15	2021-05-28	3.7	3.77	—	3.6	0.004	1.16	0.0	0.04	13.67	0.00	1.848	7.11	0.00	4.7	95.3	0.0	-0.69	0.69	0.87	2.43	3.7	0.004	0.58	0.0	0.04	15.12	0.00	1.803	3.70	1.25	3.3	96.7	0.0	0.58	0.30	0.70	0.86	1.52	8744	1098	2	0	3	0	0	logfile
✔	7ooA	13008	2024-11-18	2021-05-27	2.7	2.63	2.63	2.6	0.005	0.66	0.0	0.05	21.92	0.00	2.256	5.81	0.00	0.4	99.6	0.0	2.71	0.71	0.86	4.30	2.6	0.002	0.45	0.0	0.04	15.57	0.00	2.593	5.87	1.35	0.3	99.7	0.0	2.67	1.12	0.70	0.88	3.46	15610	1834	14	0	35	0	0	logfile
✔	7N17	24115	2024-11-18	2021-05-27	3.1	3.51	—	3.4	0.009	1.32	4.0	0.06	18.63	0.01	2.022	3.44	1.28	2.9	97.1	0.0	-4.58	0.67	0.86	3.03	3.4	0.004	0.61	0.0	0.04	15.92	0.00	2.545	6.76	1.28	2.0	98.0	0.0	0.72	0.51	0.68	0.89	2.89	17596	2068	8	0	24	0	0	logfile
✔	7N16	24114	2024-11-18	2021-05-27	3.2	3.17	—	3.5	0.008	1.18	0.0	0.06	18.87	0.01	2.027	4.59	0.86	5.7	94.3	0.0	-4.54	0.63	0.84	2.47	3.5	0.002	0.57	0.0	0.04	16.92	0.00	2.328	7.58	2.20	5.5	94.5	0.0	0.76	1.01	0.63	0.85	2.03	17357	2056	8	0	17	0	0	logfile
✔	7EXD	31371	2024-11-15	2021-05-27	3.4	2.47	—	2.2	0.003	0.52	0.0	0.04	12.79	0.00	2.114	6.44	0.53	2.1	97.9	0.0	1.95	0.73	0.73	1.79	2.2	0.003	0.63	0.0	0.04	16.07	0.00	2.510	10.34	2.75	1.9	98.1	0.0	0.84	1.20	0.74	0.76	2.10	8749	1118	6	0	1	0	0	logfile
✔	7oo0	13003	2024-11-18	2021-05-26	3.1	3.05	2.96	3.1	0.009	0.86	0.0	0.05	28.47	0.00	2.131	7.27	0.00	3.1	96.9	0.0	-1.80	0.61	0.78	2.85	3.1	0.003	0.64	0.0	0.05	15.00	0.00	2.477	5.50	0.61	0.5	99.5	0.0	2.56	1.55	0.61	0.79	2.46	16016	1834	14	0	56	0	0	logfile
✔	7oo8	13007	2024-11-17	2021-05-26	3.7	2.99	3.39	3.0	0.003	0.40	0.0	0.04	9.89	0.00	2.286	6.45	0.00	1.9	98.1	0.0	2.79	0.65	0.79	2.44	3.0	0.002	0.48	0.0	0.04	14.86	0.00	2.595	9.47	1.62	1.3	98.7	0.0	2.41	1.14	0.65	0.79	2.14	13923	1827	7	0	0	0	0	logfile
✔	7oo6	13006	2024-11-17	2021-05-26	3.1	2.92	2.88	3.0	0.004	0.57	0.0	0.04	12.22	0.00	2.327	9.05	0.00	1.5	98.5	0.0	2.48	0.63	0.80	2.67	3.0	0.003	0.48	0.0	0.04	14.07	0.00	2.454	7.49	1.49	1.3	98.7	0.0	2.51	1.55	0.64	0.82	2.26	14546	1827	14	0	14	0	0	logfile
✔	7EXA	31367	2024-11-14	2021-05-26	2.9	2.57	—	2.8	0.010	1.22	0.0	0.07	16.18	0.00	1.984	12.75	1.60	2.2	97.8	0.0	-0.45	0.32	0.85	4.31	2.8	0.003	0.56	0.0	0.04	17.39	0.00	2.598	3.11	2.56	1.6	98.4	0.0	2.43	0.88	0.32	0.87	3.13	3088	374	2	6	0	0	0	logfile
✔	7oNU	13002	2024-11-18	2021-05-26	3.0	3.11	2.88	3.1	0.005	0.58	0.0	0.04	16.02	0.01	1.890	4.49	0.07	2.4	97.6	0.0	0.53	0.74	0.81	4.05	3.1	0.003	0.55	0.0	0.04	17.53	0.00	2.283	4.90	0.76	1.8	98.2	0.0	1.45	0.41	0.76	0.88	3.30	15083	1763	12	66	6	0	0	logfile
✔	7N0M	24109	2024-11-19	2021-05-25	3.5	3.71	—	3.6	0.009	1.06	0.0	0.05	15.23	0.01	2.290	5.51	0.57	5.4	94.6	0.0	-2.71	0.72	0.82	2.63	3.7	0.005	0.71	0.0	0.04	16.24	0.00	2.508	8.82	2.58	4.8	95.2	0.0	0.12	0.40	0.72	0.82	1.67	19780	2476	6	0	4	0	0	logfile
✔	7N0B	24102	2024-11-14	2021-05-25	3.9	4.21	—	4.2	0.006	1.10	1.0	0.06	16.97	0.01	1.921	8.42	0.36	1.9	98.1	0.0	-3.60	0.73	0.76	1.95	4.2	0.003	0.70	0.0	0.04	17.74	0.00	2.233	11.82	2.89	5.7	94.3	0.0	-0.97	1.28	0.74	0.78	1.65	5875	643	7	39	7	1	0	logfile
✔	7oN1	12993	2024-11-16	2021-05-25	3.35	3.18	—	3.4	0.002	0.47	0.0	0.03	26.14	0.00	2.120	6.38	0.00	1.5	98.5	0.0	-0.25	0.82	0.83	1.11	3.4	0.005	0.60	0.0	0.04	27.24	0.00	2.109	4.65	1.88	2.9	97.1	0.0	2.39	1.33	0.84	0.90	1.68	11150	777	12	246	0	0	0	logfile
✔	7N0N	24110	2024-11-19	2021-05-25	4.15	4.37	—	4.2	0.006	1.01	0.0	0.06	14.98	0.01	2.243	4.69	0.38	3.6	96.4	0.0	-2.21	0.68	0.80	—	4.2	0.003	0.62	0.0	0.04	15.16	0.00	2.507	7.40	0.00	3.3	96.7	0.0	0.91	1.12	0.68	0.80	—	19632	2468	4	0	0	0	0	logfile
✔	7N0C	24103	2024-11-14	2021-05-25	3.4	3.71	—	3.7	0.009	1.00	0.0	0.05	16.67	0.01	2.180	6.79	0.00	1.3	98.7	0.0	-3.80	0.72	0.80	2.48	3.7	0.006	1.00	0.0	0.04	17.18	0.00	1.087	10.53	3.07	5.0	95.0	0.0	-1.64	1.16	0.72	0.82	2.03	6088	644	6	49	7	1	0	logfile

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