Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oNJ	12996	2024-11-18	2021-05-25	2.3	2.52	2.24	2.5	0.009	0.86	0.0	0.05	27.96	0.00	2.155	8.48	0.47	0.8	99.2	0.0	-0.25	0.76	0.88	5.16	2.5	0.004	0.77	1.0	0.05	17.67	0.00	2.421	6.72	0.88	0.7	99.3	0.0	3.01	0.47	0.76	0.89	4.24	16947	1834	21	0	63	266	0	logfile
✔	7oN1	12993	2024-11-16	2021-05-25	3.35	3.18	—	3.4	0.002	0.47	0.0	0.03	26.14	0.00	2.120	6.38	0.00	1.5	98.5	0.0	-0.25	0.82	0.83	1.11	3.4	0.005	0.60	0.0	0.04	27.24	0.00	2.109	4.65	1.88	2.9	97.1	0.0	2.39	1.33	0.84	0.90	1.68	11150	777	12	246	0	0	0	logfile
✔	7oNi	12995	2024-11-15	2021-05-25	3.4	3.65	3.17	3.3	0.003	0.53	0.0	0.04	14.04	0.00	1.323	7.13	0.00	4.2	95.8	0.0	0.82	0.87	0.85	2.39	3.3	0.003	0.56	0.0	0.04	15.88	0.00	2.501	5.79	0.78	3.9	96.1	0.0	1.44	0.94	0.88	0.87	1.99	8840	1141	6	0	7	0	0	logfile
✔	7oNL	12997	2024-11-17	2021-05-25	3.9	3.35	3.58	3.6	0.002	0.38	0.0	0.04	9.17	0.00	2.180	5.51	0.41	1.5	98.5	0.0	2.97	0.64	0.80	2.02	3.6	0.003	0.64	0.0	0.04	13.97	0.00	2.612	8.10	2.84	1.2	98.8	0.0	2.29	1.18	0.63	0.80	1.59	13923	1827	7	0	0	0	0	logfile
✔	7N0N	24110	2024-11-19	2021-05-25	4.15	4.37	—	4.2	0.006	1.01	0.0	0.06	14.98	0.01	2.243	4.69	0.38	3.6	96.4	0.0	-2.21	0.68	0.80	—	4.2	0.003	0.62	0.0	0.04	15.16	0.00	2.507	7.40	0.00	3.3	96.7	0.0	0.91	1.12	0.68	0.80	—	19632	2468	4	0	0	0	0	logfile
✔	7N0M	24109	2024-11-19	2021-05-25	3.5	3.71	—	3.6	0.009	1.06	0.0	0.05	15.23	0.01	2.290	5.51	0.57	5.4	94.6	0.0	-2.71	0.72	0.82	2.63	3.7	0.005	0.71	0.0	0.04	16.24	0.00	2.508	8.82	2.58	4.8	95.2	0.0	0.12	0.40	0.72	0.82	1.67	19780	2476	6	0	4	0	0	logfile
✔	7EVZ	31342	2024-11-16	2021-05-24	3.07	3.81	—	3.7	0.004	0.58	0.0	0.04	13.33	0.00	2.160	7.10	0.30	3.2	96.8	0.0	-1.99	0.54	0.75	1.86	3.7	0.003	0.58	0.0	0.04	15.47	0.00	2.357	4.73	2.94	4.0	96.0	0.0	0.14	0.93	0.49	0.72	1.61	9078	1144	6	0	5	0	0	logfile
✔	7oMM	12990	2024-11-17	2021-05-24	3.4	3.84	—	3.8	0.010	1.47	6.0	0.10	18.84	0.01	1.818	12.01	16.45	9.3	90.2	0.5	-2.70	0.49	0.47	1.89	3.8	0.004	0.73	0.0	0.05	17.18	0.01	2.408	12.01	3.69	11.2	88.7	0.1	-2.19	1.08	0.62	0.71	1.65	13981	1794	4	0	0	0	0	logfile
✔	7EW7	31349	2024-11-16	2021-05-24	3.27	3.91	—	3.9	0.003	0.59	0.0	0.04	13.52	0.00	2.016	6.73	0.71	3.6	96.4	0.0	-2.17	0.56	0.74	2.49	3.9	0.003	0.57	0.0	0.04	15.64	0.00	2.512	4.90	3.65	4.5	95.5	0.0	-0.14	0.95	0.60	0.79	1.97	9004	1144	6	0	1	0	0	logfile
✔	7EW0	31343	2024-11-16	2021-05-24	3.42	4.10	—	4.1	0.003	0.63	0.0	0.04	14.14	0.00	2.087	6.86	0.71	2.9	97.1	0.0	-1.47	0.59	0.76	1.95	4.1	0.003	0.60	0.0	0.04	16.47	0.00	2.521	5.02	3.05	3.0	97.0	0.0	0.04	0.45	0.61	0.80	1.87	8987	1142	6	0	1	0	0	logfile
✔	7EW4	31347	2024-11-15	2021-05-24	3.2	3.38	—	3.4	0.003	0.51	0.0	0.04	13.41	0.00	2.237	7.77	0.00	2.0	98.0	0.0	1.05	0.67	0.74	2.41	3.4	0.003	0.54	0.0	0.04	15.05	0.00	2.477	6.59	1.67	2.7	97.3	0.0	1.06	0.95	0.68	0.80	2.28	8929	1145	6	0	3	0	0	logfile
✔	7MZ5	24083	2024-11-17	2021-05-24	2.76	2.90	2.75	3.0	0.005	0.72	4.0	0.05	11.21	0.00	2.138	1.25	1.03	4.1	95.5	0.4	1.27	0.56	0.80	2.22	3.0	0.003	0.62	0.0	0.04	15.69	0.00	2.290	8.67	1.80	5.9	94.1	0.0	1.64	0.71	0.55	0.82	1.65	14291	1724	8	0	7	0	0	logfile
✔	7MZD	24090	2024-11-18	2021-05-24	2.9	3.17	2.77	3.2	0.010	0.79	0.0	0.05	10.90	0.01	2.252	1.11	0.59	4.0	96.0	0.0	1.32	0.64	0.88	3.97	3.2	0.003	0.70	0.0	0.04	15.47	0.00	2.273	7.04	1.54	6.0	94.0	0.0	1.78	1.38	0.63	0.90	3.06	17486	2128	12	0	6	4	0	logfile
✔	7MZ7	24085	2024-11-19	2021-05-24	3.35	3.57	3.23	3.6	0.013	0.96	0.0	0.06	12.08	0.01	2.046	1.92	0.41	5.7	94.1	0.2	0.21	0.62	0.84	2.91	3.6	0.003	0.69	0.0	0.04	15.31	0.00	2.341	7.30	2.07	6.2	93.8	0.0	0.92	1.80	0.62	0.85	1.61	17889	2180	8	0	5	0	0	logfile
✔	7MZC	24089	2024-11-18	2021-05-24	3.03	3.16	2.96	3.2	0.012	0.90	0.0	0.05	12.07	0.01	2.028	1.92	1.12	5.3	94.6	0.1	0.39	0.61	0.87	3.33	3.2	0.003	0.62	0.0	0.04	15.40	0.00	2.315	7.15	1.87	6.1	93.9	0.0	1.19	1.40	0.63	0.89	1.89	17334	2112	8	0	6	0	0	logfile
✔	7MYo	24082	2024-11-16	2021-05-21	2.92	3.27	2.93	3.3	0.005	0.89	0.0	0.05	15.19	0.01	2.225	9.92	0.59	5.9	94.1	0.0	-1.97	0.57	0.66	0.99	3.2	0.007	1.20	1.0	0.05	17.88	0.01	2.023	22.47	3.13	5.8	94.1	0.1	-0.92	1.18	0.59	0.69	1.16	10634	1278	3	0	1	0	0	logfile
✔	7EVN	31330	2024-11-19	2021-05-21	2.6	2.63	—	2.6	0.006	0.86	0.0	0.05	17.47	0.01	2.168	8.61	6.98	4.7	95.2	0.2	-2.09	0.69	0.80	2.93	2.6	0.003	0.63	0.0	0.04	17.63	0.00	2.480	4.56	2.92	4.1	95.9	0.0	0.20	1.20	0.73	0.87	2.76	19668	2649	6	0	3	0	0	logfile
✔	7EVM	31329	2024-11-15	2021-05-21	2.5	3.26	—	3.1	0.005	0.85	1.0	0.06	15.26	0.00	2.175	11.52	3.36	3.8	96.2	0.0	-2.23	0.59	0.70	2.20	3.1	0.003	0.67	0.0	0.04	16.57	0.00	2.512	8.27	3.48	3.2	96.8	0.0	0.23	1.41	0.62	0.77	2.19	8462	1037	6	0	7	0	0	logfile
✔	7EVP	31339	2024-11-14	2021-05-21	3.2	3.77	—	3.7	0.008	0.87	0.0	0.06	9.80	0.01	2.328	3.80	0.26	6.2	93.8	0.0	-5.27	0.64	0.77	3.74	3.6	0.003	0.61	0.0	0.05	13.67	0.00	2.424	7.22	3.04	5.9	94.1	0.0	-1.99	0.52	0.69	0.81	3.09	6616	840	4	0	0	0	0	logfile
✔	7oLA	12975	2024-11-19	2021-05-19	3.3	3.85	3.21	3.3	0.004	0.59	0.0	0.04	16.47	0.00	2.023	7.61	0.00	2.7	97.3	0.0	1.22	0.88	0.85	2.96	3.4	0.005	0.74	1.0	0.04	16.20	0.00	1.895	7.84	0.50	3.2	96.8	0.0	1.12	0.88	0.88	0.89	2.87	19719	2394	10	0	7	0	0	logfile

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