Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oLA	12975	2024-11-19	2021-05-19	3.3	3.85	3.21	3.3	0.004	0.59	0.0	0.04	16.47	0.00	2.023	7.61	0.00	2.7	97.3	0.0	1.22	0.88	0.85	2.96	3.4	0.005	0.74	1.0	0.04	16.20	0.00	1.895	7.84	0.50	3.2	96.8	0.0	1.12	0.88	0.88	0.89	2.87	19719	2394	10	0	7	0	0	logfile
✔	7oJL	12955	2024-11-17	2021-05-16	3.3	3.67	3.30	3.4	0.003	0.46	0.0	0.04	13.04	0.00	1.827	7.40	2.98	8.2	91.8	0.1	-2.78	0.86	0.82	2.82	3.4	0.002	0.52	0.0	0.04	15.01	0.00	2.193	6.41	1.97	6.5	93.5	0.0	0.30	1.01	0.89	0.88	2.40	12842	1498	4	33	1	0	0	logfile
✔	7oJJ	12953	2024-11-17	2021-05-16	3.5	4.03	3.58	3.5	0.006	0.66	2.0	0.06	13.63	0.00	2.009	9.47	0.12	11.4	88.6	0.0	-3.69	0.92	0.87	2.01	3.5	0.002	0.59	0.0	0.04	14.85	0.00	1.964	5.54	1.05	6.6	93.4	0.0	-0.52	0.98	0.92	0.88	1.70	14330	1785	2	0	2	0	0	logfile
✔	7oJi	12952	2024-11-15	2021-05-16	3.4	3.75	3.40	3.6	0.012	1.08	0.0	0.08	12.85	0.00	2.231	4.30	0.41	4.8	95.0	0.2	-0.15	0.69	0.83	3.28	3.6	0.005	0.61	0.0	0.04	14.99	0.00	2.552	4.46	1.84	4.9	95.1	0.0	1.63	0.69	0.72	0.88	2.56	9195	1144	4	0	9	0	0	logfile
✔	7oJK	12954	2024-11-18	2021-05-16	3.89	4.14	3.97	3.8	0.002	0.61	0.0	0.04	15.07	0.00	2.174	10.15	0.06	15.2	84.5	0.2	-4.19	0.88	0.81	1.38	3.8	0.003	0.68	0.0	0.04	16.40	0.00	2.350	9.03	1.42	9.1	90.9	0.0	-0.99	0.73	0.89	0.83	1.07	15316	1843	4	21	1	0	0	logfile
✔	7oJH	12951	2024-11-15	2021-05-15	3.1	3.40	3.12	3.3	0.011	0.90	0.0	0.05	11.82	0.00	2.240	2.92	0.52	2.9	97.1	0.0	0.37	0.70	0.83	3.56	3.3	0.004	0.60	0.0	0.04	14.97	0.00	2.583	3.86	1.76	3.0	97.0	0.0	1.46	0.99	0.71	0.88	2.84	8999	1138	4	0	5	0	0	logfile
✔	7ETW	31303	2024-11-14	2021-05-14	4.1	4.06	—	4.0	0.009	1.21	1.0	0.08	13.70	0.01	1.843	16.06	1.36	11.6	86.4	1.9	-5.46	0.53	0.72	—	4.0	0.003	0.79	0.0	0.04	11.57	0.00	2.426	8.14	0.00	5.7	93.7	0.6	-0.22	3.39	0.54	0.74	—	4952	680	4	0	6	0	0	logfile
✔	7oJ8	12939	2024-11-15	2021-05-14	3.4	3.92	3.48	3.8	0.010	1.14	0.0	0.06	13.09	0.00	2.114	6.59	0.41	5.3	94.2	0.5	-1.11	0.63	0.79	1.90	3.8	0.004	0.69	0.0	0.04	15.01	0.00	2.452	8.32	3.36	5.2	94.8	0.0	1.19	2.66	0.63	0.82	1.12	9148	1150	4	0	7	0	0	logfile
✔	7MTQ	23994	2024-11-16	2021-05-13	3.65	2.61	—	2.2	0.011	0.88	1.0	0.05	14.58	0.01	2.205	8.45	0.56	3.2	96.8	0.0	0.26	0.70	0.73	2.03	2.2	0.004	0.61	0.0	0.04	14.82	0.00	2.521	5.74	1.67	3.4	96.6	0.0	0.40	0.41	0.72	0.75	1.74	10388	1486	4	0	4	0	0	logfile
✔	7MTD	23983	2024-11-19	2021-05-13	3.5	2.75	3.50	3.5	0.007	0.89	0.0	0.06	9.99	0.01	2.308	2.25	0.15	6.5	93.5	0.0	-4.05	0.71	0.81	2.91	3.4	0.003	0.65	0.0	0.05	13.67	0.00	2.459	4.34	2.24	4.9	95.0	0.1	-0.96	1.11	0.73	0.81	2.41	18833	2348	20	0	41	0	0	logfile
✔	7MTE	23984	2024-11-20	2021-05-13	3.2	2.75	3.06	3.1	0.005	0.82	0.0	0.06	9.70	0.01	2.298	2.16	0.04	4.5	95.5	0.0	-3.17	0.74	0.84	3.68	3.0	0.006	0.83	2.0	0.05	13.36	0.01	2.153	4.75	1.64	5.3	94.7	0.0	-0.56	1.37	0.77	0.87	3.27	20612	2568	20	0	42	0	0	logfile
✔	7MTR	23995	2024-11-16	2021-05-13	3.3	2.40	—	2.1	0.006	0.93	1.0	0.05	14.01	0.01	2.236	7.85	1.25	4.1	95.9	0.0	-0.18	0.78	0.75	2.62	2.1	0.004	0.62	0.0	0.04	15.19	0.01	2.527	4.31	3.12	2.9	97.1	0.0	0.57	0.50	0.79	0.79	2.30	10933	1526	6	0	3	0	0	logfile
✔	7ET1	31294	2024-11-19	2021-05-12	2.6	3.09	2.69	3.0	0.007	1.25	0.0	0.05	17.05	0.01	1.936	9.51	0.19	2.7	97.3	0.0	0.57	0.76	0.87	2.95	3.0	0.002	0.78	0.0	0.04	16.64	0.00	1.282	5.38	1.03	1.8	98.2	0.0	1.90	1.03	0.73	0.89	2.76	10015	1249	5	0	14	1	0	logfile
✔	7MSW	23970	2024-11-15	2021-05-12	3.76	3.93	3.60	3.8	0.009	0.66	0.0	0.05	10.62	0.00	1.933	0.81	0.00	2.5	97.3	0.2	-0.01	0.79	0.80	1.87	3.8	0.003	0.58	0.0	0.04	14.22	0.00	2.297	4.56	1.84	4.7	95.3	0.0	-0.27	0.96	0.79	0.81	1.57	9881	635	2	0	3	0	4959	logfile
✔	7oiU	12933	2024-11-17	2021-05-12	3.7	4.05	3.71	3.8	0.004	0.68	0.0	0.04	12.59	0.00	2.059	10.44	0.00	4.8	95.2	0.0	-0.19	0.73	0.77	2.53	3.8	0.003	0.61	0.0	0.04	14.71	0.00	2.495	8.33	2.45	4.9	95.1	0.0	0.10	0.38	0.73	0.77	2.02	12744	1683	6	0	0	0	0	logfile
✔	7MSX	23971	2024-11-14	2021-05-12	3.15	3.24	3.04	3.2	0.008	0.62	0.0	0.05	10.30	0.00	2.385	0.81	0.00	1.9	98.1	0.0	0.06	0.77	0.85	3.76	3.2	0.003	0.54	0.0	0.04	15.30	0.00	2.494	3.53	1.47	1.5	98.5	0.0	0.89	1.12	0.78	0.88	3.22	3706	473	2	0	3	0	0	logfile
✔	7oHC	12900	2024-11-16	2021-05-10	2.5	3.15	—	2.9	0.005	0.86	0.0	0.05	29.62	0.01	2.193	4.51	0.16	1.9	98.1	0.0	0.04	0.84	0.82	3.50	2.9	0.005	0.60	0.0	0.03	28.62	0.00	2.184	7.48	2.20	2.0	98.0	0.0	2.71	1.12	0.86	0.86	3.06	12019	764	10	290	0	0	0	logfile
✔	7oHB	12899	2024-11-17	2021-05-10	3.4	3.61	—	3.4	0.005	0.86	0.0	0.05	28.69	0.01	2.254	4.48	0.89	2.6	97.4	0.0	-2.05	0.89	0.86	3.09	3.4	0.004	0.65	0.0	0.04	27.56	0.00	2.404	8.63	1.27	2.1	97.9	0.0	1.49	1.18	0.90	0.88	2.60	13424	943	11	290	0	0	0	logfile
✔	7oH9	12897	2024-11-17	2021-05-09	3.0	3.38	—	3.0	0.007	0.84	0.0	0.05	25.97	0.01	2.234	5.13	0.00	2.7	97.3	0.0	-0.54	0.89	0.87	2.74	3.0	0.004	0.75	0.0	0.04	26.80	0.00	2.464	10.29	1.64	3.0	97.0	0.0	1.23	1.15	0.90	0.89	2.50	15099	1144	13	290	0	0	0	logfile
✔	7oHA	12898	2024-11-17	2021-05-09	2.9	3.29	—	3.0	0.005	0.91	1.0	0.06	25.98	0.01	2.248	5.05	0.00	1.4	98.6	0.0	0.60	0.85	0.85	2.29	3.0	0.004	0.66	0.0	0.04	26.17	0.00	2.297	9.98	1.63	1.7	98.3	0.0	1.73	0.51	0.86	0.88	2.66	14215	1159	13	244	0	0	0	logfile

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