Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MR0	23952	2024-11-19	2021-05-07	3.7	4.10	—	4.0	0.003	0.81	0.0	0.05	15.13	0.01	2.284	4.14	0.44	5.8	94.2	0.0	-1.82	0.84	0.82	1.66	4.0	0.005	0.66	0.0	0.04	16.45	0.00	2.466	6.75	1.70	7.1	92.9	0.0	-0.47	0.35	0.85	0.83	1.84	19282	2400	3	0	0	0	0	logfile
✔	7MR4	23956	2024-11-18	2021-05-07	4.5	4.68	—	4.5	0.004	0.86	0.0	0.05	17.06	0.01	2.014	7.21	0.00	5.4	94.6	0.0	-1.71	0.82	0.81	—	4.5	0.003	0.62	0.0	0.04	16.88	0.00	2.418	11.28	0.00	5.5	94.5	0.0	-0.08	0.46	0.82	0.82	—	17203	2057	5	33	0	0	0	logfile
✔	7MR2	23954	2024-11-18	2021-05-07	4.3	4.72	—	4.5	0.003	0.75	0.0	0.05	14.96	0.01	2.257	5.77	0.00	5.1	94.9	0.0	-1.32	0.90	0.84	—	4.5	0.003	0.60	0.0	0.04	14.99	0.00	2.376	8.83	0.00	6.4	93.6	0.0	-0.11	1.17	0.90	0.85	—	16671	2075	3	0	0	0	0	logfile
✔	7oGP	12885	2024-11-18	2021-05-07	3.3	3.42	3.38	3.4	0.003	0.69	0.0	0.05	14.59	0.01	2.287	3.63	0.27	4.3	95.7	0.0	-4.75	0.56	0.73	1.16	3.4	0.003	0.77	0.0	0.04	16.54	0.00	2.380	5.56	3.37	5.4	94.6	0.0	-1.00	0.76	0.69	0.86	1.80	17171	2144	6	0	1	0	0	logfile
✔	7MR1	23953	2024-11-19	2021-05-07	4.2	4.74	—	4.6	0.003	0.78	0.0	0.05	14.91	0.01	2.237	5.74	0.00	5.5	94.5	0.0	-1.78	0.85	0.84	—	4.6	0.004	0.66	0.0	0.04	14.93	0.00	2.489	9.31	0.00	7.2	92.7	0.0	-0.67	0.34	0.85	0.84	—	18473	2316	3	0	0	0	0	logfile
✔	7oGR	12886	2024-11-17	2021-05-07	3.0	3.10	2.89	3.1	0.003	0.69	0.0	0.05	13.65	0.01	2.309	3.41	0.00	5.2	94.8	0.0	-4.69	0.68	0.80	2.46	3.1	0.003	0.61	0.0	0.04	16.25	0.00	2.481	5.93	1.77	4.8	95.2	0.0	-0.88	1.02	0.69	0.84	2.48	14135	1775	7	0	1	0	0	logfile
✔	7oH0	12890	2024-11-14	2021-05-07	3.9	4.55	—	4.3	0.005	0.92	0.0	0.05	13.94	0.01	2.046	29.13	0.26	11.9	87.9	0.1	-5.70	0.80	0.71	1.16	4.3	0.003	0.79	0.0	0.05	15.91	0.01	2.113	16.30	2.48	7.7	92.3	0.0	-3.21	1.42	0.79	0.69	1.15	6830	870	3	0	0	0	0	logfile
✔	7MQS	23951	2024-11-17	2021-05-06	4.4	4.79	4.46	4.4	0.015	1.73	7.0	0.10	15.00	0.01	2.416	3.33	0.00	9.6	89.8	0.6	-3.94	0.83	0.76	—	4.4	0.003	0.75	0.0	0.05	13.93	0.00	2.363	13.07	0.00	8.9	90.7	0.4	-1.78	0.63	0.84	0.78	—	14028	1739	8	0	0	0	0	logfile
✔	7oGM	12884	2024-11-19	2021-05-06	3.7	3.96	3.87	3.8	0.015	1.84	9.0	0.11	17.32	0.01	2.245	5.94	3.12	3.6	96.3	0.0	-1.16	0.85	0.83	2.45	3.8	0.003	0.66	0.0	0.04	16.57	0.00	2.518	5.23	3.19	3.0	97.0	0.0	0.85	1.26	0.84	0.81	1.87	17683	2454	10	49	0	0	0	logfile
✔	7oGL	12883	2024-11-17	2021-05-06	3.4	3.47	3.42	3.5	0.016	1.97	20.0	0.12	13.71	0.01	2.082	6.91	1.70	4.9	95.1	0.0	-1.18	0.65	0.77	2.25	3.4	0.003	0.63	0.0	0.04	15.93	0.00	2.457	4.45	2.27	3.4	96.6	0.0	0.59	0.86	0.72	0.83	2.47	14763	2079	6	0	0	3	0	logfile
✔	7MQR	23950	2024-11-18	2021-05-06	4.1	4.43	4.11	4.2	0.007	1.32	0.0	0.07	15.73	0.01	2.382	3.72	0.60	9.7	89.9	0.3	-3.42	0.85	0.80	—	4.2	0.003	0.66	0.0	0.05	13.94	0.00	2.429	8.88	0.00	7.0	92.8	0.2	-1.18	0.49	0.85	0.82	—	14878	1810	12	0	20	0	0	logfile
✔	7oGK	12882	2024-11-17	2021-05-06	3.4	4.11	3.60	3.7	0.014	1.75	3.0	0.11	13.82	0.01	2.293	3.59	1.65	4.0	96.0	0.0	-0.55	0.84	0.82	2.48	3.7	0.004	0.61	0.0	0.04	14.50	0.00	2.601	3.94	1.50	2.7	97.3	0.0	0.99	1.17	0.83	0.81	2.35	14731	2085	7	8	0	17	0	logfile
✔	7oG5	12878	2024-11-18	2021-05-06	3.37	3.57	—	3.6	0.010	0.95	0.0	0.05	14.71	0.01	2.021	19.65	0.00	10.1	89.9	0.0	-1.60	0.63	0.82	2.97	3.6	0.004	0.74	0.0	0.04	17.15	0.01	2.359	12.33	2.33	6.7	93.3	0.0	0.53	0.63	0.60	0.80	1.89	15444	1892	12	0	0	0	0	logfile
✔	7MQo	23949	2024-11-16	2021-05-06	3.4	3.62	3.43	3.7	0.004	0.71	0.0	0.05	14.61	0.01	2.030	10.26	0.17	13.1	86.7	0.2	-2.87	0.67	0.75	1.17	3.7	0.004	0.69	0.0	0.05	16.51	0.00	2.374	7.49	2.45	12.6	87.2	0.2	-2.67	0.50	0.71	0.80	1.78	10642	1288	10	0	16	0	0	logfile
✔	7oG6	12879	2024-11-13	2021-05-06	3.3	3.47	—	2.9	0.008	0.82	0.0	0.04	18.38	0.01	2.325	7.36	6.10	9.6	90.4	0.0	-4.47	0.28	0.82	2.77	2.9	0.003	0.65	0.0	0.04	17.44	0.01	2.519	5.44	3.05	5.1	94.9	0.0	-0.49	0.53	0.27	0.84	2.91	1602	199	2	5	0	0	0	logfile
✔	7MQi	23948	2024-11-20	2021-05-05	3.21	3.01	3.19	3.2	0.006	0.79	0.0	0.05	13.51	0.00	2.202	2.71	0.59	1.4	98.6	0.0	0.80	0.67	0.81	4.51	3.1	0.003	0.49	0.0	0.04	15.29	0.00	2.574	2.42	1.01	2.8	97.2	0.0	1.04	1.79	0.74	0.86	4.25	12696	1640	16	16	0	0	0	logfile
✔	7MQB	23941	2024-11-20	2021-05-05	3.25	3.29	3.22	3.3	0.007	0.72	0.0	0.05	14.34	0.00	2.302	2.48	0.66	0.5	99.5	0.0	1.28	0.81	0.86	4.28	3.3	0.002	0.48	0.0	0.04	15.33	0.00	2.439	2.48	1.73	2.5	97.5	0.0	1.23	0.37	0.82	0.89	4.59	12760	1640	16	16	0	0	0	logfile
✔	7MQE	23944	2024-11-20	2021-05-05	3.69	3.22	3.67	3.5	0.008	0.84	0.0	0.06	14.66	0.00	2.308	1.58	0.77	1.7	98.3	0.0	0.67	0.75	0.81	3.89	3.5	0.003	0.51	0.0	0.04	15.38	0.00	2.565	1.92	0.58	2.6	97.4	0.0	1.22	0.41	0.79	0.83	3.55	12163	1629	16	16	0	0	0	logfile
✔	7MQG	23946	2024-11-20	2021-05-05	3.25	3.02	3.18	3.1	0.006	0.78	0.0	0.05	13.51	0.00	2.191	2.87	0.00	1.2	98.8	0.0	0.73	0.72	0.82	4.53	3.1	0.006	0.62	0.0	0.05	15.41	0.00	2.501	2.71	1.01	3.4	96.6	0.0	0.43	0.41	0.77	0.87	4.21	12670	1640	16	16	0	0	0	logfile
✔	7MQD	23943	2024-11-19	2021-05-05	3.25	3.21	3.21	3.3	0.003	0.62	0.0	0.05	14.59	0.00	2.456	1.98	0.00	1.0	99.0	0.0	1.04	0.75	0.83	3.89	3.3	0.004	0.51	0.0	0.04	15.71	0.00	2.589	2.33	0.76	1.0	99.0	0.0	1.40	0.30	0.77	0.87	4.39	11960	1592	16	16	0	0	0	logfile

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