Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MQF	23945	2024-11-20	2021-05-05	2.88	2.74	2.86	2.8	0.006	0.72	0.0	0.06	13.21	0.00	2.175	1.01	0.00	0.5	99.5	0.0	1.24	0.72	0.87	6.16	2.8	0.002	0.47	0.0	0.04	14.51	0.00	2.533	1.34	0.00	1.5	98.5	0.0	1.42	0.28	0.78	0.90	5.71	12288	1608	16	16	0	0	0	logfile
✔	7MQi	23948	2024-11-20	2021-05-05	3.21	3.01	3.19	3.2	0.006	0.79	0.0	0.05	13.51	0.00	2.202	2.71	0.59	1.4	98.6	0.0	0.80	0.67	0.81	4.51	3.1	0.003	0.49	0.0	0.04	15.29	0.00	2.574	2.42	1.01	2.8	97.2	0.0	1.04	1.79	0.74	0.86	4.25	12696	1640	16	16	0	0	0	logfile
✔	7MPG	23933	2024-11-19	2021-05-04	3.4	3.98	—	4.0	0.003	0.71	0.0	0.06	13.66	0.00	1.908	15.24	0.00	6.1	93.7	0.2	-1.25	0.57	0.67	1.15	3.9	0.005	0.80	0.0	0.05	16.50	0.01	2.118	12.55	3.45	5.6	94.3	0.2	-0.77	0.88	0.59	0.81	1.16	20366	2640	12	0	3	0	0	logfile
✔	7MPE	23932	2024-11-16	2021-05-04	3.2	3.91	—	3.8	0.005	0.69	0.0	0.04	14.10	0.00	2.174	14.62	0.00	6.9	93.1	0.0	-2.52	0.62	0.77	2.09	3.8	0.003	0.62	0.0	0.04	15.95	0.00	2.495	9.73	2.88	5.0	95.0	0.0	-0.61	0.39	0.64	0.79	1.12	11214	1428	1	0	0	0	0	logfile
✔	7oEB	12863	2024-11-16	2021-05-02	3.04	3.38	3.05	3.0	0.004	0.56	0.0	0.04	14.78	0.00	2.121	7.62	0.53	4.0	95.7	0.2	0.94	0.87	0.82	3.00	3.0	0.002	0.52	0.0	0.04	15.81	0.00	2.018	6.21	0.38	3.6	96.4	0.0	1.61	1.78	0.90	0.88	2.69	11682	1434	3	6	3	1	0	logfile
✔	7oEA	12862	2024-11-16	2021-05-02	2.7	3.26	2.79	2.6	0.004	0.77	2.0	0.06	13.35	0.00	2.061	6.12	0.08	4.5	95.3	0.2	0.83	0.90	0.85	3.30	2.7	0.006	0.69	0.0	0.04	15.03	0.00	1.921	6.12	0.53	5.0	95.0	0.1	1.16	0.74	0.92	0.91	3.22	11703	1432	4	7	2	17	0	logfile
✔	7oE7	12861	2024-11-16	2021-05-01	3.73	3.95	3.97	3.7	0.002	0.53	0.0	0.04	14.33	0.00	2.084	3.86	0.00	6.8	93.2	0.0	-1.48	0.79	0.64	0.91	3.7	0.003	0.68	0.0	0.04	16.38	0.00	2.058	6.55	2.38	6.7	93.3	0.0	-0.84	1.35	0.85	0.76	0.90	11116	1382	2	0	2	0	0	logfile
✔	7oE3	12860	2024-11-16	2021-05-01	3.35	4.05	3.43	3.4	0.003	0.52	0.0	0.04	15.39	0.00	2.179	5.99	3.39	8.2	91.8	0.0	-2.02	0.92	0.87	2.22	3.4	0.002	0.59	0.0	0.04	16.18	0.00	2.145	4.40	1.92	6.5	93.5	0.0	0.32	0.43	0.93	0.89	1.51	11904	1478	2	0	2	0	0	logfile
✔	7MoC	23924	2024-11-17	2021-05-01	4.56	3.76	4.47	3.7	0.012	1.82	17.0	0.11	13.17	0.02	2.211	1.99	0.19	1.7	98.3	0.0	-0.04	0.58	0.68	—	3.7	0.004	0.75	0.0	0.04	14.24	0.00	2.359	15.85	0.00	1.8	98.2	0.0	2.10	1.61	0.58	0.70	—	13883	1755	2	0	0	0	0	logfile
✔	7oE0	12856	2024-11-18	2021-04-30	2.69	2.88	2.81	2.8	0.014	1.07	0.0	0.06	24.11	0.01	1.980	24.23	0.00	10.1	89.9	0.0	-2.59	0.77	0.72	2.51	2.8	0.003	0.66	0.0	0.04	23.73	0.00	2.013	13.33	2.36	8.7	91.3	0.0	-1.31	0.40	0.76	0.70	1.83	50296	2208	29	1510	0	530	0	logfile
✔	7oE1	12857	2024-11-18	2021-04-30	3.05	3.27	3.30	3.0	0.009	0.93	0.0	0.05	23.98	0.01	1.947	32.22	0.00	15.1	84.9	0.0	-3.75	0.82	0.72	2.04	3.0	0.005	0.74	0.0	0.04	23.60	0.01	2.018	17.01	3.23	12.3	87.7	0.0	-2.63	0.51	0.85	0.77	1.31	51092	2320	21	1530	0	0	0	logfile
✔	7MN8	23918	2024-11-17	2021-04-30	3.45	3.96	3.53	3.8	0.012	1.32	0.0	0.07	11.57	0.01	2.340	1.46	0.14	1.8	98.0	0.1	-0.03	0.84	0.83	2.13	3.8	0.004	0.90	1.0	0.05	13.67	0.00	2.324	7.46	1.39	2.8	97.1	0.1	0.13	1.45	0.85	0.84	2.46	12947	1661	10	0	13	0	0	logfile
✔	7MN6	23917	2024-11-15	2021-04-30	3.09	3.68	3.18	3.5	0.013	1.51	0.0	0.08	11.93	0.01	2.392	0.37	0.00	3.5	96.4	0.2	-0.15	0.85	0.85	3.26	3.5	0.003	0.63	0.0	0.05	13.64	0.00	2.524	3.40	0.38	3.8	96.1	0.1	0.22	1.39	0.84	0.86	3.12	9649	1227	8	0	13	0	0	logfile
✔	7oDF	12827	2024-11-14	2021-04-29	2.66	3.20	—	3.1	0.003	0.49	0.0	0.04	19.38	0.00	1.952	6.12	0.00	1.4	98.6	0.0	1.47	0.75	0.83	3.58	3.1	0.003	0.53	0.0	0.04	20.24	0.00	1.995	7.39	2.35	2.1	97.9	0.0	1.74	0.88	0.70	0.81	3.51	6847	703	7	78	2	5	0	logfile
✔	7MLV	23911	2024-11-18	2021-04-29	4.1	4.82	—	3.9	0.005	1.02	0.0	0.06	15.50	0.01	2.168	5.10	0.00	7.1	92.9	0.0	-5.14	0.62	0.41	—	3.9	0.004	0.81	0.0	0.05	12.36	0.00	2.518	17.06	0.00	8.6	91.4	0.0	-3.19	1.68	0.70	0.69	—	15055	1919	16	0	22	0	0	logfile
✔	7EQ1	31254	2024-11-15	2021-04-28	3.3	2.26	—	2.0	0.003	0.58	0.0	0.04	13.83	0.00	2.113	10.24	0.00	6.5	93.5	0.0	-0.59	0.75	0.74	3.06	2.0	0.004	0.93	0.0	0.04	15.99	0.00	2.246	10.24	2.87	6.2	93.8	0.0	-0.20	0.33	0.75	0.77	2.58	8999	1150	5	0	0	0	0	logfile
✔	7oCY	12816	2024-11-15	2021-04-28	4.25	4.55	4.29	4.4	0.003	0.62	0.0	0.04	12.49	0.00	1.980	9.97	0.00	4.9	95.1	0.0	-0.08	0.73	0.77	—	4.4	0.003	0.67	0.0	0.04	12.70	0.00	2.407	8.40	0.00	2.8	97.2	0.0	0.94	1.14	0.74	0.78	—	7994	1243	3	0	0	0	0	logfile
✔	7ML7	23909	2024-11-16	2021-04-27	3.17	3.27	—	3.3	0.004	0.75	0.0	0.05	16.19	0.01	2.116	5.73	0.48	7.8	92.1	0.1	-3.39	0.74	0.81	2.84	3.3	0.003	0.61	0.0	0.04	17.02	0.00	2.023	6.38	3.23	6.8	93.2	0.0	-0.68	1.33	0.75	0.83	2.45	10913	1354	3	0	1	0	0	logfile
✔	7oCF	12806	2024-11-18	2021-04-26	3.6	3.48	—	3.5	0.018	0.95	0.0	0.11	14.25	0.00	2.067	5.05	0.00	4.2	95.8	0.0	0.18	0.68	0.78	3.00	3.5	0.004	0.82	2.0	0.05	14.77	0.00	2.208	6.97	2.42	2.4	97.6	0.0	1.33	1.24	0.69	0.82	2.40	17088	2298	15	0	30	0	0	logfile
✔	7oCH	12807	2024-11-15	2021-04-26	3.14	3.53	3.21	3.2	0.003	0.54	0.0	0.04	15.97	0.00	2.072	3.99	3.80	6.6	93.4	0.0	-2.88	0.89	0.86	2.83	3.2	0.003	0.59	0.0	0.04	16.40	0.00	2.064	2.73	2.87	6.3	93.7	0.0	-0.03	0.47	0.91	0.90	2.65	9516	1181	2	0	2	0	0	logfile

• ← previous
• Page 304 of 424
• next →