Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7EPB	31236	2024-11-18	2021-04-26	3.1	3.55	—	3.4	0.004	0.62	0.0	0.06	13.84	0.00	2.292	8.87	0.08	4.5	95.5	0.0	-1.65	0.63	0.74	1.33	3.3	0.003	0.66	0.0	0.04	15.31	0.00	2.348	11.68	3.35	5.7	94.3	0.0	-0.35	0.59	0.66	0.80	1.81	13104	1794	6	0	2	0	0	logfile
✔	7EPD	31238	2024-11-18	2021-04-26	3.9	2.74	—	3.5	0.002	0.45	0.0	0.04	12.27	0.00	2.232	7.06	0.00	4.0	96.0	0.0	-2.46	0.69	0.63	0.57	3.5	0.003	0.62	0.0	0.04	14.39	0.00	2.553	10.89	3.85	5.2	94.8	0.0	-0.05	0.58	0.75	0.74	1.31	10710	1569	2	0	0	0	0	logfile
✔	7EPC	31237	2024-11-18	2021-04-26	4.0	3.34	—	3.7	0.002	0.50	0.0	0.04	11.28	0.00	2.295	4.60	0.00	2.5	97.5	0.0	-2.98	0.62	0.48	—	3.7	0.003	0.69	0.0	0.04	14.86	0.00	2.597	5.87	2.87	4.5	95.5	0.0	-0.60	1.67	0.75	0.76	—	11216	1564	2	0	0	0	0	logfile
✔	7oCH	12807	2024-11-15	2021-04-26	3.14	3.53	3.21	3.2	0.003	0.54	0.0	0.04	15.97	0.00	2.072	3.99	3.80	6.6	93.4	0.0	-2.88	0.89	0.86	2.83	3.2	0.003	0.59	0.0	0.04	16.40	0.00	2.064	2.73	2.87	6.3	93.7	0.0	-0.03	0.47	0.91	0.90	2.65	9516	1181	2	0	2	0	0	logfile
✔	7oCF	12806	2024-11-18	2021-04-26	3.6	3.48	—	3.5	0.018	0.95	0.0	0.11	14.25	0.00	2.067	5.05	0.00	4.2	95.8	0.0	0.18	0.68	0.78	3.00	3.5	0.004	0.82	2.0	0.05	14.77	0.00	2.208	6.97	2.42	2.4	97.6	0.0	1.33	1.24	0.69	0.82	2.40	17088	2298	15	0	30	0	0	logfile
✔	7oBQ	12799	2024-11-18	2021-04-23	3.9	4.22	—	3.9	0.003	0.48	0.0	0.03	17.78	0.00	2.106	9.19	2.63	2.7	97.3	0.0	1.55	0.76	0.79	0.82	3.9	0.006	0.85	0.0	0.04	19.46	0.00	1.792	17.11	2.85	4.2	95.8	0.0	0.43	1.25	0.77	0.82	1.17	16668	1642	12	165	39	0	0	logfile
✔	7MKF	23871	2024-11-16	2021-04-23	3.0	3.23	—	4.1	0.022	1.99	0.0	0.09	11.33	0.01	2.198	1.23	0.00	7.7	92.3	0.0	-1.78	0.48	0.63	2.98	3.5	0.004	0.80	0.0	0.05	14.89	0.00	2.257	15.14	2.03	7.3	92.7	0.0	-2.98	2.97	0.47	0.64	2.54	11370	730	10	0	0	0	5800	logfile
✔	7MKG	23890	2024-11-16	2021-04-23	3.07	3.13	—	4.0	0.023	1.98	0.0	0.10	10.38	0.01	2.409	0.44	0.00	5.6	94.4	0.0	-1.46	0.47	0.65	2.63	4.1	0.004	0.67	0.0	0.05	13.79	0.00	2.407	13.91	2.19	6.6	93.4	0.0	-2.53	2.01	0.47	0.71	2.61	11370	730	10	0	0	0	5800	logfile
✔	7oB4	12794	2024-11-15	2021-04-21	3.22	3.25	—	3.5	0.009	1.03	0.0	0.07	13.89	0.00	2.206	23.16	0.09	3.7	96.3	0.0	-4.30	0.54	0.78	4.06	3.5	0.006	0.78	0.0	0.05	15.10	0.00	2.393	15.36	2.38	7.3	92.7	0.0	-4.14	1.20	0.44	0.75	4.57	10066	1288	14	0	0	0	0	logfile
✔	7MK2	23884	2024-11-14	2021-04-21	3.8	3.60	3.84	3.6	0.004	0.69	0.0	0.04	14.23	0.00	2.228	8.87	0.00	7.7	92.3	0.0	-1.60	0.63	0.77	0.81	3.6	0.003	0.67	0.0	0.04	16.25	0.00	2.511	7.19	2.79	5.4	94.6	0.0	-0.95	1.43	0.63	0.77	0.77	5333	708	4	0	2	0	0	logfile
✔	7MJL	23877	2024-11-14	2021-04-20	2.95	3.62	—	3.3	0.005	0.82	0.0	0.05	12.25	0.01	2.351	2.77	0.00	3.9	96.1	0.0	-0.85	0.80	0.87	3.95	3.3	0.003	0.57	0.0	0.04	14.76	0.00	2.447	4.68	1.13	2.8	97.2	0.0	0.36	0.42	0.80	0.87	3.60	4788	621	4	0	1	0	0	logfile
✔	7MJi	23874	2024-11-14	2021-04-20	2.81	3.32	—	3.2	0.006	0.81	0.0	0.05	12.49	0.01	2.367	2.85	0.00	2.8	97.2	0.0	-0.83	0.56	0.84	4.52	3.2	0.003	0.58	0.0	0.04	15.08	0.00	2.546	5.90	2.21	2.2	97.8	0.0	-0.02	1.43	0.56	0.85	4.66	2522	320	3	0	1	0	0	logfile
✔	7MJQ	23882	2024-11-18	2021-04-20	4.2	4.29	—	4.2	0.009	1.55	0.0	0.15	11.99	0.01	1.552	6.01	0.00	9.4	90.6	0.0	-1.25	0.52	0.66	—	4.2	0.005	0.89	0.0	0.05	10.81	0.00	2.367	1.47	0.00	15.4	84.5	0.1	-2.10	1.84	0.60	0.76	—	14976	2982	13	0	10	0	0	logfile
✔	7MJo	23880	2024-11-20	2021-04-20	4.0	4.18	—	4.1	0.008	1.06	0.0	0.05	16.27	0.01	1.857	8.45	0.00	9.0	91.0	0.0	-1.30	0.57	0.76	—	4.1	0.003	0.63	0.0	0.04	15.64	0.00	2.404	5.73	3.21	6.0	94.0	0.0	0.15	2.38	0.57	0.76	—	19977	2981	13	0	25	0	0	logfile
✔	7MJN	23879	2024-11-14	2021-04-20	3.29	4.21	—	3.7	0.005	0.84	0.0	0.05	13.38	0.01	2.295	3.37	0.00	2.4	97.6	0.0	-1.29	0.88	0.85	2.95	3.7	0.003	0.60	0.0	0.04	14.57	0.00	2.604	6.90	0.57	1.8	98.1	0.1	1.22	0.37	0.88	0.85	2.49	6526	797	4	0	5	0	0	logfile
✔	7MJS	23883	2024-11-14	2021-04-20	3.03	3.31	3.09	3.2	0.005	0.76	1.0	0.06	14.03	0.01	2.228	8.63	0.00	4.7	95.3	0.0	-3.02	0.63	0.83	3.58	3.2	0.004	0.61	0.0	0.04	15.55	0.00	2.496	7.81	3.21	4.3	95.7	0.0	0.26	0.39	0.63	0.85	2.84	5536	703	4	0	3	0	0	logfile
✔	7MJP	23881	2024-11-17	2021-04-20	4.2	4.40	—	4.3	0.008	1.11	0.0	0.07	10.54	0.01	1.477	2.76	0.00	9.1	90.9	0.0	-1.16	0.51	0.65	—	4.3	0.002	0.62	0.0	0.05	8.32	0.00	2.518	0.24	0.00	7.4	92.6	0.0	-0.39	1.34	0.55	0.68	—	14163	2818	10	0	8	0	0	logfile
✔	7oAE	12775	2024-11-17	2021-04-19	2.0	2.65	—	2.2	0.008	0.53	0.0	0.05	9.44	0.00	2.440	0.99	0.00	2.6	97.4	0.0	0.22	0.77	0.91	6.46	2.2	0.002	0.54	0.0	0.04	14.87	0.00	2.602	5.09	0.77	1.1	98.9	0.0	0.42	2.66	0.78	0.93	6.31	12768	1680	42	0	0	0	0	logfile
✔	7oAG	12776	2024-11-14	2021-04-19	3.4	3.78	—	3.4	0.007	0.67	0.0	0.05	10.39	0.00	2.025	5.52	0.00	5.3	94.7	0.0	-0.35	0.81	0.88	3.22	3.4	0.006	0.76	0.0	0.05	13.39	0.00	2.453	6.76	0.39	0.3	99.7	0.0	-0.39	2.12	0.82	0.91	4.45	7600	1000	25	0	0	0	0	logfile
✔	7ENN	31217	2024-11-18	2021-04-18	2.8	3.21	—	3.1	0.006	0.68	0.0	0.04	25.22	0.00	2.127	7.99	0.00	4.5	95.4	0.1	-0.16	0.84	0.87	4.06	3.1	0.004	0.63	0.0	0.04	26.14	0.01	2.108	5.73	0.91	4.4	95.6	0.0	1.23	0.30	0.83	0.89	3.30	16319	1300	12	292	2	0	0	logfile

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