Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Mi4	23839	2024-11-18	2021-04-16	3.2	3.56	—	3.5	0.009	0.98	0.0	0.05	18.97	0.01	1.590	13.93	5.83	8.4	91.5	0.1	-1.33	0.79	0.83	2.21	3.5	0.003	0.63	0.0	0.04	18.60	0.00	2.123	7.74	1.09	5.4	94.5	0.1	0.08	1.35	0.78	0.84	2.14	17162	1978	15	70	10	0	0	logfile
✔	7Mi8	23842	2024-11-17	2021-04-16	3.7	4.01	3.56	3.8	0.006	0.97	0.0	0.05	14.13	0.01	2.226	5.27	0.38	2.4	97.4	0.1	-3.11	0.79	0.84	2.27	3.9	0.003	0.72	0.0	0.04	16.41	0.00	2.516	7.69	2.43	3.6	96.4	0.0	0.95	0.82	0.81	0.85	1.40	7034	868	1	0	0	0	0	logfile
✔	7Mi9	23843	2024-11-18	2021-04-16	3.89	3.92	—	3.7	0.006	0.91	1.0	0.05	24.16	0.01	2.008	38.70	2.08	13.2	86.3	0.6	-3.37	0.70	0.48	0.55	3.6	0.005	0.97	1.0	0.04	24.45	0.01	2.050	22.17	3.01	9.3	90.7	0.1	-2.38	2.53	0.75	0.61	1.13	15924	1554	10	170	0	0	0	logfile
✔	7ENG	31210	2024-11-14	2021-04-16	3.59	3.86	—	3.8	0.007	0.83	0.0	0.05	17.37	0.00	2.204	14.32	0.36	7.4	92.6	0.0	-2.69	0.55	0.79	2.68	3.8	0.003	0.63	0.0	0.04	15.64	0.00	2.457	8.45	2.54	6.5	93.5	0.0	-1.94	1.61	0.54	0.78	2.26	4954	640	4	0	2	0	0	logfile
✔	7Mi5	23840	2024-11-18	2021-04-16	3.57	3.95	—	3.9	0.010	1.47	4.0	0.06	21.22	0.01	1.662	35.40	11.95	9.4	90.5	0.1	-2.45	0.68	0.65	0.89	3.9	0.003	0.76	0.0	0.04	19.12	0.00	2.081	10.94	2.82	6.0	94.0	0.0	-0.10	2.11	0.75	0.78	1.33	15469	1785	14	60	7	0	0	logfile
✔	7EN0	31197	2024-11-14	2021-04-15	2.97	3.38	3.13	3.4	0.007	1.08	0.0	0.05	17.39	0.01	2.299	8.99	4.80	4.2	95.1	0.6	-3.26	0.50	0.77	2.43	3.3	0.003	0.62	0.0	0.04	17.02	0.00	2.609	8.31	1.31	3.6	96.4	0.0	1.69	0.46	0.58	0.82	2.31	7239	939	6	0	6	0	0	logfile
✔	7MGW	23830	2024-11-14	2021-04-13	3.5	3.79	—	4.0	0.003	0.64	0.0	0.04	13.53	0.00	2.292	9.19	1.40	2.9	97.1	0.0	-2.49	0.39	0.53	1.34	4.0	0.004	0.65	0.0	0.04	15.15	0.00	2.532	11.19	3.74	5.9	94.1	0.0	-0.93	1.00	0.59	0.76	1.38	6223	765	5	0	18	0	0	logfile
✔	7o7F	12746	2024-11-16	2021-04-13	3.15	3.42	3.19	3.4	0.004	0.64	0.0	0.04	14.02	0.00	1.932	7.93	0.16	2.5	97.5	0.0	0.48	0.70	0.77	2.29	3.4	0.004	0.65	0.0	0.04	15.83	0.00	2.477	7.93	2.34	2.6	97.4	0.0	0.17	0.52	0.68	0.74	2.06	11170	1420	7	0	0	0	0	logfile
✔	7MGL	23828	2024-11-18	2021-04-12	2.9	3.03	—	3.0	0.013	0.84	0.0	0.04	15.84	0.00	2.032	5.52	3.10	5.1	94.9	0.0	-1.33	0.64	0.84	3.67	3.0	0.003	0.61	0.0	0.04	15.96	0.00	2.475	4.16	2.38	5.0	95.0	0.0	1.99	0.82	0.65	0.87	3.19	15476	1888	8	0	8	0	0	logfile
✔	7o6P	12739	2024-11-15	2021-04-12	2.04	2.55	—	2.1	0.008	0.59	0.0	0.05	11.73	0.00	2.140	6.08	0.93	1.8	98.2	0.0	-0.54	0.90	0.88	5.90	2.1	0.004	0.51	0.0	0.04	13.59	0.00	2.611	4.16	0.46	1.8	98.2	0.0	1.77	0.38	0.90	0.92	5.33	8276	1022	8	0	0	268	0	logfile
✔	7o6Q	12740	2024-11-15	2021-04-12	1.88	2.21	—	1.9	0.010	0.71	0.0	0.05	12.80	0.01	2.115	4.83	1.25	3.2	96.8	0.0	-1.61	0.88	0.85	7.59	1.9	0.002	0.49	0.0	0.04	14.58	0.00	2.526	4.44	1.13	0.8	99.2	0.0	3.25	0.37	0.90	0.90	5.90	7999	997	8	0	0	399	0	logfile
✔	7ELN	31186	2024-11-18	2021-04-12	3.0	3.28	—	3.1	0.007	0.84	0.0	0.05	17.90	0.01	1.940	6.77	0.58	5.5	94.4	0.1	-3.03	0.86	0.84	2.72	3.1	0.005	0.64	0.0	0.04	18.52	0.00	2.400	6.77	1.74	5.6	94.4	0.0	0.13	1.18	0.86	0.87	2.66	48906	6209	26	172	0	0	0	logfile
✔	7ELM	31185	2024-11-18	2021-04-12	2.88	3.11	—	2.9	0.005	0.78	0.0	0.05	17.11	0.01	1.839	6.41	0.40	6.1	93.9	0.0	-3.08	0.85	0.82	2.81	2.9	0.004	0.61	0.0	0.04	17.81	0.00	2.421	6.40	1.47	5.7	94.3	0.0	0.04	0.46	0.87	0.87	2.59	47399	6201	22	120	0	0	0	logfile
✔	7ELE	31182	2024-11-16	2021-04-09	4.9	8.62	—	7.5	0.007	1.16	0.0	0.06	21.73	0.01	2.210	17.86	8.44	9.1	90.1	0.8	-3.55	0.87	0.71	—	7.5	0.003	0.75	0.0	0.04	18.77	0.00	2.130	20.07	0.00	8.2	91.6	0.2	-1.75	1.31	0.88	0.76	—	10733	1137	2	83	0	0	0	logfile
✔	7MFE	23814	2024-11-14	2021-04-09	4.07	3.82	—	3.8	0.002	0.59	0.0	0.04	15.26	0.00	1.387	18.00	0.41	6.6	93.4	0.0	-2.56	0.63	0.64	—	3.8	0.005	0.78	0.0	0.04	15.38	0.01	1.888	14.69	0.00	7.2	92.8	0.0	-1.11	0.58	0.62	0.64	—	6844	859	4	0	2	0	0	logfile
✔	7o6B	12737	2024-11-17	2021-04-09	3.88	4.21	4.15	3.8	0.003	0.67	0.0	0.04	11.54	0.01	2.128	6.00	0.38	4.3	95.7	0.0	-0.87	0.75	0.67	0.37	3.9	0.002	0.56	0.0	0.04	14.14	0.00	2.330	6.70	1.52	4.5	95.5	0.0	0.72	0.78	0.76	0.69	0.37	14200	879	1	0	0	0	7040	logfile
✔	7ELD	31181	2024-11-16	2021-04-09	4.6	9.12	—	7.4	0.012	1.41	6.0	0.11	20.42	0.00	2.446	8.52	10.68	2.9	96.2	0.9	3.37	0.79	0.50	—	7.1	0.003	0.71	0.0	0.04	19.07	0.00	2.179	21.11	0.00	5.5	94.1	0.5	0.03	1.45	0.89	0.77	—	11282	1137	2	109	0	0	0	logfile
✔	7ELC	31180	2024-11-16	2021-04-09	3.1	3.22	—	3.2	0.003	0.55	0.0	0.04	15.03	0.00	2.198	9.93	2.73	9.3	90.7	0.1	-3.03	0.70	0.80	3.23	3.2	0.004	0.65	0.0	0.04	16.99	0.00	2.221	9.08	4.02	9.4	90.5	0.1	-0.78	0.43	0.67	0.80	2.96	11754	1458	5	7	5	0	0	logfile
✔	7MFD	23813	2024-11-15	2021-04-09	3.66	3.14	—	3.1	0.004	0.67	1.0	0.04	15.47	0.00	2.112	17.69	0.20	7.1	92.9	0.0	-2.17	0.68	0.61	1.02	3.1	0.003	0.72	0.0	0.05	17.31	0.00	2.251	14.01	2.76	5.7	94.3	0.0	-1.63	0.45	0.68	0.60	1.03	9127	1147	6	0	3	0	0	logfile
✔	7ELA	31178	2024-11-16	2021-04-09	3.4	3.44	—	3.4	0.003	0.57	0.0	0.04	15.71	0.00	2.153	11.82	2.79	7.9	92.1	0.0	-2.61	0.72	0.78	2.61	3.4	0.003	0.65	0.0	0.04	16.91	0.00	2.371	10.71	2.72	6.9	93.1	0.0	-0.21	0.48	0.73	0.82	2.23	11791	1451	5	7	3	0	0	logfile

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