Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MFD	23813	2024-11-15	2021-04-09	3.66	3.14	—	3.1	0.004	0.67	1.0	0.04	15.47	0.00	2.112	17.69	0.20	7.1	92.9	0.0	-2.17	0.68	0.61	1.02	3.1	0.003	0.72	0.0	0.05	17.31	0.00	2.251	14.01	2.76	5.7	94.3	0.0	-1.63	0.45	0.68	0.60	1.03	9127	1147	6	0	3	0	0	logfile
✔	7MEZ	23808	2024-11-17	2021-04-08	2.89	3.32	—	3.2	0.003	0.56	0.0	0.04	13.14	0.00	2.187	9.00	0.07	3.3	96.5	0.2	0.61	0.78	0.82	3.00	3.2	0.003	0.57	0.0	0.04	15.39	0.00	2.490	7.62	1.61	3.8	96.1	0.1	0.81	0.35	0.77	0.83	2.56	12361	1536	2	0	0	0	0	logfile
✔	7MEX	23806	2024-11-18	2021-04-08	3.35	4.06	3.35	3.4	0.003	0.52	0.0	0.04	14.14	0.00	1.562	8.11	0.06	2.2	97.8	0.0	0.70	0.83	0.78	2.31	3.4	0.002	0.55	0.0	0.04	15.19	0.00	2.087	6.40	0.39	2.0	98.0	0.0	1.55	0.50	0.89	0.86	1.97	15941	1967	5	0	7	0	0	logfile
✔	7MET	23803	2024-11-14	2021-04-07	3.97	4.01	—	3.9	0.004	0.64	0.0	0.04	12.06	0.00	2.236	8.02	0.00	4.2	95.3	0.5	1.22	0.52	0.69	1.68	3.9	0.003	0.68	0.0	0.04	14.73	0.00	2.513	9.46	4.30	4.1	95.3	0.6	0.91	0.43	0.51	0.69	1.36	6521	1019	3	0	2	0	0	logfile
✔	7MDW	23782	2024-11-14	2021-04-06	3.58	2.25	3.45	1.5	0.002	0.55	0.0	0.04	12.68	0.00	2.293	8.46	0.00	6.5	93.5	0.0	-1.58	0.52	0.44	1.65	1.5	0.002	0.56	0.0	0.04	14.70	0.00	2.383	9.52	2.25	9.1	90.9	0.0	-2.53	0.99	0.55	0.47	2.15	3392	435	4	0	1	0	0	logfile
✔	7o4H	12718	2024-11-17	2021-04-06	3.4	4.30	—	4.1	0.005	0.85	0.0	0.05	13.96	0.01	2.106	15.70	0.00	14.3	85.7	0.0	-2.48	0.73	0.77	1.27	4.0	0.003	0.75	0.0	0.04	15.85	0.00	2.459	8.26	1.87	9.7	90.3	0.0	-1.20	0.49	0.72	0.76	1.37	14195	1780	4	0	0	0	0	logfile
✔	7MDT	23779	2024-11-18	2021-04-06	3.6	3.76	3.53	3.7	0.023	1.81	0.0	0.15	11.86	0.01	2.380	0.76	0.12	2.5	97.5	0.0	0.66	0.72	0.85	3.38	3.7	0.004	0.66	0.0	0.05	13.91	0.00	2.259	5.62	2.04	4.0	96.0	0.0	0.36	0.74	0.68	0.83	2.64	15956	1892	31	0	78	0	0	logfile
✔	7MDU	23780	2024-11-15	2021-04-06	3.3	3.35	3.19	3.3	0.023	1.76	2.0	0.14	10.79	0.01	2.302	1.10	0.00	2.1	97.9	0.0	0.65	0.51	0.86	4.32	3.3	0.003	0.62	0.0	0.04	13.68	0.00	2.438	5.25	3.07	3.4	96.6	0.0	0.15	0.72	0.51	0.88	3.21	8332	1018	17	0	33	0	0	logfile
✔	7EKP	31172	2024-11-18	2021-04-06	2.85	3.48	—	3.3	0.007	0.75	0.0	0.07	13.09	0.00	2.030	8.24	0.88	5.9	94.1	0.0	-0.90	0.68	0.81	3.05	3.3	0.003	0.64	0.0	0.05	14.45	0.00	2.535	5.54	0.88	5.5	94.5	0.0	0.15	0.42	0.59	0.76	2.87	16115	1980	15	0	25	0	0	logfile
✔	7EKT	31176	2024-11-18	2021-04-06	3.02	3.67	—	3.6	0.008	0.78	0.0	0.07	11.10	0.00	2.385	6.01	0.30	5.1	94.9	0.0	-1.97	0.66	0.80	3.29	3.6	0.003	0.62	0.0	0.05	12.22	0.00	2.481	4.48	1.01	5.9	94.1	0.0	-0.14	0.39	0.63	0.78	3.23	16195	1980	15	0	30	0	0	logfile
✔	7EKM	31170	2024-11-15	2021-04-05	3.6	3.84	—	3.9	0.005	1.19	0.0	0.05	13.13	0.01	2.215	6.00	4.77	6.4	92.9	0.7	-4.90	0.65	0.75	2.32	3.8	0.003	0.71	0.0	0.04	15.10	0.00	2.533	5.29	1.87	5.1	94.9	0.0	-2.19	1.19	0.68	0.84	1.34	9124	1162	2	0	0	0	0	logfile
✔	7EKi	31168	2024-11-18	2021-04-05	3.18	3.70	—	3.6	0.005	0.63	0.0	0.06	12.21	0.00	2.033	5.79	0.88	5.3	94.7	0.0	-1.88	0.69	0.81	2.83	3.6	0.003	0.56	0.0	0.04	13.27	0.00	2.557	2.77	0.53	5.8	94.2	0.0	-0.26	0.42	0.68	0.82	2.67	16005	1975	15	0	20	0	0	logfile
✔	7EKL	31169	2024-11-15	2021-04-05	3.5	3.66	—	3.6	0.005	1.13	0.0	0.05	11.15	0.01	2.141	5.25	0.81	2.9	96.9	0.2	-5.70	0.72	0.83	3.54	3.6	0.002	0.62	0.0	0.04	14.63	0.00	2.046	6.25	2.72	3.1	96.9	0.0	-0.26	1.51	0.73	0.85	2.32	9394	1180	4	0	4	0	0	logfile
✔	7o3V	12709	2024-11-18	2021-04-03	3.7	3.99	3.67	4.0	0.004	0.71	0.0	0.04	14.44	0.00	2.022	11.19	0.00	3.0	97.0	0.0	2.19	0.54	0.75	1.15	4.0	0.003	0.70	0.0	0.04	17.38	0.00	2.394	10.54	3.89	2.2	97.8	0.0	2.85	0.49	0.54	0.75	1.24	15742	2153	10	0	0	0	0	logfile
✔	7EK3	31167	2024-11-17	2021-04-03	2.7	2.73	2.64	2.7	0.018	1.85	5.0	0.08	14.91	0.01	2.231	2.51	1.66	0.6	99.4	0.0	-0.56	0.65	0.85	3.26	2.7	0.003	0.58	0.0	0.04	16.82	0.00	2.509	3.93	1.99	1.5	98.5	0.0	2.70	0.42	0.72	0.88	1.85	13505	1705	5	0	0	0	0	logfile
✔	7EK2	31166	2024-11-17	2021-04-03	2.7	2.78	2.66	2.7	0.017	1.77	0.0	0.08	13.89	0.01	2.244	3.05	0.99	0.9	99.1	0.0	0.00	0.58	0.80	3.67	2.8	0.007	0.70	0.0	0.05	16.34	0.01	2.491	2.79	2.11	1.7	98.3	0.0	1.46	0.38	0.71	0.87	3.09	13540	1705	5	0	0	0	0	logfile
✔	7EJK	31162	2024-11-15	2021-04-02	3.4	3.65	—	3.5	0.006	0.77	0.0	0.05	13.04	0.00	1.495	12.36	0.43	5.2	94.8	0.0	-0.01	0.70	0.83	2.22	3.5	0.005	0.85	0.0	0.05	15.97	0.00	2.339	9.43	2.67	5.8	94.1	0.1	0.11	1.01	0.71	0.85	1.57	8586	1093	6	0	1	0	0	logfile
✔	7EJE	31160	2024-11-14	2021-04-02	3.98	4.18	—	4.0	0.009	1.30	0.0	0.05	15.52	0.00	1.454	41.99	4.44	4.9	92.8	2.3	-2.37	0.58	0.73	1.42	4.0	0.004	0.77	0.0	0.04	18.50	0.00	1.876	13.91	3.76	4.5	94.6	1.0	0.35	4.28	0.63	0.84	0.94	7602	933	8	18	6	0	0	logfile
✔	7EJC	31158	2024-11-15	2021-04-02	2.97	3.25	—	3.0	0.011	1.18	0.0	0.05	16.42	0.00	1.616	11.47	4.17	5.2	94.4	0.3	-3.39	0.63	0.84	3.61	3.0	0.003	0.65	0.0	0.04	16.70	0.00	1.990	6.88	1.61	5.2	94.8	0.0	0.04	1.40	0.68	0.92	2.72	7485	930	7	9	9	0	0	logfile
✔	7EJU	31163	2024-11-17	2021-04-02	3.5	3.64	—	3.6	0.009	1.29	0.0	0.07	11.94	0.01	2.257	4.79	1.15	17.0	82.8	0.2	-5.48	0.72	0.79	3.13	3.6	0.006	0.84	0.0	0.05	15.19	0.00	1.970	8.70	3.32	14.9	85.0	0.1	-2.95	0.83	0.71	0.80	2.34	13713	1700	4	0	3	0	0	logfile

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