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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7EJK | 31162 | 2024-11-15 | 2021-04-02 | 3.4 | 3.65 | — | 3.5 | 0.006 | 0.77 | 0.0 | 0.05 | 13.04 | 0.00 | 1.495 | 12.36 | 0.43 | 5.2 | 94.8 | 0.0 | -0.01 | 0.70 | 0.83 | 2.22 | 3.5 | 0.005 | 0.85 | 0.0 | 0.05 | 15.97 | 0.00 | 2.339 | 9.43 | 2.67 | 5.8 | 94.1 | 0.1 | 0.11 | 1.01 | 0.71 | 0.85 | 1.57 | 8586 | 1093 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 7MC0 | 23752 | 2024-11-14 | 2021-04-01 | 3.3 | 3.73 | — | 3.7 | 0.012 | 1.62 | 8.0 | 0.10 | 12.73 | 0.01 | 1.925 | 7.84 | 1.19 | 3.9 | 95.8 | 0.3 | -0.86 | 0.65 | 0.81 | 2.48 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 14.68 | 0.00 | 2.516 | 5.22 | 1.45 | 3.8 | 96.2 | 0.0 | 0.85 | 1.80 | 0.64 | 0.82 | 2.09 | 7092 | 931 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7EJ6 | 31153 | 2024-11-14 | 2021-04-01 | 3.21 | 3.47 | — | 3.3 | 0.008 | 1.03 | 1.0 | 0.05 | 16.92 | 0.00 | 2.019 | 51.68 | 1.13 | 12.1 | 87.2 | 0.7 | -4.78 | 0.59 | 0.89 | 2.78 | 3.2 | 0.003 | 0.69 | 0.0 | 0.04 | 17.49 | 0.00 | 2.160 | 9.07 | 2.76 | 6.2 | 93.3 | 0.5 | -0.88 | 1.36 | 0.58 | 0.89 | 2.48 | 7584 | 948 | 7 | 9 | 6 | 0 | 0 | logfile |
✔ | 7EJA | 31157 | 2024-11-15 | 2021-04-01 | 3.6 | 4.27 | — | 4.1 | 0.005 | 0.85 | 2.0 | 0.06 | 13.82 | 0.00 | 1.533 | 17.71 | 0.11 | 6.0 | 94.0 | 0.0 | -0.43 | 0.70 | 0.80 | 1.56 | 4.1 | 0.004 | 0.84 | 0.0 | 0.04 | 15.89 | 0.00 | 2.414 | 14.25 | 2.90 | 5.3 | 94.7 | 0.0 | -0.35 | 1.08 | 0.70 | 0.81 | 1.15 | 8584 | 1097 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 7o3D | 12704 | 2024-11-16 | 2021-04-01 | 3.71 | 4.15 | 3.79 | 4.0 | 0.003 | 0.77 | 0.0 | 0.05 | 13.17 | 0.01 | 2.146 | 6.21 | 0.00 | 4.2 | 95.8 | 0.0 | -0.61 | 0.76 | 0.72 | 1.16 | 3.9 | 0.003 | 0.53 | 0.0 | 0.04 | 15.44 | 0.00 | 2.337 | 5.86 | 0.94 | 4.6 | 95.4 | 0.0 | 0.29 | 0.45 | 0.76 | 0.73 | 1.09 | 11458 | 709 | 1 | 0 | 0 | 0 | 5694 | logfile |
✔ | 7EJ7 | 31154 | 2024-11-15 | 2021-04-01 | 3.41 | 3.67 | — | 3.5 | 0.006 | 0.91 | 0.0 | 0.04 | 18.10 | 0.00 | 1.860 | 43.57 | 1.75 | 10.8 | 88.2 | 1.0 | -4.75 | 0.57 | 0.87 | 3.13 | 3.5 | 0.005 | 0.69 | 0.0 | 0.05 | 18.67 | 0.00 | 1.985 | 9.35 | 2.51 | 9.8 | 89.7 | 0.5 | -0.87 | 1.16 | 0.54 | 0.87 | 2.70 | 7773 | 948 | 8 | 18 | 6 | 0 | 0 | logfile |
✔ | 7MBX | 23749 | 2024-11-15 | 2021-04-01 | 1.95 | 2.56 | 1.94 | 2.4 | 0.005 | 0.88 | 1.0 | 0.06 | 12.16 | 0.01 | 2.287 | 2.16 | 0.45 | 1.5 | 98.5 | 0.0 | -0.11 | 0.72 | 0.86 | 4.55 | 2.3 | 0.003 | 0.61 | 0.0 | 0.04 | 15.12 | 0.00 | 2.476 | 4.87 | 1.12 | 0.9 | 99.1 | 0.0 | 1.91 | 0.50 | 0.71 | 0.88 | 4.65 | 8433 | 1065 | 13 | 0 | 2 | 61 | 0 | logfile |
✔ | 7EJ0 | 31147 | 2024-11-15 | 2021-04-01 | 3.2 | 3.48 | — | 4.0 | 0.009 | 1.12 | 7.0 | 0.08 | 13.82 | 0.01 | 1.736 | 21.36 | 0.43 | 6.5 | 93.5 | 0.0 | -0.98 | 0.57 | 0.80 | 2.10 | 4.0 | 0.003 | 0.73 | 0.0 | 0.04 | 16.57 | 0.00 | 2.507 | 10.88 | 2.99 | 6.0 | 94.0 | 0.0 | -0.70 | 0.59 | 0.57 | 0.82 | 2.04 | 8600 | 1099 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 7o24 | 12698 | 2024-11-15 | 2021-03-30 | 4.8 | 4.54 | 4.80 | 4.4 | 0.003 | 0.62 | 0.0 | 0.04 | 17.35 | 0.00 | 2.084 | 14.17 | 1.38 | 3.2 | 96.6 | 0.2 | 0.00 | 0.76 | 0.80 | — | 4.4 | 0.003 | 0.61 | 0.0 | 0.04 | 16.86 | 0.00 | 2.395 | 9.71 | 0.11 | 3.7 | 96.1 | 0.2 | 0.05 | 0.98 | 0.76 | 0.80 | — | 9318 | 1090 | 5 | 46 | 0 | 0 | 0 | logfile |
✔ | 7M99 | 23720 | 2024-11-18 | 2021-03-30 | 3.2 | 2.95 | 3.12 | 3.2 | 0.014 | 1.53 | 0.0 | 0.10 | 17.06 | 0.01 | 1.823 | 7.28 | 0.45 | 1.8 | 98.2 | 0.0 | -0.49 | 0.52 | 0.69 | 1.97 | 3.1 | 0.006 | 0.71 | 0.0 | 0.05 | 19.28 | 0.01 | 1.856 | 6.12 | 1.90 | 3.7 | 96.3 | 0.0 | 1.35 | 2.04 | 0.59 | 0.83 | 2.04 | 17613 | 2056 | 17 | 42 | 14 | 0 | 0 | logfile |
✔ | 7M8L | 23719 | 2024-11-19 | 2021-03-30 | 3.9 | 3.46 | — | 3.4 | 0.021 | 1.84 | 3.0 | 0.12 | 12.53 | 0.01 | 2.378 | 1.84 | 0.15 | 1.7 | 97.7 | 0.7 | 0.75 | 0.83 | 0.83 | 3.62 | 3.3 | 0.004 | 0.92 | 1.0 | 0.05 | 15.12 | 0.01 | 2.188 | 9.65 | 3.05 | 3.6 | 96.2 | 0.2 | -0.62 | 1.67 | 0.82 | 0.79 | 2.86 | 18753 | 2349 | 30 | 0 | 42 | 0 | 0 | logfile |
✔ | 7EiB | 31145 | 2024-11-14 | 2021-03-30 | 3.0 | 2.24 | — | 2.0 | 0.005 | 0.86 | 0.0 | 0.05 | 12.65 | 0.01 | 2.306 | 3.38 | 0.27 | 2.0 | 98.0 | 0.0 | -0.34 | 0.74 | 0.75 | 3.17 | 2.0 | 0.004 | 0.68 | 0.0 | 0.04 | 16.00 | 0.01 | 2.475 | 8.09 | 1.88 | 2.2 | 97.8 | 0.0 | 0.99 | 1.20 | 0.75 | 0.78 | 2.06 | 7204 | 928 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7M8J | 23717 | 2024-11-14 | 2021-03-29 | 3.48 | 3.83 | 3.41 | 3.7 | 0.006 | 0.96 | 0.0 | 0.05 | 14.72 | 0.00 | 1.837 | 12.31 | 0.00 | 6.8 | 93.2 | 0.0 | -0.32 | 0.69 | 0.80 | 2.61 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 15.09 | 0.00 | 2.333 | 4.92 | 1.29 | 5.9 | 94.1 | 0.0 | -0.55 | 0.44 | 0.69 | 0.81 | 2.81 | 6915 | 453 | 3 | 0 | 0 | 0 | 3398 | logfile |
✔ | 7M7E | 23710 | 2024-11-18 | 2021-03-28 | 3.2 | 3.78 | — | 3.7 | 0.006 | 1.09 | 12.0 | 0.06 | 16.73 | 0.01 | 2.151 | 8.15 | 9.50 | 3.9 | 96.1 | 0.0 | -1.47 | 0.69 | 0.72 | 1.63 | 3.7 | 0.003 | 0.57 | 0.0 | 0.04 | 15.03 | 0.00 | 2.540 | 4.82 | 1.91 | 3.5 | 96.5 | 0.0 | 0.10 | 0.69 | 0.74 | 0.80 | 2.03 | 16677 | 2230 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7o0Z | 12684 | 2024-11-15 | 2021-03-28 | 3.7 | 4.56 | — | 4.1 | 0.007 | 1.08 | 0.0 | 0.06 | 15.07 | 0.01 | 2.319 | 5.56 | 0.44 | 6.4 | 93.6 | 0.0 | -5.96 | 0.74 | 0.79 | 1.62 | 4.1 | 0.004 | 0.78 | 0.0 | 0.04 | 15.93 | 0.00 | 2.500 | 11.63 | 3.43 | 6.1 | 93.9 | 0.0 | -0.05 | 1.18 | 0.74 | 0.81 | 1.14 | 8730 | 1142 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7o17 | 12692 | 2024-11-16 | 2021-03-28 | 4.5 | 4.66 | — | 4.2 | 0.007 | 1.22 | 0.0 | 0.07 | 16.81 | 0.01 | 2.089 | 10.97 | 1.09 | 9.8 | 90.2 | 0.0 | -5.33 | 0.78 | 0.83 | — | 4.2 | 0.003 | 0.75 | 0.0 | 0.04 | 14.54 | 0.00 | 1.892 | 17.08 | 0.00 | 7.2 | 92.8 | 0.0 | -2.08 | 0.57 | 0.78 | 0.83 | — | 11679 | 1531 | 7 | 0 | 4 | 0 | 0 | logfile |
✔ | 7o10 | 12685 | 2024-11-16 | 2021-03-28 | 3.6 | 4.08 | — | 3.8 | 0.006 | 1.09 | 2.0 | 0.06 | 14.56 | 0.01 | 1.946 | 4.80 | 1.06 | 7.0 | 93.0 | 0.0 | -5.64 | 0.78 | 0.82 | 1.71 | 3.8 | 0.003 | 0.68 | 0.0 | 0.04 | 15.82 | 0.00 | 2.017 | 9.65 | 1.96 | 5.2 | 94.8 | 0.0 | -0.31 | 1.16 | 0.78 | 0.82 | 1.16 | 11651 | 1514 | 6 | 0 | 1 | 1 | 0 | logfile |
✔ | 7o11 | 12686 | 2024-11-16 | 2021-03-28 | 3.7 | 4.17 | — | 3.8 | 0.006 | 1.11 | 1.0 | 0.06 | 14.72 | 0.01 | 1.960 | 5.69 | 0.74 | 6.1 | 93.9 | 0.0 | -5.78 | 0.79 | 0.82 | 1.84 | 3.8 | 0.004 | 0.72 | 0.0 | 0.04 | 15.87 | 0.00 | 1.967 | 9.52 | 2.29 | 6.3 | 93.7 | 0.0 | -0.60 | 0.55 | 0.80 | 0.83 | 1.48 | 11651 | 1514 | 6 | 0 | 1 | 1 | 0 | logfile |
✔ | 7o0Y | 12683 | 2024-11-16 | 2021-03-28 | 3.3 | 3.83 | — | 3.5 | 0.006 | 1.04 | 1.0 | 0.06 | 14.35 | 0.01 | 1.857 | 4.59 | 0.41 | 6.1 | 93.9 | 0.0 | -5.81 | 0.76 | 0.84 | 2.66 | 3.5 | 0.003 | 0.63 | 0.0 | 0.04 | 15.45 | 0.00 | 1.972 | 7.86 | 0.90 | 5.1 | 94.9 | 0.0 | -0.51 | 1.52 | 0.77 | 0.85 | 1.70 | 11651 | 1514 | 6 | 0 | 1 | 1 | 0 | logfile |
✔ | 7o12 | 12687 | 2024-11-16 | 2021-03-28 | 3.7 | 4.45 | — | 3.9 | 0.012 | 1.29 | 0.0 | 0.07 | 15.58 | 0.01 | 1.734 | 8.32 | 0.82 | 5.6 | 94.4 | 0.0 | -5.32 | 0.82 | 0.84 | 1.75 | 3.9 | 0.003 | 0.65 | 0.0 | 0.04 | 15.53 | 0.00 | 1.935 | 11.58 | 2.46 | 5.6 | 94.4 | 0.0 | -0.13 | 1.53 | 0.82 | 0.85 | 1.04 | 11691 | 1511 | 8 | 0 | 5 | 1 | 0 | logfile |