Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7o0Z	12684	2024-11-15	2021-03-28	3.7	4.56	—	4.1	0.007	1.08	0.0	0.06	15.07	0.01	2.319	5.56	0.44	6.4	93.6	0.0	-5.96	0.74	0.79	1.62	4.1	0.004	0.78	0.0	0.04	15.93	0.00	2.500	11.63	3.43	6.1	93.9	0.0	-0.05	1.18	0.74	0.81	1.14	8730	1142	4	0	0	0	0	logfile
✔	7M7B	23709	2024-11-14	2021-03-27	2.95	3.73	2.93	3.1	0.012	1.87	5.0	0.11	13.02	0.02	2.512	0.10	0.00	3.5	96.5	0.0	-0.73	0.62	0.86	4.80	3.1	0.004	0.67	0.0	0.05	14.06	0.00	2.559	4.67	0.37	2.9	97.1	0.0	0.27	1.32	0.64	0.89	3.85	4898	635	4	0	2	0	0	logfile
✔	7M6S	23706	2024-11-17	2021-03-26	3.61	4.62	3.61	3.9	0.008	1.49	0.0	0.09	12.30	0.01	2.056	6.38	0.00	3.1	96.9	0.0	1.92	0.87	0.78	1.08	3.9	0.003	0.84	0.0	0.05	14.82	0.00	2.507	13.00	1.30	2.6	97.4	0.0	0.44	1.42	0.89	0.83	0.93	14625	1790	14	0	5	0	0	logfile
✔	7M6M	23700	2024-11-17	2021-03-26	3.09	2.99	3.00	3.2	0.008	1.31	0.0	0.08	11.55	0.01	2.383	3.69	0.00	3.7	96.3	0.0	0.33	0.80	0.82	2.77	3.3	0.004	0.76	0.0	0.05	15.43	0.00	2.501	9.45	2.33	2.8	97.2	0.0	0.59	0.72	0.82	0.84	2.39	14190	1720	15	0	15	0	0	logfile
✔	7M6P	23703	2024-11-17	2021-03-26	3.28	3.97	3.27	3.8	0.008	1.27	5.0	0.08	12.69	0.01	2.293	5.19	0.00	3.1	96.9	0.0	0.26	0.78	0.79	1.77	3.8	0.003	0.81	0.0	0.05	14.78	0.00	2.431	9.49	2.24	4.0	96.0	0.0	0.41	2.32	0.77	0.82	1.25	14650	1800	14	0	5	0	0	logfile
✔	7M74	23708	2024-11-17	2021-03-26	3.93	4.17	—	3.1	0.004	0.74	0.0	0.05	9.73	0.01	1.330	3.92	0.00	3.0	97.0	0.0	-3.25	0.91	0.78	1.54	3.1	0.002	0.68	0.0	0.04	12.89	0.00	2.498	9.36	0.96	3.0	97.0	0.0	-0.20	1.32	0.92	0.83	1.87	13457	1699	10	0	6	0	0	logfile
✔	7M6R	23705	2024-11-17	2021-03-26	3.57	3.53	3.53	3.8	0.008	1.20	0.0	0.08	12.25	0.01	2.333	4.44	0.64	3.5	96.5	0.0	-0.05	0.81	0.80	2.23	3.8	0.003	0.85	0.0	0.05	15.32	0.00	2.413	9.16	2.55	4.7	95.3	0.0	0.22	1.40	0.81	0.81	1.97	14300	1755	14	0	5	0	0	logfile
✔	7M6o	23702	2024-11-17	2021-03-26	2.84	3.65	2.87	3.4	0.009	1.38	0.0	0.09	12.01	0.01	2.041	5.25	0.00	2.8	97.2	0.0	-0.30	0.83	0.83	3.89	3.4	0.003	0.68	0.0	0.04	15.00	0.00	2.585	7.60	1.94	2.4	97.6	0.0	0.47	1.01	0.81	0.85	3.97	14670	1790	14	0	10	0	0	logfile
✔	7M6N	23701	2024-11-17	2021-03-26	2.61	3.47	2.67	3.2	0.009	1.28	0.0	0.08	11.87	0.01	2.228	4.91	0.31	1.7	98.3	0.0	0.23	0.86	0.85	3.28	3.2	0.003	0.66	0.0	0.04	14.53	0.00	2.512	7.73	1.50	1.0	99.0	0.0	0.88	0.63	0.83	0.84	3.00	14700	1810	15	0	5	0	0	logfile
✔	7M71	23707	2024-11-14	2021-03-26	2.66	3.67	2.73	3.0	0.013	1.86	5.0	0.11	12.98	0.02	2.531	0.08	0.41	5.0	95.0	0.0	-0.93	0.52	0.79	3.87	3.0	0.003	0.63	0.0	0.04	13.61	0.00	2.484	5.05	0.54	3.2	96.8	0.0	-0.33	1.33	0.59	0.90	3.85	6646	852	6	0	4	0	0	logfile
✔	7M6Q	23704	2024-11-18	2021-03-26	2.91	3.75	2.97	3.5	0.009	1.16	5.0	0.07	15.90	0.01	2.041	5.71	0.00	3.1	96.9	0.0	-0.39	0.82	0.82	2.70	3.5	0.004	0.69	0.0	0.04	17.20	0.00	2.478	7.24	2.01	3.3	96.7	0.0	0.64	0.54	0.81	0.83	3.35	14725	1800	14	0	10	0	0	logfile
✔	7M61	23686	2024-11-13	2021-03-25	3.8	3.83	—	4.1	0.005	1.02	0.0	0.08	12.79	0.00	2.218	22.02	0.00	14.3	85.7	0.0	-4.63	0.49	0.73	2.45	3.9	0.003	0.78	0.0	0.05	14.84	0.00	2.325	17.67	2.56	13.3	86.7	0.0	-4.99	1.30	0.49	0.74	2.52	1690	230	20	0	10	0	0	logfile
✔	7M65	23689	2024-11-13	2021-03-25	4.1	4.11	—	4.3	0.009	1.40	0.0	0.10	12.05	0.00	2.392	33.63	0.00	17.6	82.4	0.0	-6.09	0.52	0.73	—	4.2	0.004	0.87	0.0	0.04	11.93	0.00	2.278	16.31	0.00	16.5	83.5	0.0	-6.04	4.40	0.51	0.72	—	2025	275	15	0	5	0	0	logfile
✔	7M62	23687	2024-11-13	2021-03-25	3.9	3.91	—	4.3	0.007	1.13	0.0	0.07	14.83	0.00	2.321	32.83	0.00	23.3	76.7	0.0	-4.97	0.55	0.62	2.27	4.3	0.004	0.95	0.0	0.05	16.62	0.00	2.516	20.73	4.81	18.0	82.0	0.0	-4.46	2.06	0.57	0.66	2.93	2380	320	20	0	10	0	0	logfile
✔	7M64	23688	2024-11-13	2021-03-25	4.0	4.02	—	4.3	0.008	1.15	0.0	0.07	10.07	0.00	2.451	19.77	0.00	8.7	91.3	0.0	-3.84	0.52	0.75	—	4.3	0.004	0.92	0.0	0.04	12.06	0.00	2.436	6.78	0.95	4.3	95.7	0.0	-3.82	1.15	0.51	0.74	—	1850	250	20	0	10	0	0	logfile
✔	7M5o	23678	2024-11-16	2021-03-24	3.54	2.81	3.58	3.6	0.003	0.54	0.0	0.04	18.45	0.00	1.978	10.65	1.25	0.2	99.8	0.0	-2.03	0.79	0.75	1.08	3.7	0.005	0.65	0.0	0.04	19.76	0.01	2.323	11.50	3.56	6.6	93.4	0.0	-0.26	0.53	0.80	0.77	1.48	11648	655	3	37	1	0	5635	logfile
✔	7EGK	31135	2024-11-15	2021-03-24	2.7	2.79	2.60	2.7	0.008	0.97	0.0	0.05	14.76	0.01	2.240	2.92	8.02	3.2	96.5	0.2	-5.67	0.74	0.87	3.24	2.7	0.003	0.69	0.0	0.04	16.53	0.00	2.489	5.25	1.55	2.9	97.1	0.0	1.83	0.55	0.74	0.88	2.11	9894	1317	12	0	6	0	0	logfile
✔	7EG6	31106	2024-11-16	2021-03-24	3.1	3.55	—	3.2	0.007	0.73	0.0	0.04	27.43	0.01	2.328	1.56	0.00	0.9	99.1	0.0	-1.78	0.88	0.86	3.75	3.2	0.004	0.56	0.0	0.03	27.86	0.00	2.508	5.65	0.31	1.6	98.4	0.0	3.28	0.43	0.89	0.89	2.54	12118	779	11	292	0	0	0	logfile
✔	7EGM	31136	2024-11-19	2021-03-24	3.6	3.90	—	3.7	0.005	0.81	0.0	0.05	15.46	0.01	1.440	6.88	8.61	6.3	93.4	0.3	-3.86	0.81	0.81	1.89	3.7	0.003	0.62	0.0	0.04	16.11	0.00	2.448	5.93	2.25	5.7	94.3	0.0	0.58	0.69	0.81	0.81	1.34	19819	2431	8	0	0	0	0	logfile
✔	7EGH	31117	2024-11-20	2021-03-24	3.04	3.28	—	3.2	0.009	1.21	16.0	0.09	18.68	0.01	2.206	8.25	5.07	4.3	95.6	0.1	-2.18	0.67	0.63	3.18	3.2	0.005	0.80	2.0	0.04	18.96	0.01	2.119	8.80	3.54	3.8	96.2	0.0	0.54	0.62	0.81	0.86	2.97	20543	2336	8	90	0	0	0	logfile

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