Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZYQ	60576	2024-11-14	2024-06-18	3.18	3.41	3.17	3.4	0.005	0.59	0.0	0.04	16.95	0.00	2.234	6.78	0.46	2.8	97.2	0.0	1.48	0.57	0.85	2.58	3.4	0.003	0.54	0.0	0.04	16.19	0.00	2.535	5.53	2.28	2.7	97.3	0.0	1.80	0.36	0.55	0.83	2.58	6329	796	5	0	1	0	0	logfile
✔	8ZYo	60574	2024-11-14	2024-06-18	3.29	3.53	3.28	3.5	0.005	0.68	0.0	0.04	17.02	0.00	2.227	8.41	0.46	2.6	97.4	0.0	1.70	0.56	0.85	1.85	3.5	0.004	0.58	0.0	0.04	16.49	0.00	2.540	6.82	4.18	3.1	96.9	0.0	1.94	0.31	0.58	0.85	1.94	6238	785	5	0	1	0	0	logfile
✔	9CA0	45378	2024-11-14	2024-06-16	3.48	2.47	3.49	2.2	0.004	0.58	0.0	0.04	14.95	0.01	2.104	6.67	0.15	4.2	95.8	0.0	-0.73	0.77	0.78	2.35	2.2	0.004	0.57	0.0	0.04	17.36	0.00	2.492	6.35	2.25	3.9	96.1	0.0	-0.52	0.35	0.79	0.82	1.63	6265	773	5	10	1	0	0	logfile
✔	9C9Y	45376	2024-11-14	2024-06-16	3.35	2.51	3.35	2.2	0.005	0.66	0.0	0.04	16.02	0.01	2.041	6.79	0.15	6.0	93.9	0.1	-0.01	0.77	0.79	2.18	2.2	0.004	0.65	0.0	0.04	18.29	0.00	2.062	4.93	2.54	4.7	95.3	0.0	0.16	0.39	0.78	0.82	1.64	6225	773	4	8	2	0	0	logfile
✔	9CA1	45379	2024-11-14	2024-06-16	3.26	2.47	3.27	2.2	0.004	0.59	0.0	0.04	15.56	0.01	2.120	5.31	0.00	4.2	95.7	0.1	0.28	0.77	0.80	2.18	2.2	0.003	0.59	0.0	0.04	17.49	0.00	2.111	5.23	3.60	3.7	96.3	0.0	0.26	0.31	0.79	0.83	1.90	6265	773	5	10	2	0	0	logfile
✔	8ZXP	60548	2024-11-16	2024-06-14	3.09	3.32	3.14	3.5	0.005	0.98	0.0	0.05	16.93	0.01	2.297	4.76	0.41	5.2	94.8	0.0	-1.54	0.59	0.80	2.09	3.5	0.003	0.58	0.0	0.04	16.95	0.00	2.610	8.23	3.36	3.7	96.3	0.0	2.02	0.33	0.59	0.80	1.90	11586	1482	6	0	3	0	0	logfile
✔	8ZXK	60542	2024-11-16	2024-06-14	2.76	2.94	2.77	3.0	0.003	0.54	0.0	0.04	16.40	0.00	2.171	8.86	0.16	4.7	95.3	0.0	2.48	0.72	0.81	2.31	3.0	0.003	0.59	0.0	0.04	16.88	0.00	2.473	8.78	3.42	4.6	95.4	0.0	2.47	0.21	0.61	0.81	2.32	11653	1490	6	0	3	0	0	logfile
✔	8ZWi	60528	2024-11-14	2024-06-13	3.0	2.75	2.12	3.2	0.011	0.86	0.0	0.06	11.26	0.00	2.261	8.83	0.00	6.8	93.2	0.0	-3.70	0.44	0.86	5.14	3.2	0.007	1.49	0.0	0.05	15.95	0.00	2.176	5.95	2.71	3.7	96.3	0.0	-2.07	0.90	0.43	0.87	5.55	2526	366	6	0	0	0	0	logfile
✔	8ZWJ	60529	2024-11-14	2024-06-13	3.1	2.80	2.17	3.2	0.006	0.74	0.0	0.05	15.84	0.00	2.218	14.51	0.00	10.1	89.9	0.0	-4.10	0.44	0.86	4.88	3.2	0.003	0.52	0.0	0.05	15.38	0.00	2.601	3.22	2.59	8.2	91.8	0.0	-2.28	1.29	0.42	0.86	4.51	2760	378	8	6	0	0	0	logfile
✔	8ZWK	60530	2024-11-14	2024-06-13	3.4	2.76	2.79	3.4	0.003	0.60	0.0	0.05	16.32	0.00	2.253	13.62	0.00	8.2	91.8	0.0	-5.39	0.34	0.79	3.91	3.4	0.003	0.64	0.0	0.05	17.16	0.00	2.592	6.27	7.41	8.7	91.3	0.0	-3.78	1.51	0.37	0.82	4.05	2760	378	8	6	0	0	0	logfile
✔	8ZWL	60532	2024-11-14	2024-06-13	3.4	3.16	3.10	3.5	0.008	0.92	0.0	0.06	11.35	0.00	2.273	8.06	0.00	5.4	94.6	0.0	-4.31	0.30	0.81	4.89	3.4	0.006	0.75	0.0	0.05	13.97	0.00	2.607	5.80	2.53	6.3	93.7	0.0	-3.25	0.57	0.33	0.85	4.75	3468	456	6	0	0	0	0	logfile
✔	8ZX6	60539	2024-11-14	2024-06-13	3.5	3.02	2.57	3.5	0.004	0.77	0.0	0.05	12.49	0.00	2.338	7.64	0.00	2.5	97.5	0.0	-4.38	0.32	0.81	5.08	3.5	0.005	0.72	0.0	0.05	13.99	0.00	2.640	5.23	1.52	9.2	90.8	0.0	-3.33	0.71	0.35	0.83	4.87	3468	456	6	0	0	0	0	logfile
✔	8ZWH	60527	2024-11-13	2024-06-13	2.5	3.26	—	3.0	0.011	0.91	0.0	0.06	9.45	0.00	2.284	18.21	0.00	3.8	96.2	0.0	-4.12	0.42	0.85	2.37	3.0	0.002	0.54	0.0	0.05	11.67	0.00	2.575	6.43	0.88	5.0	95.0	0.0	-3.11	1.18	0.43	0.84	3.55	2268	330	6	0	0	0	0	logfile
✔	8ZWM	60533	2024-11-14	2024-06-13	3.2	3.28	2.96	3.3	0.005	0.67	0.0	0.05	11.92	0.00	2.167	4.43	0.00	2.3	97.7	0.0	-3.69	0.35	0.90	6.45	3.3	0.004	0.58	0.0	0.05	14.40	0.00	2.606	3.43	1.02	2.5	97.5	0.0	-2.56	1.26	0.33	0.91	6.49	3435	453	6	0	0	0	0	logfile
✔	8ZX1	60536	2024-11-15	2024-06-13	3.5	2.57	3.56	2.3	0.007	1.12	2.0	0.06	13.96	0.01	1.921	17.54	1.01	3.5	96.5	0.0	-0.25	0.61	0.61	0.90	2.3	0.004	0.98	1.0	0.05	16.90	0.00	2.104	9.42	2.86	2.8	97.2	0.0	0.30	0.69	0.71	0.69	0.95	9846	1240	4	0	0	0	0	logfile
✔	9FoR	50628	2024-11-14	2024-06-12	2.75	2.54	2.63	2.8	0.012	2.11	5.0	0.10	12.86	0.01	2.496	1.38	3.17	7.4	91.5	1.1	-5.01	0.49	0.92	7.55	2.7	0.003	0.86	0.0	0.04	15.96	0.00	2.632	1.08	1.59	6.4	93.6	0.0	-5.31	0.37	0.53	0.91	6.33	3405	490	10	0	0	0	0	logfile
✔	9C8R	45308	2024-11-16	2024-06-12	2.83	3.00	2.86	3.0	0.003	0.55	0.0	0.04	15.12	0.00	2.220	3.55	0.95	2.4	97.6	0.0	-0.07	0.70	0.90	4.57	3.0	0.003	0.75	0.0	0.04	15.51	0.00	1.653	2.71	1.26	2.0	98.0	0.0	0.19	0.23	0.73	0.91	4.23	12220	1544	3	0	0	0	0	logfile
✔	8ZW8	60519	2024-11-16	2024-06-12	3.05	3.27	3.06	3.3	0.003	0.60	0.0	0.04	16.41	0.00	2.140	9.12	0.65	3.8	96.2	0.0	1.59	0.63	0.82	1.79	3.3	0.003	0.56	0.0	0.04	16.57	0.00	2.535	6.26	3.50	4.0	96.0	0.0	1.80	0.25	0.61	0.81	2.38	11652	1491	3	0	0	0	0	logfile
✔	9C7U	45294	2024-11-14	2024-06-11	3.65	4.10	3.63	4.0	0.003	0.61	0.0	0.04	16.99	0.00	2.138	11.43	0.29	9.2	90.8	0.0	-0.72	0.71	0.83	2.04	4.0	0.004	0.64	0.0	0.04	17.45	0.00	2.539	10.31	5.23	9.3	90.7	0.0	-0.45	0.30	0.69	0.83	1.95	6848	896	4	0	1	0	0	logfile
✔	9FoF	50621	2024-11-14	2024-06-11	2.9	2.55	2.80	3.2	0.011	1.53	6.0	0.08	13.93	0.01	2.332	9.79	1.56	4.2	94.8	1.0	-4.04	0.27	0.57	3.42	2.8	0.006	1.03	0.0	0.05	17.52	0.00	2.580	2.89	2.60	7.6	92.4	0.0	-4.73	1.98	0.51	0.90	5.61	4176	600	12	0	0	0	0	logfile

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