Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9C6Q	45254	2024-11-15	2024-06-08	3.18	3.22	3.07	3.3	0.005	0.64	0.0	0.04	15.43	0.00	2.139	5.91	0.19	6.6	93.4	0.1	-0.07	0.59	0.70	0.92	3.3	0.004	0.65	0.0	0.04	17.24	0.00	2.523	3.08	1.61	7.6	92.4	0.0	-0.02	0.66	0.67	0.81	2.22	9841	1190	2	12	0	0	0	logfile
✔	8ZTR	60470	2024-11-17	2024-06-07	3.26	3.32	3.25	3.3	0.005	0.81	1.0	0.04	17.60	0.00	2.195	7.58	0.45	4.8	95.2	0.1	-0.75	0.61	0.59	1.19	3.3	0.003	0.67	0.0	0.04	18.51	0.00	2.467	11.00	3.49	4.5	95.5	0.0	-0.34	1.13	0.62	0.61	0.73	14072	1694	4	0	0	0	0	logfile
✔	9FMV	50571	2024-11-16	2024-06-07	3.43	2.30	3.33	2.1	0.004	0.65	0.0	0.04	15.23	0.01	2.203	9.66	0.55	3.2	96.8	0.0	1.60	0.75	0.72	1.40	2.1	0.003	0.63	0.0	0.04	16.09	0.00	2.491	7.15	1.94	2.8	97.2	0.0	2.00	0.37	0.75	0.73	1.69	10272	1254	5	0	0	0	0	logfile
✔	9C5Q	45218	2024-11-17	2024-06-06	3.1	3.69	3.23	3.5	0.002	0.57	0.0	0.04	19.49	0.00	2.031	7.40	0.65	8.4	91.5	0.1	-2.00	0.76	0.81	1.49	3.5	0.003	0.61	0.0	0.04	19.61	0.00	2.521	5.60	4.28	10.1	89.8	0.1	-1.22	0.39	0.72	0.77	1.62	12324	1550	4	28	0	0	0	logfile
✔	8ZSZ	60435	2024-11-14	2024-06-06	3.59	3.78	3.47	3.7	0.017	1.81	9.0	0.09	14.91	0.01	1.624	28.95	2.63	2.4	97.6	0.0	-0.01	0.59	0.75	1.47	3.8	0.003	0.68	0.0	0.04	16.54	0.00	1.956	14.47	2.42	3.1	96.9	0.0	1.63	0.74	0.59	0.75	1.20	4754	630	4	0	8	0	0	logfile
✔	9FLX	50542	2024-11-19	2024-06-05	3.6	3.79	3.59	3.8	0.017	1.52	14.0	0.08	9.30	0.01	2.030	6.30	0.00	2.0	98.0	0.0	0.42	0.59	0.65	3.51	3.7	0.003	0.61	0.0	0.04	13.06	0.00	2.473	4.73	1.56	1.8	98.2	0.0	0.20	0.67	0.76	0.86	3.45	17675	2436	7	0	0	0	0	logfile
✔	8ZSJ	60417	2024-11-15	2024-06-05	2.8	3.25	2.87	3.1	0.005	0.68	0.0	0.05	12.91	0.01	2.216	8.42	0.12	3.4	96.6	0.0	0.88	0.70	0.84	3.96	3.2	0.004	0.61	0.0	0.04	15.64	0.00	2.485	7.05	1.27	2.7	97.3	0.0	1.02	1.00	0.62	0.85	3.38	8118	1035	6	0	1	4	0	logfile
✔	9FLU	50539	2024-11-18	2024-06-05	3.4	3.67	3.38	3.6	0.018	1.52	0.0	0.08	8.06	0.02	2.030	3.67	0.00	1.2	98.8	0.0	1.79	0.76	0.82	3.85	3.6	0.003	0.54	0.0	0.05	10.95	0.00	2.345	4.63	3.34	1.5	98.5	0.0	1.74	1.21	0.70	0.84	3.78	16520	2324	7	0	0	0	0	logfile
✔	9FLS	50538	2024-11-18	2024-06-05	3.4	3.63	3.40	3.6	0.018	1.59	7.0	0.08	9.43	0.01	2.021	6.79	0.00	4.2	95.8	0.0	0.44	0.49	0.63	3.84	3.6	0.005	0.65	0.0	0.05	11.81	0.00	2.283	4.37	2.76	2.7	97.3	0.0	0.24	1.61	0.72	0.86	4.10	16604	2359	7	0	0	0	0	logfile
✔	8ZRT	60404	2024-11-13	2024-06-05	3.62	3.79	3.44	3.8	0.003	0.69	0.0	0.04	16.25	0.01	2.227	13.78	0.81	3.1	96.9	0.0	0.00	0.47	0.72	1.94	3.8	0.003	0.72	0.0	0.04	16.69	0.01	2.580	12.92	8.06	4.1	95.9	0.0	1.10	0.32	0.47	0.72	1.79	2322	303	2	0	0	0	0	logfile
✔	8ZSP	60423	2024-11-15	2024-06-05	3.14	2.39	3.22	3.2	0.008	0.72	0.0	0.05	14.31	0.00	2.247	9.97	0.12	3.2	96.8	0.0	0.24	0.75	0.75	2.72	2.2	0.005	0.66	0.0	0.05	16.29	0.00	2.530	9.85	1.62	3.1	96.9	0.0	0.59	1.21	0.76	0.80	2.42	8076	1033	6	0	1	0	0	logfile
✔	8ZSB	60410	2024-11-14	2024-06-05	3.26	3.46	3.10	3.5	0.012	1.18	6.0	0.07	14.72	0.01	1.897	11.27	2.28	3.0	97.0	0.0	1.10	0.58	0.78	2.25	3.5	0.003	0.56	0.0	0.04	16.03	0.00	1.877	9.41	0.95	3.3	96.7	0.0	2.63	0.51	0.60	0.82	1.93	4798	614	4	0	2	0	0	logfile
✔	9FLV	50540	2024-11-20	2024-06-05	3.6	3.82	3.60	3.8	0.018	1.89	14.0	0.09	8.99	0.01	1.202	7.43	0.00	1.0	99.0	0.0	1.29	0.76	0.83	2.82	3.8	0.003	0.57	0.0	0.04	12.57	0.00	2.507	4.48	2.54	1.1	98.9	0.0	0.74	0.65	0.77	0.84	2.99	20818	2905	7	0	0	0	0	logfile
✔	9C4C	45181	2024-11-16	2024-06-04	3.09	3.22	3.10	3.2	0.004	0.71	0.0	0.04	22.35	0.00	1.733	4.00	0.00	0.7	99.3	0.0	-1.20	0.68	0.74	2.96	3.2	0.004	0.59	0.0	0.04	23.02	0.00	1.995	2.26	1.21	1.9	98.1	0.0	1.60	1.13	0.68	0.73	2.05	11490	542	10	77	8	0	5414	logfile
✔	9C4o	45192	2024-11-16	2024-06-04	1.99	2.17	2.04	2.2	0.004	0.65	0.0	0.04	16.53	0.00	2.208	5.77	0.18	1.7	98.3	0.0	-0.01	0.61	0.81	6.59	2.2	0.004	0.63	0.0	0.04	16.65	0.01	2.144	4.77	0.92	2.0	98.0	0.0	-0.02	0.86	0.61	0.81	6.74	10166	661	2	0	2	111	4883	logfile
✔	9C4D	45182	2024-11-17	2024-06-04	4.17	4.62	4.15	4.3	0.002	0.48	0.0	0.03	22.14	0.00	2.085	9.43	2.34	0.7	99.3	0.0	4.02	0.82	0.73	—	4.3	0.003	0.59	0.0	0.04	22.97	0.00	1.390	10.74	0.00	1.4	98.6	0.0	2.57	1.89	0.83	0.77	—	12493	1120	18	154	16	0	0	logfile
✔	9C4F	45184	2024-11-20	2024-06-04	3.2	2.33	3.05	2.3	0.005	0.82	0.0	0.05	13.07	0.01	1.661	9.81	0.30	2.5	97.4	0.1	-0.62	0.39	0.75	4.46	2.2	0.004	0.65	0.0	0.04	16.18	0.00	2.496	8.39	2.59	1.9	98.1	0.0	-0.44	0.66	0.38	0.80	3.88	21560	2774	6	0	0	0	0	logfile
✔	8ZRA	60394	2024-11-16	2024-06-04	3.32	3.61	3.30	3.7	0.006	0.77	0.0	0.05	15.35	0.01	2.251	16.83	0.00	10.4	89.6	0.0	-4.04	0.66	0.82	4.11	3.7	0.005	0.69	0.0	0.05	17.04	0.01	2.386	10.12	2.90	6.3	93.7	0.0	-2.33	0.56	0.68	0.85	4.34	11772	1422	18	0	0	0	0	logfile
✔	9C4B	45180	2024-11-14	2024-06-03	3.4	3.78	3.57	3.7	0.004	0.73	1.0	0.05	16.50	0.00	1.827	10.64	0.89	5.9	93.3	0.8	-0.46	0.62	0.72	1.52	3.7	0.003	0.55	0.0	0.04	16.89	0.00	2.314	7.04	2.07	7.0	92.8	0.3	-0.53	0.54	0.62	0.72	1.61	6110	393	1	0	0	0	3030	logfile
✔	8ZQE	60384	2024-11-15	2024-06-02	2.9	2.31	3.03	2.1	0.004	0.71	0.0	0.05	13.70	0.00	2.169	12.51	0.21	4.5	95.5	0.0	-0.15	0.74	0.75	2.45	2.2	0.003	0.69	0.0	0.04	17.17	0.00	2.407	10.84	2.64	3.9	96.1	0.0	0.08	1.34	0.77	0.80	2.25	8767	1131	6	0	0	0	0	logfile

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