Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9C3C	45165	2024-11-19	2024-05-31	4.3	4.51	4.30	4.4	0.004	0.71	0.0	0.05	15.49	0.00	2.212	10.13	0.00	3.7	96.3	0.0	-0.49	0.71	0.67	—	4.4	0.003	0.69	0.0	0.04	13.14	0.00	2.459	12.54	0.00	5.0	95.0	0.0	-0.58	0.81	0.63	0.52	—	19475	2458	19	0	25	0	0	logfile
✔	8ZPT	60354	2024-11-15	2024-05-31	2.96	2.53	2.83	3.0	0.002	0.45	0.0	0.04	10.05	0.00	1.974	6.41	0.20	2.2	97.8	0.0	1.57	0.57	0.73	2.45	2.9	0.004	0.67	0.0	0.04	15.43	0.00	2.516	6.36	3.13	3.6	96.4	0.0	0.60	1.79	0.60	0.79	2.77	9151	1162	7	0	1	0	0	logfile
✔	9FJU	50516	2024-11-18	2024-05-31	3.84	4.15	3.89	4.0	0.004	0.61	0.0	0.04	18.81	0.00	1.705	9.90	0.18	2.1	97.9	0.0	0.15	0.82	0.83	1.83	4.0	0.003	0.70	0.0	0.05	17.26	0.00	1.915	9.08	3.23	3.0	97.0	0.0	-0.03	0.43	0.83	0.83	1.61	15968	2010	22	0	24	0	0	logfile
✔	9C3E	45166	2024-11-16	2024-05-31	3.5	4.21	3.49	3.9	0.005	0.89	0.0	0.05	15.76	0.01	2.140	16.01	1.92	4.2	95.7	0.2	-0.18	0.74	0.79	2.36	3.9	0.006	0.78	0.0	0.05	16.18	0.00	2.461	12.01	5.12	5.2	94.8	0.1	0.13	0.55	0.75	0.81	2.11	10619	1356	15	0	13	0	0	logfile
✔	9FJo	50507	2024-11-16	2024-05-31	3.05	3.39	3.10	3.4	0.002	0.52	0.0	0.04	15.85	0.00	2.165	5.36	0.24	2.1	97.9	0.0	-0.37	0.68	0.84	2.73	3.4	0.003	0.59	0.0	0.04	16.66	0.00	2.444	5.62	2.37	2.9	97.1	0.0	0.50	0.29	0.68	0.84	2.35	11466	1452	8	0	8	0	0	logfile
✔	9FJY	50517	2024-11-18	2024-05-31	3.79	4.12	3.87	4.0	0.004	0.60	0.0	0.04	18.47	0.00	1.723	9.49	0.41	1.7	98.3	0.0	0.26	0.82	0.83	2.23	4.0	0.005	0.72	0.0	0.05	16.91	0.00	1.912	10.63	4.64	2.8	97.2	0.0	0.07	0.97	0.83	0.84	1.71	15968	2010	22	0	24	0	0	logfile
✔	8ZPS	60353	2024-11-15	2024-05-31	2.97	2.45	2.77	3.0	0.002	0.54	0.0	0.04	9.77	0.00	1.744	8.01	1.06	2.4	97.6	0.0	1.49	0.49	0.65	1.55	2.9	0.003	0.63	0.0	0.04	14.75	0.00	2.341	7.56	2.45	3.2	96.8	0.0	1.12	1.40	0.62	0.79	2.44	8848	1135	7	0	1	0	0	logfile
✔	9FJM	50506	2024-11-16	2024-05-31	3.65	3.91	3.68	3.9	0.002	0.57	0.0	0.04	16.75	0.00	1.766	8.19	0.24	1.5	98.5	0.0	-0.30	0.74	0.82	2.24	3.9	0.005	0.70	0.0	0.05	17.27	0.00	1.975	8.53	4.11	3.1	96.9	0.0	0.01	0.95	0.75	0.83	2.02	11772	1487	16	0	16	0	0	logfile
✔	9C2B	45153	2024-11-15	2024-05-30	2.42	2.65	2.43	2.7	0.007	0.98	0.0	0.06	18.26	0.01	2.161	3.71	0.00	2.1	97.9	0.0	0.27	0.67	0.85	4.42	2.7	0.003	0.55	0.0	0.04	16.77	0.00	1.939	2.89	2.42	1.2	98.8	0.0	1.41	0.34	0.69	0.87	3.66	8208	990	15	0	24	141	0	logfile
✔	9C2A	45152	2024-11-15	2024-05-30	2.74	2.08	2.74	1.9	0.008	0.94	0.0	0.06	12.74	0.01	2.025	6.15	0.00	2.6	97.4	0.0	-1.18	0.75	0.77	4.66	1.9	0.004	0.52	0.0	0.04	14.38	0.00	2.509	4.33	2.78	2.5	97.5	0.0	0.59	0.42	0.78	0.81	4.12	7833	933	12	0	21	102	0	logfile
✔	9C1U	45130	2024-11-13	2024-05-29	2.31	2.35	2.46	2.4	0.004	0.47	0.0	0.05	10.27	0.00	2.112	2.84	0.00	0.3	99.7	0.0	0.19	0.71	0.87	6.57	2.4	0.003	0.58	0.0	0.05	14.87	0.00	2.592	7.44	5.13	0.0	100.0	0.0	0.66	0.42	0.68	0.89	6.21	2376	312	12	0	0	0	0	logfile
✔	8ZPB	60331	2024-11-16	2024-05-29	2.6	2.83	2.61	2.9	0.005	0.56	0.0	0.04	15.80	0.00	1.921	6.01	1.08	1.7	98.3	0.0	0.89	0.61	0.80	4.62	2.9	0.003	0.51	0.0	0.04	15.62	0.00	2.029	3.85	1.79	1.7	98.3	0.0	1.48	1.34	0.59	0.79	4.83	10676	667	4	0	5	54	5257	logfile
✔	8ZoY	60322	2024-11-16	2024-05-29	2.5	2.76	2.53	2.8	0.007	0.65	0.0	0.04	15.32	0.01	1.956	6.93	1.07	2.0	98.0	0.0	0.87	0.62	0.81	4.94	2.8	0.003	0.52	0.0	0.04	15.15	0.00	2.394	3.94	0.71	2.4	97.6	0.0	1.74	0.42	0.61	0.81	4.38	10701	666	4	0	3	70	5260	logfile
✔	8ZNE	60269	2024-11-14	2024-05-26	2.64	2.76	2.44	2.7	0.005	0.78	0.0	0.05	16.82	0.01	2.472	6.22	2.65	3.1	96.9	0.0	0.47	0.53	0.87	4.39	2.7	0.007	0.66	0.0	0.05	17.93	0.01	2.444	4.86	2.06	3.6	96.4	0.0	0.68	1.31	0.50	0.90	4.59	3312	417	2	0	1	9	0	logfile
✔	8ZNB	60266	2024-11-14	2024-05-26	2.53	2.68	2.16	2.7	0.007	0.95	0.0	0.05	15.55	0.00	2.421	7.24	2.06	1.2	98.8	0.0	0.61	0.55	0.89	4.44	2.6	0.003	0.60	0.0	0.04	17.36	0.00	2.426	6.64	1.47	1.9	98.1	0.0	0.99	0.90	0.50	0.90	4.17	3342	416	2	0	1	21	0	logfile
✔	8ZND	60268	2024-11-14	2024-05-26	2.53	2.67	1.34	2.6	0.007	0.93	0.0	0.05	15.60	0.01	2.392	3.48	0.88	1.7	98.3	0.0	0.95	0.58	0.90	4.78	2.6	0.006	0.60	0.0	0.05	16.77	0.01	2.433	3.48	1.47	2.4	97.6	0.0	1.15	0.84	0.53	0.92	4.48	3334	416	2	0	1	24	0	logfile
✔	8ZNC	60267	2024-11-14	2024-05-26	2.41	2.55	1.33	2.5	0.007	0.97	0.0	0.05	19.34	0.01	2.408	6.47	1.76	2.4	97.6	0.0	0.66	0.53	0.90	3.96	2.5	0.004	0.60	0.0	0.05	19.13	0.00	2.439	5.12	1.76	1.9	98.1	0.0	0.99	0.95	0.50	0.91	3.93	3356	416	2	0	3	24	0	logfile
✔	8ZNG	60270	2024-11-14	2024-05-26	2.5	2.65	1.33	2.6	0.007	0.92	0.0	0.05	19.32	0.01	2.439	3.91	3.24	2.9	97.1	0.0	1.28	0.60	0.89	4.31	2.6	0.003	0.53	0.0	0.04	17.78	0.00	2.482	5.42	1.76	2.4	97.6	0.0	1.23	0.81	0.54	0.92	3.98	3347	416	2	0	2	16	0	logfile
✔	9C0C	45079	2024-11-20	2024-05-25	3.41	3.58	3.44	3.5	0.003	0.58	0.0	0.04	14.86	0.00	2.206	8.91	0.58	2.1	97.9	0.0	1.80	0.69	0.73	1.56	3.5	0.003	0.54	0.0	0.04	16.14	0.00	2.524	6.80	2.14	1.4	98.6	0.0	1.81	1.24	0.83	0.87	1.52	53970	7336	14	0	0	0	0	logfile
✔	9FGS	50420	2024-11-14	2024-05-25	4.0	4.27	4.01	4.2	0.003	0.66	0.0	0.04	13.38	0.00	2.251	10.57	0.00	8.7	91.3	0.0	-1.99	0.78	0.80	—	4.2	0.003	0.66	0.0	0.04	15.53	0.00	2.415	10.57	2.63	8.7	91.1	0.2	-1.64	0.97	0.78	0.81	—	3187	412	3	0	1	0	0	logfile

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