Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZMY	60262	2024-11-15	2024-05-24	2.9	2.88	2.74	3.0	0.010	0.91	0.0	0.05	15.08	0.00	2.203	20.23	0.00	4.2	95.8	0.0	-4.52	0.51	0.79	2.59	2.9	0.010	1.04	0.0	0.06	17.97	0.00	2.489	6.80	3.80	7.9	92.1	0.0	-2.98	2.47	0.59	0.91	4.11	8652	1176	19	0	27	0	0	logfile
✔	8ZMS	60255	2024-11-14	2024-05-23	3.7	3.97	3.83	4.0	0.007	1.15	0.0	0.05	9.68	0.01	2.349	3.51	0.00	5.0	95.0	0.0	-3.71	0.44	0.76	2.35	4.0	0.004	0.80	0.0	0.04	13.95	0.00	2.489	9.53	2.29	3.2	96.8	0.0	0.91	0.64	0.46	0.76	1.38	2920	386	2	0	1	0	0	logfile
✔	9BXR	45009	2024-11-14	2024-05-22	3.2	2.90	3.18	3.3	0.011	1.87	0.0	0.09	11.16	0.01	0.991	32.81	0.00	6.7	92.0	1.3	-2.61	0.36	0.73	3.45	3.1	0.003	0.65	0.0	0.05	14.97	0.00	2.401	2.79	1.49	7.8	92.2	0.0	-2.71	1.27	0.38	0.78	2.73	7184	462	6	0	0	0	3656	logfile
✔	9BXQ	45008	2024-11-14	2024-05-22	3.1	3.01	2.97	3.2	0.011	1.84	0.0	0.09	10.87	0.01	1.454	27.94	0.00	6.7	93.3	0.0	-2.37	0.30	0.68	3.66	3.1	0.003	0.59	0.0	0.05	13.20	0.00	2.502	3.35	0.00	5.3	94.7	0.0	-2.71	1.22	0.35	0.78	4.80	7182	462	6	0	0	0	3654	logfile
✔	9BXo	45007	2024-11-14	2024-05-22	3.0	2.93	2.88	3.0	0.011	1.74	0.0	0.09	12.75	0.01	2.020	23.59	0.00	4.7	95.3	0.0	-1.64	0.43	0.82	5.05	2.9	0.003	0.58	0.0	0.05	15.69	0.00	2.321	3.91	1.00	2.0	98.0	0.0	-2.14	0.87	0.48	0.87	4.67	7182	462	6	0	0	0	3654	logfile
✔	9BXi	45005	2024-11-14	2024-05-22	2.7	2.84	2.60	2.9	0.010	1.61	0.0	0.08	10.28	0.01	1.231	13.85	0.00	6.7	93.3	0.0	-1.83	0.46	0.86	5.10	2.9	0.005	1.20	0.0	0.05	16.19	0.00	2.484	3.07	0.75	6.9	93.1	0.0	-2.25	1.67	0.46	0.88	3.66	7182	462	6	0	0	0	3654	logfile
✔	9FFB	50353	2024-11-18	2024-05-22	3.59	4.32	3.49	3.6	0.013	0.95	0.0	0.06	20.15	0.01	2.015	13.43	0.16	6.4	93.5	0.0	-0.48	0.87	0.81	0.50	3.7	0.013	0.84	0.0	0.04	20.44	0.00	2.005	15.07	3.53	6.2	93.7	0.0	-0.19	0.38	0.87	0.83	0.48	17255	2066	4	42	0	0	0	logfile
✔	9BWT	44979	2024-11-16	2024-05-21	2.5	2.72	2.60	2.8	0.006	0.71	0.0	0.04	17.53	0.00	1.847	23.32	2.72	4.2	95.6	0.2	1.32	0.47	0.79	3.62	2.8	0.003	0.60	0.0	0.04	17.40	0.00	2.492	6.22	1.95	4.0	95.9	0.1	1.15	0.42	0.62	0.89	4.05	9955	1271	5	0	3	6	0	logfile
✔	8ZLP	60232	2024-11-14	2024-05-20	3.5	3.09	3.05	3.4	0.007	0.55	0.0	0.05	12.26	0.00	2.368	4.84	0.00	4.2	95.8	0.0	-4.52	0.48	0.91	4.59	3.4	0.004	0.54	0.0	0.05	15.00	0.00	2.607	3.31	4.66	3.1	96.9	0.0	-3.08	1.91	0.47	0.91	4.00	4116	588	6	0	6	0	0	logfile
✔	8ZLo	60231	2024-11-14	2024-05-20	3.1	2.98	2.81	3.3	0.015	1.52	0.0	0.08	17.15	0.01	2.063	28.08	0.00	9.4	90.6	0.0	-4.08	0.25	0.57	3.84	3.1	0.007	1.05	0.0	0.06	15.25	0.00	2.597	10.40	4.82	10.2	89.8	0.0	-4.11	1.95	0.51	0.88	2.55	4816	660	18	0	10	0	0	logfile
✔	9FEE	50339	2024-11-15	2024-05-19	3.03	3.26	3.12	3.3	0.004	0.58	0.0	0.05	15.80	0.00	2.225	4.99	0.20	7.5	92.5	0.0	-1.40	0.76	0.87	2.79	3.3	0.003	0.61	0.0	0.05	16.17	0.00	2.558	4.46	3.22	7.2	92.8	0.0	0.06	0.91	0.75	0.86	2.61	9112	1236	4	0	0	0	0	logfile
✔	9FEF	50340	2024-11-16	2024-05-19	2.98	3.19	3.00	3.2	0.008	0.83	1.0	0.05	16.73	0.01	2.173	6.86	0.58	5.7	94.0	0.3	0.09	0.74	0.86	2.49	3.2	0.003	0.64	0.0	0.04	16.75	0.00	2.565	5.01	2.65	6.1	93.9	0.0	0.61	0.93	0.65	0.86	2.44	11192	1502	5	0	0	0	0	logfile
✔	8ZL9	38897	2024-11-14	2024-05-17	4.36	4.49	4.31	4.4	0.005	1.01	1.0	0.06	14.25	0.01	2.243	9.31	0.14	7.6	92.0	0.4	-2.34	0.56	0.51	—	4.4	0.003	0.70	0.0	0.05	14.30	0.01	2.400	16.62	0.00	8.0	91.9	0.1	-1.94	1.26	0.57	0.52	—	6644	838	5	0	0	0	0	logfile
✔	8ZL9	60223	2024-11-14	2024-05-17	4.36	4.49	4.31	4.4	0.005	1.01	1.0	0.06	14.25	0.01	2.243	9.31	0.14	7.6	92.0	0.4	-2.34	0.56	0.51	—	4.4	0.003	0.70	0.0	0.05	14.30	0.01	2.400	16.62	0.00	8.0	91.9	0.1	-1.94	1.26	0.57	0.52	—	6644	838	5	0	0	0	0	logfile
✔	9FD2	50325	2024-11-19	2024-05-16	3.4	2.22	—	1.5	0.004	0.61	0.0	0.04	18.71	0.01	1.905	12.64	0.38	4.0	96.0	0.0	-0.24	0.72	0.73	2.19	1.4	0.005	0.65	0.0	0.05	19.13	0.00	1.944	11.35	4.27	4.4	95.6	0.0	-0.15	0.33	0.75	0.77	2.20	51949	6232	30	104	11	0	0	logfile
✔	9FCJ	50317	2024-11-14	2024-05-15	2.7	2.89	2.64	2.9	0.003	0.55	0.0	0.04	16.44	0.00	2.213	4.76	0.56	1.6	98.4	0.0	0.06	0.59	0.86	3.47	2.9	0.003	0.58	0.0	0.04	17.25	0.00	2.569	4.60	1.68	2.4	97.6	0.0	1.37	0.46	0.52	0.85	2.92	3174	389	5	0	2	29	0	logfile
✔	8ZJE	60142	2024-11-15	2024-05-14	3.07	3.62	3.23	3.6	0.005	0.71	0.0	0.05	14.59	0.01	2.202	5.20	0.33	3.9	96.1	0.0	1.20	0.57	0.80	3.04	3.6	0.002	0.57	0.0	0.04	15.77	0.00	2.494	5.32	2.74	2.9	97.1	0.0	1.19	0.47	0.54	0.77	2.19	8743	1135	7	0	3	0	0	logfile
✔	8ZJF	60143	2024-11-16	2024-05-14	2.7	2.89	2.81	2.9	0.003	0.65	0.0	0.04	16.73	0.00	2.127	9.93	2.50	7.2	92.8	0.0	-1.43	0.59	0.69	1.29	2.9	0.004	0.71	0.0	0.05	16.75	0.00	2.082	7.19	3.17	7.1	92.9	0.0	-1.22	1.68	0.70	0.82	2.37	10917	1419	4	0	6	0	0	logfile
✔	8ZJD	60141	2024-11-15	2024-05-14	3.06	3.48	3.18	3.4	0.004	0.67	0.0	0.05	14.50	0.00	2.200	6.08	0.54	3.3	96.7	0.0	0.74	0.63	0.83	2.57	3.4	0.003	0.63	0.0	0.04	15.69	0.00	2.425	6.14	2.27	3.6	96.4	0.0	1.02	0.85	0.60	0.81	2.21	8820	1144	6	0	0	0	0	logfile
✔	8ZHo	60110	2024-11-17	2024-05-11	3.54	3.81	3.50	3.8	0.003	0.54	0.0	0.04	15.24	0.00	2.273	4.14	0.62	3.8	96.2	0.0	-0.09	0.68	0.66	1.28	3.7	0.003	0.61	0.0	0.04	15.76	0.00	2.429	7.83	3.28	4.9	95.1	0.0	-0.07	1.13	0.68	0.64	1.83	11423	1498	6	0	1	0	0	logfile

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