Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZHN	60109	2024-11-19	2024-05-11	4.12	4.26	4.04	3.8	0.003	0.65	0.0	0.05	12.78	0.01	2.211	6.61	0.66	4.0	96.0	0.0	-1.31	0.71	0.65	—	3.9	0.006	0.79	0.0	0.05	12.69	0.01	2.317	15.74	0.00	7.3	92.7	0.0	-1.29	1.68	0.75	0.77	—	45273	5829	30	0	57	0	0	logfile
✔	8ZHM	60108	2024-11-19	2024-05-11	3.39	3.86	3.40	3.4	0.003	0.57	0.0	0.05	14.34	0.00	2.181	6.31	0.80	3.7	96.3	0.0	-1.04	0.81	0.75	1.35	3.5	0.003	0.59	0.0	0.04	14.84	0.00	2.484	9.09	2.48	4.2	95.7	0.1	-0.57	0.65	0.83	0.80	1.52	45273	5829	30	0	57	0	0	logfile
✔	8ZHG	60102	2024-11-14	2024-05-10	3.51	3.69	3.44	3.7	0.003	0.66	0.0	0.04	17.55	0.01	2.273	4.79	1.11	4.3	95.7	0.0	-1.47	0.61	0.72	1.21	3.6	0.002	0.60	0.0	0.04	17.36	0.00	2.563	6.18	4.99	4.3	95.7	0.0	-0.90	1.97	0.64	0.77	1.26	3326	425	4	0	2	0	0	logfile
✔	8ZH8	60096	2024-11-16	2024-05-10	3.19	3.97	3.21	3.6	0.003	0.67	0.0	0.04	12.78	0.00	2.207	11.98	0.10	2.9	97.1	0.0	0.57	0.68	0.68	1.06	3.7	0.003	0.80	0.0	0.04	16.31	0.00	2.441	13.40	2.30	3.7	96.3	0.0	0.51	0.97	0.70	0.76	0.76	10048	1316	8	0	1	0	0	logfile
✔	9FAC	50272	2024-11-15	2024-05-10	3.9	3.38	3.90	4.3	0.007	1.17	0.0	0.07	11.94	0.01	2.226	11.78	0.00	3.8	96.2	0.0	-4.35	0.47	0.63	2.06	3.8	0.005	1.18	1.0	0.05	15.32	0.01	2.431	14.20	2.68	9.2	90.8	0.0	-4.40	1.96	0.48	0.66	1.70	8595	585	10	0	5	0	4190	logfile
✔	9BQV	44825	2024-11-19	2024-05-10	3.2	3.93	3.27	3.7	0.021	1.35	2.0	0.07	14.53	0.01	2.156	7.50	0.00	5.9	93.9	0.2	-2.27	0.86	0.82	2.67	3.7	0.003	0.56	0.0	0.04	15.77	0.00	2.521	5.43	1.31	2.5	97.3	0.2	1.78	1.19	0.88	0.86	2.05	18697	2316	2	0	0	0	0	logfile
✔	9FAA	50270	2024-11-15	2024-05-10	3.6	3.34	3.60	3.9	0.010	1.10	0.0	0.05	11.73	0.01	2.020	10.96	0.00	1.7	98.3	0.0	-4.21	0.52	0.75	3.32	3.9	0.003	0.66	0.0	0.05	13.28	0.00	2.471	6.73	1.84	6.2	93.8	0.0	-4.00	1.11	0.52	0.75	2.81	8695	590	10	0	5	0	4235	logfile
✔	9FAB	50271	2024-11-15	2024-05-10	3.9	3.54	3.80	3.6	0.010	1.57	0.0	0.07	11.24	0.01	2.042	7.97	0.00	1.7	98.3	0.0	-4.50	0.44	0.68	2.55	3.7	0.003	0.68	0.0	0.05	14.74	0.00	2.507	6.81	2.68	9.4	90.6	0.0	-5.27	1.34	0.45	0.70	2.06	8595	585	10	0	5	0	4190	logfile
✔	8ZGS	60089	2024-11-15	2024-05-09	3.04	3.27	3.08	3.3	0.007	0.75	0.0	0.05	18.16	0.01	2.217	6.51	0.61	4.3	95.7	0.0	0.87	0.62	0.79	2.99	3.3	0.004	0.58	0.0	0.04	17.12	0.00	2.434	3.42	3.94	4.3	95.7	0.0	1.36	0.33	0.65	0.82	2.69	8915	1077	13	0	14	0	0	logfile
✔	8ZGT	60090	2024-11-15	2024-05-09	2.96	3.17	2.99	3.2	0.004	0.79	0.0	0.05	18.71	0.01	2.251	2.24	4.14	4.9	95.0	0.1	-0.71	0.65	0.81	3.12	3.2	0.003	0.61	0.0	0.05	17.25	0.00	2.442	3.48	2.83	4.6	95.3	0.1	1.01	0.32	0.63	0.80	2.90	8915	1077	13	0	14	0	0	logfile
✔	8ZFL	60064	2024-11-18	2024-05-08	2.61	2.71	2.56	2.8	0.003	0.51	0.0	0.04	16.53	0.00	2.236	3.12	0.69	2.1	97.9	0.0	1.07	0.69	0.87	4.20	2.8	0.002	0.60	0.0	0.05	16.89	0.00	2.628	2.95	1.71	2.0	98.0	0.0	2.43	0.55	0.73	0.90	4.31	17070	2060	20	0	25	0	0	logfile
✔	9BP6	44762	2024-11-17	2024-05-07	3.1	3.37	3.02	3.3	0.005	0.88	0.0	0.05	16.03	0.01	1.963	3.03	0.14	2.7	97.3	0.0	0.29	0.66	0.75	3.00	3.3	0.003	0.58	0.0	0.04	17.08	0.00	1.926	5.58	2.75	2.2	97.8	0.0	0.64	0.67	0.74	0.83	3.09	13631	1732	8	0	8	0	0	logfile
✔	8ZEE	60026	2024-11-19	2024-05-06	2.9	2.66	2.99	3.3	0.007	1.19	0.0	0.04	18.03	0.01	2.080	5.25	0.00	2.7	97.2	0.1	1.55	0.78	0.82	2.75	3.3	0.004	0.61	0.0	0.04	16.89	0.00	2.334	5.69	1.53	3.5	96.5	0.0	1.59	0.41	0.79	0.85	2.47	20218	2101	26	0	70	0	0	logfile
✔	8ZE0	60019	2024-11-17	2024-05-04	2.54	3.65	2.56	3.2	0.002	0.55	0.0	0.04	17.02	0.00	2.254	8.17	0.28	2.3	97.4	0.3	2.35	0.68	0.71	2.45	3.3	0.004	0.78	0.0	0.04	16.97	0.00	2.440	10.57	2.04	2.2	97.5	0.3	2.55	1.56	0.68	0.85	3.04	12880	1568	4	0	0	0	0	logfile
✔	8ZE2	60021	2024-11-17	2024-05-04	2.57	3.08	2.65	3.0	0.008	0.84	0.0	0.05	17.75	0.01	2.033	21.00	0.56	5.6	94.2	0.3	-1.29	0.61	0.72	1.22	3.0	0.005	0.92	0.0	0.05	17.56	0.01	2.360	18.04	2.54	5.1	94.9	0.0	0.16	0.56	0.55	0.73	1.67	12972	1568	8	0	8	0	0	logfile
✔	8ZE3	60022	2024-11-16	2024-05-04	3.17	3.37	3.22	3.5	0.004	0.68	0.0	0.04	19.03	0.00	2.064	9.22	2.88	3.8	96.2	0.0	1.13	0.51	0.77	1.87	3.4	0.004	0.72	1.0	0.04	18.22	0.00	1.590	8.57	4.09	3.3	96.7	0.0	2.38	0.36	0.60	0.83	1.83	12072	1496	8	0	4	0	0	logfile
✔	8ZDV	60014	2024-11-16	2024-05-03	2.8	3.02	2.82	3.1	0.006	0.84	0.0	0.06	14.60	0.01	2.022	8.78	0.00	1.8	98.2	0.0	-0.56	0.73	0.78	4.03	3.1	0.004	0.69	0.0	0.05	15.57	0.00	2.469	9.06	1.86	3.5	96.5	0.0	-0.92	0.45	0.72	0.80	4.26	12210	1473	15	0	33	0	0	logfile
✔	8ZDZ	60018	2024-11-16	2024-05-03	2.64	3.50	2.71	3.3	0.004	0.63	0.0	0.04	17.96	0.00	2.260	6.41	2.35	2.7	97.3	0.0	2.47	0.61	0.84	1.84	3.3	0.003	0.66	0.0	0.04	17.84	0.00	2.497	5.55	2.27	2.5	97.5	0.0	3.99	1.41	0.58	0.81	1.86	12024	1496	4	0	0	0	0	logfile
✔	9BoG	44735	2024-11-15	2024-05-03	3.99	2.85	3.93	3.9	0.002	0.54	0.0	0.04	14.61	0.00	2.218	6.86	0.29	3.2	96.8	0.0	0.13	0.76	0.72	2.01	2.3	0.003	0.70	0.0	0.05	15.34	0.00	2.378	8.79	5.83	4.6	95.4	0.0	0.11	1.33	0.77	0.76	2.11	9370	1438	4	0	0	0	0	logfile
✔	9F6J	50226	2024-11-15	2024-05-01	3.9	4.11	3.87	4.0	0.003	0.64	0.0	0.04	16.08	0.01	2.253	1.83	0.00	1.1	98.9	0.0	-1.09	0.75	0.79	1.83	4.0	0.003	0.62	0.0	0.04	17.92	0.00	2.525	4.86	2.12	2.2	97.8	0.0	0.64	1.68	0.76	0.81	1.61	9751	1118	4	32	1	0	0	logfile

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