Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WGR	37515	2024-11-15	2023-09-22	2.75	3.15	2.82	3.1	0.004	0.71	0.0	0.04	17.04	0.00	2.026	4.64	2.38	3.1	96.7	0.2	1.68	0.54	0.77	1.91	3.1	0.003	0.57	0.0	0.04	17.08	0.00	2.474	2.94	1.08	3.1	96.9	0.0	1.66	1.22	0.53	0.77	3.18	8830	548	2	0	4	34	4371	logfile
✔	8UBB	42081	2024-11-16	2023-09-22	3.23	3.27	3.07	3.2	0.010	1.21	1.0	0.06	25.82	0.01	2.199	41.97	20.00	10.7	85.7	3.6	-4.10	0.70	0.74	3.02	3.2	0.005	0.78	0.0	0.04	22.99	0.01	2.298	22.87	3.09	6.8	92.5	0.7	-0.50	0.95	0.74	0.76	1.79	10349	891	9	148	0	0	0	logfile
✔	8UBF	42085	2024-11-15	2023-09-22	3.61	3.77	3.56	3.6	0.007	0.98	0.0	0.05	24.77	0.01	2.306	14.72	22.69	9.2	87.6	3.2	-3.90	0.73	0.73	2.15	3.6	0.004	0.77	0.0	0.04	21.37	0.01	2.256	14.72	2.99	7.3	92.5	0.2	-0.13	1.41	0.76	0.75	1.64	9291	882	8	102	0	0	0	logfile
✔	8UBC	42082	2024-11-15	2023-09-22	3.29	3.39	3.14	3.3	0.007	1.06	0.0	0.05	25.64	0.01	2.145	37.84	25.31	10.5	84.9	4.6	-5.01	0.69	0.73	2.33	3.3	0.004	0.80	0.0	0.04	22.61	0.01	2.307	22.97	5.17	8.0	91.7	0.3	-0.94	1.35	0.74	0.75	1.21	9092	880	8	93	0	0	0	logfile
✔	8UB9	42079	2024-11-16	2023-09-22	3.07	3.37	3.15	3.3	0.011	1.29	1.0	0.10	24.95	0.01	2.190	21.06	18.47	9.3	87.7	3.0	-3.63	0.69	0.76	2.93	3.3	0.004	0.71	0.0	0.04	22.50	0.01	2.173	14.73	2.28	6.0	93.5	0.5	-0.05	0.82	0.71	0.77	2.07	10370	893	9	148	0	0	0	logfile
✔	8UBA	42080	2024-11-16	2023-09-22	3.2	3.46	3.22	3.4	0.011	1.25	0.0	0.10	23.38	0.01	2.202	28.19	7.20	8.2	89.7	2.0	-3.80	0.72	0.77	2.89	3.4	0.004	0.71	0.0	0.04	22.01	0.01	2.374	16.06	2.80	5.9	93.6	0.6	0.10	0.82	0.75	0.78	2.01	10299	897	9	143	0	0	0	logfile
✔	8UB8	42078	2024-11-16	2023-09-22	3.28	3.44	3.22	3.4	0.011	1.43	0.0	0.11	23.56	0.01	1.887	27.19	6.27	8.7	89.0	2.3	-4.02	0.65	0.72	3.22	3.4	0.003	0.62	0.0	0.03	21.98	0.00	2.359	11.65	2.67	5.8	93.8	0.5	0.52	1.19	0.74	0.80	3.22	10299	897	9	143	0	0	0	logfile
✔	8WGZ	37523	2024-11-19	2023-09-22	3.22	3.49	3.31	3.3	0.005	0.61	0.0	0.04	13.61	0.00	2.111	12.04	0.00	5.9	94.0	0.1	-0.63	0.57	0.45	1.58	3.3	0.005	0.66	0.0	0.05	15.71	0.00	2.379	11.42	2.32	6.2	93.7	0.1	-1.03	0.50	0.64	0.57	1.32	51396	6600	13	5	0	0	0	logfile
✔	8UB7	42077	2024-11-16	2023-09-22	3.2	3.38	3.19	3.3	0.011	1.53	0.0	0.10	25.46	0.01	2.230	13.19	20.48	9.1	88.6	2.3	-3.80	0.64	0.72	2.49	3.3	0.004	0.68	0.0	0.04	22.50	0.01	2.062	11.31	4.02	6.0	93.4	0.6	0.16	1.24	0.77	0.83	2.20	10399	893	10	148	2	0	0	logfile
✔	8WH9	37535	2024-11-17	2023-09-22	3.31	3.58	3.37	3.4	0.009	1.19	0.0	0.07	25.84	0.01	2.216	13.31	1.08	7.4	91.7	0.9	-2.77	0.81	0.72	0.93	3.3	0.003	0.64	0.0	0.04	26.03	0.00	2.497	7.39	1.77	5.5	94.4	0.1	1.39	1.93	0.87	0.86	1.07	15328	1188	12	284	2	0	0	logfile
✔	8WHA	37537	2024-11-19	2023-09-22	4.05	3.88	4.03	3.7	0.010	1.29	0.0	0.07	24.53	0.01	2.216	14.72	1.40	8.5	90.6	0.9	-3.09	0.83	0.78	—	3.6	0.003	0.70	0.0	0.04	23.75	0.00	2.333	9.72	0.07	5.7	94.2	0.1	0.43	1.44	0.86	0.82	—	19084	1646	14	284	4	0	0	logfile
✔	8UAH	42064	2024-11-14	2023-09-21	3.3	3.50	3.24	3.5	0.005	1.03	0.0	0.05	20.84	0.01	2.182	11.87	3.90	13.0	86.4	0.7	-4.43	0.72	0.83	1.72	3.5	0.005	1.41	1.0	0.05	20.11	0.00	2.229	9.47	5.85	14.5	85.0	0.4	-3.92	0.88	0.73	0.85	2.03	3534	451	2	0	0	0	0	logfile
✔	8QMA	18496	2024-11-19	2023-09-21	3.5	2.52	—	1.8	0.004	0.69	0.0	0.05	13.65	0.01	1.997	5.82	0.74	4.0	95.7	0.2	-1.28	0.80	0.74	3.41	1.7	0.005	0.64	0.0	0.04	15.15	0.00	1.855	7.55	1.53	3.0	96.9	0.0	0.72	1.19	0.82	0.78	2.90	52064	6421	23	0	4	0	0	logfile
✔	8WGE	37511	2024-11-17	2023-09-21	3.4	3.15	3.27	3.2	0.002	0.44	0.0	0.04	15.64	0.00	2.292	6.70	0.34	1.8	98.2	0.0	0.72	0.68	0.86	2.82	3.2	0.003	0.53	0.0	0.04	16.20	0.00	2.558	6.36	2.09	2.7	97.3	0.0	1.19	0.28	0.67	0.86	2.36	13515	1740	10	0	5	0	0	logfile
✔	8QLo	18486	2024-11-14	2023-09-20	2.57	3.41	2.60	3.2	0.009	1.18	1.0	0.08	15.29	0.01	2.209	14.78	2.16	4.5	95.4	0.1	-1.41	0.76	0.78	2.76	3.2	0.004	0.67	0.0	0.04	16.63	0.00	2.412	8.25	3.18	2.6	97.4	0.0	0.49	0.88	0.77	0.80	2.82	7282	892	2	0	0	0	0	logfile
✔	8WG8	37505	2024-11-15	2023-09-20	2.71	3.54	2.73	3.3	0.005	0.68	0.0	0.05	13.93	0.00	2.170	7.15	2.13	3.8	96.2	0.0	0.12	0.64	0.79	2.81	3.3	0.004	0.69	0.0	0.04	15.83	0.00	2.464	6.15	2.60	3.9	96.1	0.0	0.78	0.50	0.63	0.80	2.53	8043	1037	6	0	0	0	0	logfile
✔	8WG7	37504	2024-11-15	2023-09-20	2.54	3.39	2.59	3.2	0.003	0.54	0.0	0.04	13.04	0.00	2.167	8.69	0.12	3.6	96.2	0.3	1.50	0.67	0.78	2.51	3.2	0.006	1.04	2.0	0.06	16.07	0.01	2.229	7.88	1.74	3.6	96.4	0.0	1.59	0.44	0.65	0.78	2.24	8123	1030	5	0	0	0	0	logfile
✔	8WG3	37501	2024-11-14	2023-09-20	3.4	3.61	3.39	3.6	0.009	1.47	1.0	0.08	16.49	0.01	2.528	0.86	3.30	5.6	94.4	0.0	-2.32	0.50	0.75	2.29	3.6	0.003	0.65	0.0	0.04	16.09	0.00	2.367	6.47	2.68	3.2	96.8	0.0	1.56	1.70	0.55	0.76	0.95	4585	548	2	0	4	0	0	logfile
✔	8UA7	42053	2024-11-16	2023-09-20	3.3	3.66	3.33	3.4	0.004	0.67	0.0	0.04	28.72	0.01	2.099	12.79	5.54	10.6	89.0	0.4	-1.00	0.78	0.77	0.81	3.4	0.004	0.88	1.0	0.04	28.76	0.01	2.066	10.74	8.39	10.4	89.0	0.7	-0.38	1.03	0.78	0.77	0.87	11263	778	10	260	0	0	0	logfile
✔	8U9Y	42041	2024-11-17	2023-09-20	3.7	4.00	3.73	3.9	0.005	0.82	0.0	0.07	23.72	0.01	2.079	7.40	0.14	9.6	90.4	0.0	-0.76	0.72	0.75	2.67	3.9	0.003	0.68	0.0	0.04	16.97	0.01	2.263	6.41	2.93	7.8	92.1	0.1	-0.42	1.65	0.68	0.73	2.00	12951	881	10	0	14	0	6188	logfile

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