Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WG5	37503	2024-11-17	2023-09-20	3.05	3.73	3.03	3.0	0.003	0.59	0.0	0.04	26.06	0.00	2.099	12.21	0.32	2.6	97.4	0.0	1.36	0.83	0.71	0.29	3.0	0.005	0.70	0.0	0.04	26.95	0.00	2.079	10.80	2.42	2.5	97.5	0.0	1.47	1.58	0.91	0.87	1.21	14965	1135	12	294	0	0	0	logfile
✔	8WFL	37495	2024-11-14	2023-09-19	3.03	3.10	3.19	3.5	0.009	0.81	0.0	0.07	17.69	0.00	2.223	11.05	0.21	6.8	93.2	0.0	-0.36	0.54	0.79	2.07	3.2	0.003	0.61	0.0	0.04	18.14	0.00	2.572	8.54	5.78	5.8	94.2	0.0	0.33	0.33	0.53	0.79	1.89	4414	552	2	0	1	0	0	logfile
✔	8WFi	37492	2024-11-14	2023-09-19	2.58	2.82	2.57	2.8	0.002	0.57	0.0	0.04	12.58	0.00	2.278	2.56	0.00	2.4	97.6	0.0	1.63	0.62	0.81	3.69	2.8	0.003	0.55	0.0	0.04	15.08	0.00	2.213	2.33	1.32	2.8	97.2	0.0	2.08	0.89	0.65	0.84	3.32	4347	543	3	0	3	37	0	logfile
✔	8WFK	37494	2024-11-14	2023-09-19	3.22	3.53	3.37	3.6	0.004	0.62	0.0	0.04	16.76	0.00	2.137	5.06	0.00	5.0	95.0	0.0	-1.97	0.54	0.85	2.36	3.6	0.003	0.61	0.0	0.04	16.78	0.00	2.338	4.14	2.60	5.4	94.6	0.0	-0.35	0.39	0.59	0.87	2.05	4371	546	2	0	4	0	0	logfile
✔	8U8V	42028	2024-11-16	2023-09-18	2.74	2.20	—	2.3	0.005	0.89	0.0	0.07	18.50	0.01	2.092	6.55	0.46	4.0	96.0	0.0	-1.29	0.59	0.54	2.22	2.1	0.004	0.67	0.0	0.04	19.73	0.01	1.978	6.69	2.83	4.3	95.7	0.1	-0.04	0.56	0.76	0.75	1.79	11956	1392	7	61	2	0	0	logfile
✔	8U8U	42027	2024-11-17	2023-09-18	2.9	2.27	2.93	2.2	0.005	0.84	0.0	0.07	17.58	0.01	2.234	5.98	0.17	1.7	98.3	0.0	0.14	0.62	0.59	2.05	2.0	0.002	0.59	0.0	0.04	19.18	0.00	2.359	5.69	2.20	2.3	97.7	0.0	1.12	0.56	0.78	0.79	1.64	12344	1398	7	61	1	0	0	logfile
✔	8WEJ	37477	2024-11-16	2023-09-18	2.79	2.58	2.84	3.0	0.007	0.91	0.0	0.05	14.70	0.01	1.991	3.56	2.33	3.6	96.4	0.0	-0.11	0.72	0.78	4.06	3.0	0.003	0.65	0.0	0.04	16.47	0.00	1.967	10.46	1.68	3.3	96.7	0.0	0.24	1.16	0.70	0.79	3.43	10659	1336	11	0	12	1	0	logfile
✔	8U8Z	42030	2024-11-15	2023-09-18	3.25	4.03	3.29	3.8	0.003	0.66	0.0	0.05	17.59	0.01	2.082	10.48	0.91	2.2	97.8	0.0	0.97	0.87	0.82	2.07	3.7	0.003	0.61	0.0	0.04	17.86	0.00	2.520	7.40	1.93	2.5	97.5	0.0	0.70	0.88	0.87	0.85	2.20	8147	1034	4	0	2	0	0	logfile
✔	8WE4	37471	2024-11-17	2023-09-17	2.91	2.35	2.96	2.1	0.004	0.70	0.0	0.05	13.30	0.01	1.872	7.79	0.45	5.9	93.6	0.5	-0.51	0.76	0.76	3.54	2.1	0.003	0.66	0.0	0.04	15.98	0.00	1.965	7.11	1.70	6.4	93.4	0.2	-0.58	0.94	0.79	0.79	2.64	8281	1017	8	0	11	0	0	logfile
✔	8U8F	42023	2024-11-17	2023-09-17	3.49	3.84	3.55	3.9	0.003	0.54	0.0	0.04	15.46	0.01	2.124	7.60	0.13	2.5	97.4	0.1	1.41	0.59	0.68	1.19	3.9	0.002	0.55	0.0	0.04	16.16	0.00	2.336	5.81	2.28	3.4	96.6	0.0	0.77	1.78	0.60	0.74	1.68	13891	889	5	0	1	0	6925	logfile
✔	8U89	42018	2024-11-16	2023-09-16	3.3	3.66	3.52	3.7	0.003	0.70	0.0	0.04	16.18	0.01	2.091	8.51	0.54	2.4	97.6	0.0	0.98	0.67	0.79	1.47	3.7	0.003	0.59	0.0	0.04	16.93	0.00	2.135	7.50	2.27	2.5	97.5	0.0	1.49	1.14	0.68	0.80	1.43	9928	1241	4	0	2	0	0	logfile
✔	8WE1	37470	2024-11-16	2023-09-16	2.47	2.24	2.54	2.0	0.004	0.61	0.0	0.04	18.67	0.00	2.001	5.63	3.89	4.1	95.9	0.0	0.67	0.80	0.79	2.48	2.0	0.003	0.62	0.0	0.04	17.10	0.00	2.193	4.38	4.03	3.9	96.1	0.0	0.50	0.26	0.83	0.83	2.49	6559	791	6	0	11	0	0	logfile
✔	8WDY	37467	2024-11-16	2023-09-16	2.69	2.29	2.80	2.1	0.004	0.76	0.0	0.05	14.72	0.01	2.000	5.79	1.44	3.8	96.1	0.1	0.26	0.80	0.80	3.74	2.1	0.002	0.58	0.0	0.04	16.18	0.00	2.102	3.13	1.88	2.7	97.2	0.1	0.88	0.40	0.82	0.83	2.97	6548	791	6	0	11	0	0	logfile
✔	8WDZ	37468	2024-11-16	2023-09-16	2.71	2.24	2.74	2.0	0.004	0.59	0.0	0.04	13.56	0.00	2.004	5.55	0.43	3.7	96.3	0.0	0.07	0.78	0.79	3.27	2.0	0.002	0.55	0.0	0.04	15.73	0.00	2.180	3.52	1.30	2.3	97.6	0.1	0.47	0.92	0.82	0.83	2.64	6559	791	6	0	11	0	0	logfile
✔	8QKo	18468	2024-11-19	2023-09-16	3.73	4.47	3.64	4.1	0.003	0.52	0.0	0.03	13.37	0.01	1.736	9.97	3.14	2.7	97.3	0.0	2.37	0.51	0.74	0.50	4.1	0.003	0.70	0.0	0.04	16.47	0.00	2.495	9.87	3.19	2.4	97.6	0.0	2.37	2.57	0.54	0.86	2.21	18492	2268	12	0	0	0	0	logfile
✔	8WE0	37469	2024-11-16	2023-09-16	2.8	2.28	2.85	2.0	0.007	1.15	3.0	0.24	17.15	0.03	2.000	17.16	8.20	10.0	86.7	3.3	-1.66	0.76	0.75	3.40	2.0	0.003	0.71	0.0	0.04	16.78	0.01	1.948	6.11	3.45	7.6	92.1	0.3	-0.19	1.34	0.81	0.80	2.79	6538	791	5	0	10	0	0	logfile
✔	8QKi	18463	2024-11-16	2023-09-15	3.46	4.02	3.31	3.8	0.004	0.75	0.0	0.05	12.59	0.00	2.031	8.10	0.54	3.4	96.6	0.0	2.14	0.60	0.80	2.58	3.8	0.003	0.64	0.0	0.04	14.40	0.00	2.483	9.29	2.33	3.4	96.6	0.0	3.54	0.94	0.59	0.88	2.32	10188	1242	12	0	6	0	0	logfile
✔	8QKK	18464	2024-11-14	2023-09-15	3.23	3.44	3.28	3.6	0.002	0.49	0.0	0.04	14.14	0.00	2.132	9.00	0.00	2.9	97.1	0.0	2.28	0.62	0.79	1.22	3.6	0.005	1.10	0.0	0.05	15.77	0.00	2.460	10.24	1.85	2.2	97.8	0.0	1.63	0.79	0.64	0.80	1.17	5581	730	1	0	0	0	0	logfile
✔	8QJX	18453	2024-11-14	2023-09-14	3.3	3.68	3.02	3.3	0.005	0.59	0.0	0.05	13.62	0.00	1.871	5.41	0.00	3.7	96.3	0.0	-0.83	0.88	0.87	4.13	3.3	0.007	0.72	0.0	0.05	15.19	0.00	2.411	7.09	1.80	3.6	96.4	0.0	-0.67	0.79	0.88	0.88	3.54	7868	997	5	0	0	0	0	logfile
✔	8QK3	18455	2024-11-14	2023-09-14	3.2	4.00	3.10	3.4	0.003	0.60	0.0	0.04	12.49	0.00	1.913	6.28	0.12	3.1	96.9	0.0	-0.49	0.87	0.81	3.51	3.4	0.004	0.78	0.0	0.05	14.56	0.00	2.480	9.46	2.12	3.9	96.1	0.0	-0.63	0.93	0.87	0.86	2.99	7535	955	5	0	0	0	0	logfile

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