Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WDB	37460	2024-11-18	2023-09-14	2.86	3.12	2.90	3.0	0.008	0.89	2.0	0.05	13.65	0.01	2.006	4.68	0.55	7.9	91.7	0.4	-2.94	0.74	0.90	4.03	3.0	0.004	0.65	0.0	0.04	15.44	0.00	1.947	3.71	1.58	6.1	93.9	0.0	-0.01	0.38	0.73	0.91	3.22	12322	1619	5	0	4	0	0	logfile
✔	8QK3	18455	2024-11-14	2023-09-14	3.2	4.00	3.10	3.4	0.003	0.60	0.0	0.04	12.49	0.00	1.913	6.28	0.12	3.1	96.9	0.0	-0.49	0.87	0.81	3.51	3.4	0.004	0.78	0.0	0.05	14.56	0.00	2.480	9.46	2.12	3.9	96.1	0.0	-0.63	0.93	0.87	0.86	2.99	7535	955	5	0	0	0	0	logfile
✔	8WD9	37458	2024-11-18	2023-09-14	3.35	3.68	3.40	3.6	0.007	0.93	6.0	0.06	14.66	0.01	2.032	9.36	1.02	12.3	87.4	0.2	-4.16	0.75	0.88	2.81	3.6	0.003	0.70	0.0	0.04	15.15	0.00	2.415	5.18	2.05	7.9	92.1	0.0	-1.11	0.41	0.75	0.89	2.26	12355	1626	5	0	2	0	0	logfile
✔	8QK6	18457	2024-11-15	2023-09-14	3.18	3.70	2.81	3.4	0.005	0.57	0.0	0.05	9.59	0.00	2.154	4.31	1.09	1.5	98.5	0.0	4.06	0.63	0.76	2.53	3.3	0.003	0.56	0.0	0.04	13.31	0.00	2.395	6.07	1.73	2.2	97.8	0.0	3.59	0.99	0.60	0.90	2.31	10056	1230	12	0	6	0	0	logfile
✔	8QJY	18454	2024-11-14	2023-09-14	3.5	4.18	3.43	3.7	0.003	0.61	0.0	0.05	13.67	0.00	1.682	8.80	0.14	2.7	97.3	0.0	-0.59	0.85	0.80	3.37	3.9	0.005	0.78	0.0	0.05	15.42	0.01	2.408	10.57	2.95	3.9	96.1	0.0	-0.56	0.93	0.87	0.85	2.77	6287	798	4	0	0	0	0	logfile
✔	8WDA	37459	2024-11-18	2023-09-14	3.26	3.59	3.32	3.5	0.004	0.72	1.0	0.05	14.24	0.00	2.231	7.11	0.55	8.9	91.0	0.1	-4.40	0.75	0.88	2.94	3.5	0.004	0.88	0.0	0.04	15.06	0.00	2.418	4.66	1.18	7.2	92.8	0.0	-1.24	0.34	0.72	0.89	2.59	12359	1626	6	0	2	0	0	logfile
✔	8WD8	37457	2024-11-17	2023-09-14	2.9	3.05	2.88	3.1	0.004	0.70	0.0	0.05	19.79	0.01	1.852	3.54	0.65	3.5	96.5	0.0	-1.91	0.77	0.89	2.83	3.1	0.003	0.53	0.0	0.04	20.00	0.00	1.960	4.83	1.81	2.5	97.5	0.0	0.97	0.93	0.70	0.89	3.32	13667	1500	9	64	7	0	0	logfile
✔	8QJJ	18448	2024-11-14	2023-09-13	3.35	3.35	3.18	3.3	0.012	1.98	0.0	0.10	12.60	0.01	2.538	0.43	0.00	2.3	97.7	0.0	-2.06	0.33	0.77	5.23	3.3	0.002	0.57	0.0	0.05	16.15	0.00	2.543	2.99	0.51	4.1	95.9	0.0	-1.52	2.30	0.33	0.78	4.36	7032	450	6	0	0	0	3588	logfile
✔	8WCP	37445	2024-11-13	2023-09-13	3.28	3.36	2.33	3.4	0.005	0.83	0.0	0.06	10.78	0.00	2.482	16.18	0.00	11.1	88.9	0.0	-5.74	0.39	0.86	4.76	3.4	0.003	0.58	0.0	0.05	13.43	0.00	2.626	3.35	1.33	7.4	92.6	0.0	-3.85	0.95	0.37	0.87	5.82	1536	168	9	0	57	0	0	logfile
✔	8WCN	37444	2024-11-14	2023-09-13	3.2	2.54	2.95	3.1	0.004	0.72	0.0	0.04	16.65	0.00	1.902	13.05	0.50	2.7	97.3	0.0	0.54	0.72	0.71	1.25	3.0	0.004	0.71	0.0	0.04	17.20	0.00	1.903	10.01	4.99	3.5	96.5	0.0	1.23	0.89	0.76	0.75	1.18	6086	757	4	0	6	0	0	logfile
✔	8U5V	41934	2024-11-14	2023-09-13	2.77	3.23	2.79	3.2	0.008	1.07	1.0	0.06	11.86	0.01	2.429	2.55	1.24	2.0	98.0	0.0	-0.23	0.72	0.83	3.42	3.2	0.004	0.84	0.0	0.05	15.71	0.00	2.509	13.99	2.48	1.6	98.4	0.0	2.40	1.73	0.71	0.83	2.88	4397	556	2	0	2	0	0	logfile
✔	8U64	41943	2024-11-14	2023-09-13	3.13	2.26	3.11	1.9	0.004	0.59	0.0	0.04	18.15	0.00	2.121	11.26	0.48	5.5	94.5	0.0	-0.22	0.75	0.74	2.09	1.9	0.006	1.04	1.0	0.05	18.48	0.01	2.102	11.52	3.01	5.4	94.6	0.0	-0.04	1.35	0.76	0.75	2.23	7674	970	4	0	2	0	0	logfile
✔	8U65	41944	2024-11-14	2023-09-13	3.01	2.26	3.04	1.9	0.002	0.58	0.0	0.04	18.68	0.00	2.164	12.11	0.36	4.8	95.2	0.0	-0.65	0.71	0.67	1.30	1.5	0.005	1.08	2.0	0.05	18.99	0.01	1.988	14.94	4.59	5.2	94.8	0.0	-1.03	0.74	0.72	0.68	1.50	7636	967	4	0	2	0	0	logfile
✔	8U5X	41935	2024-11-14	2023-09-13	2.79	3.27	2.82	3.2	0.008	0.87	0.0	0.05	12.00	0.01	2.428	4.07	0.61	3.4	96.6	0.0	-0.95	0.72	0.82	3.61	3.2	0.004	0.87	0.0	0.05	16.08	0.00	2.274	15.50	1.63	2.3	97.7	0.0	2.01	2.63	0.68	0.80	2.52	4453	569	2	0	1	0	0	logfile
✔	8QJF	18446	2024-11-19	2023-09-13	2.86	3.33	2.60	3.1	0.005	0.58	0.0	0.05	10.05	0.00	2.238	3.68	0.57	1.6	98.4	0.0	3.35	0.65	0.74	2.87	3.0	0.004	0.86	2.0	0.04	13.79	0.00	1.968	6.35	0.95	1.4	98.6	0.0	3.59	0.72	0.64	0.91	2.86	19164	2352	24	0	12	0	0	logfile
✔	8WCS	37448	2024-11-15	2023-09-13	3.1	3.46	3.33	3.5	0.004	0.77	0.0	0.05	21.59	0.01	2.148	4.70	0.74	8.6	91.4	0.0	-2.55	0.70	0.76	1.66	3.5	0.004	0.90	1.0	0.04	21.40	0.01	2.143	8.79	2.85	9.2	90.8	0.1	-0.53	0.35	0.67	0.78	1.80	10096	1044	3	66	1	0	0	logfile
✔	8QJH	18447	2024-11-18	2023-09-13	2.91	3.37	2.84	3.2	0.002	0.41	0.0	0.04	9.69	0.00	2.029	8.45	1.29	1.2	98.8	0.0	3.25	0.59	0.88	3.33	3.3	0.004	0.76	2.0	0.05	15.35	0.00	2.109	6.61	2.47	1.5	98.5	0.0	3.04	0.67	0.60	0.90	2.83	16584	2076	12	0	0	0	0	logfile
✔	8U62	41941	2024-11-15	2023-09-13	3.3	2.42	3.25	2.1	0.003	0.61	0.0	0.04	18.21	0.00	2.175	8.41	0.59	2.8	97.2	0.0	0.96	0.73	0.77	2.12	2.1	0.004	0.60	0.0	0.04	18.66	0.00	2.462	8.35	4.11	3.3	96.7	0.0	1.51	0.73	0.73	0.77	2.14	7884	998	4	0	2	0	0	logfile
✔	8U53	41911	2024-11-15	2023-09-12	2.6	2.33	2.54	2.9	0.024	1.71	0.0	0.10	15.25	0.01	2.498	0.88	0.00	1.1	98.9	0.0	0.71	0.78	0.81	4.12	2.9	0.003	0.58	0.0	0.04	16.95	0.00	2.513	6.39	1.40	2.3	97.7	0.0	2.04	0.64	0.75	0.82	2.16	9562	1074	6	0	98	0	0	logfile
✔	8U5H	41922	2024-11-17	2023-09-12	3.23	3.43	—	3.4	0.005	0.71	0.0	0.06	30.15	0.00	2.200	13.39	0.85	4.6	95.4	0.0	0.94	0.72	0.83	0.90	3.4	0.007	0.71	0.0	0.04	30.20	0.00	2.127	12.64	3.54	5.0	95.0	0.0	1.20	0.39	0.71	0.84	1.12	13436	903	13	314	0	0	0	logfile

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