Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8U56	41913	2024-11-15	2023-09-12	2.75	3.46	2.81	3.3	0.007	0.96	0.0	0.05	13.55	0.01	2.398	4.25	0.00	1.5	98.5	0.0	-0.73	0.78	0.80	3.21	3.3	0.005	0.85	0.0	0.05	15.84	0.00	2.337	13.43	2.65	1.1	98.9	0.0	2.32	2.41	0.75	0.81	2.23	8588	1082	4	0	4	0	0	logfile
✔	8U5N	41929	2024-11-14	2023-09-12	3.0	3.95	2.93	3.8	0.006	0.86	0.0	0.05	12.97	0.01	2.281	1.83	0.80	3.0	97.0	0.0	-0.95	0.55	0.67	0.23	3.8	0.004	1.01	0.0	0.05	16.48	0.00	2.421	15.43	2.40	2.8	97.2	0.0	0.97	4.60	0.55	0.76	1.20	4535	577	2	0	1	0	0	logfile
✔	8U53	41911	2024-11-15	2023-09-12	2.6	2.33	2.54	2.9	0.024	1.71	0.0	0.10	15.25	0.01	2.498	0.88	0.00	1.1	98.9	0.0	0.71	0.78	0.81	4.12	2.9	0.003	0.58	0.0	0.04	16.95	0.00	2.513	6.39	1.40	2.3	97.7	0.0	2.04	0.64	0.75	0.82	2.16	9562	1074	6	0	98	0	0	logfile
✔	8QJ2	18442	2024-11-15	2023-09-12	3.4	2.53	3.44	2.2	0.002	0.49	0.0	0.04	10.54	0.00	2.203	6.27	2.47	7.3	92.7	0.0	-0.51	0.76	0.75	2.79	2.3	0.002	0.57	0.0	0.04	13.95	0.00	2.442	6.21	2.35	6.0	94.0	0.0	-0.04	0.35	0.74	0.74	1.67	8108	1064	6	0	0	0	0	logfile
✔	8U5Q	41930	2024-11-15	2023-09-12	2.4	3.32	2.38	3.1	0.006	0.90	0.0	0.05	12.12	0.01	2.402	3.55	0.23	2.7	97.3	0.0	-1.44	0.64	0.81	3.07	3.1	0.004	0.77	0.0	0.04	14.86	0.00	2.232	9.96	1.96	0.9	99.1	0.0	2.09	1.75	0.56	0.78	2.58	7896	1004	4	0	2	0	0	logfile
✔	8U54	41912	2024-11-16	2023-09-12	2.65	3.71	2.66	3.5	0.006	0.79	0.0	0.05	12.07	0.01	2.221	3.48	0.17	3.6	96.4	0.0	-1.34	0.61	0.67	0.86	3.5	0.003	0.90	0.0	0.05	15.61	0.00	2.491	14.43	1.61	2.4	97.6	0.0	2.06	1.60	0.63	0.80	1.61	10745	1359	4	0	2	0	0	logfile
✔	8U58	41914	2024-11-15	2023-09-12	2.45	3.14	2.64	2.9	0.007	1.06	0.0	0.05	11.80	0.01	2.518	2.26	0.00	2.0	98.0	0.0	-0.71	0.66	0.71	0.94	3.0	0.004	0.68	0.0	0.04	14.54	0.00	2.399	11.28	1.42	1.1	98.9	0.0	2.76	1.00	0.68	0.81	2.56	8884	1130	4	0	2	0	0	logfile
✔	8WC4	37430	2024-11-15	2023-09-11	3.1	3.34	3.05	3.3	0.006	0.81	2.0	0.06	13.02	0.01	2.216	7.71	0.93	4.4	95.6	0.0	-0.26	0.69	0.85	3.75	3.3	0.003	0.59	0.0	0.04	14.84	0.00	2.435	3.67	1.75	3.0	97.0	0.0	0.91	0.94	0.72	0.88	3.00	8394	1110	6	0	1	0	0	logfile
✔	8Qi7	18436	2024-11-17	2023-09-11	2.9	3.13	2.98	3.2	0.004	0.65	0.0	0.04	9.14	0.00	2.275	2.18	0.79	6.3	93.4	0.2	-3.83	0.69	0.88	5.75	3.2	0.002	0.60	0.0	0.04	13.56	0.00	2.613	2.28	0.33	2.1	97.9	0.0	0.74	0.95	0.70	0.87	3.88	14609	1848	8	0	0	117	0	logfile
✔	8WC8	37434	2024-11-15	2023-09-11	2.9	3.26	2.95	3.2	0.013	0.85	5.0	0.06	12.53	0.01	2.252	9.20	0.26	2.5	97.5	0.0	1.02	0.66	0.81	3.77	3.2	0.007	0.69	0.0	0.05	15.59	0.01	2.438	9.07	3.26	3.5	96.5	0.0	0.60	0.90	0.59	0.82	3.36	8062	1101	6	0	1	0	0	logfile
✔	8WCA	37436	2024-11-15	2023-09-11	3.48	3.71	3.50	3.7	0.006	0.87	5.0	0.06	13.52	0.01	2.105	10.04	0.89	4.3	95.7	0.0	-0.41	0.66	0.74	1.96	3.7	0.003	0.60	0.0	0.04	15.25	0.00	2.427	5.50	2.29	2.9	97.1	0.0	0.65	0.40	0.69	0.79	1.57	8160	1110	6	0	1	0	0	logfile
✔	8U4V	41899	2024-11-14	2023-09-11	2.99	3.26	2.62	3.1	0.006	1.12	2.0	0.06	16.56	0.00	2.063	13.44	0.83	3.4	96.6	0.0	0.66	0.71	0.79	3.57	3.1	0.004	0.91	0.0	0.04	16.22	0.00	2.332	6.53	1.94	2.2	97.8	0.0	1.34	1.59	0.83	0.90	3.50	6637	862	8	0	1	3	0	logfile
✔	8U4X	41903	2024-11-15	2023-09-11	2.81	2.24	2.84	2.0	0.002	0.56	0.0	0.04	17.69	0.00	1.334	9.77	2.11	2.7	97.3	0.0	0.85	0.78	0.79	1.88	2.0	0.004	0.66	0.0	0.04	18.26	0.01	2.528	9.07	3.99	2.9	97.1	0.0	0.51	0.75	0.79	0.80	2.32	7873	999	4	0	2	0	0	logfile
✔	8WC6	37432	2024-11-15	2023-09-11	3.2	3.26	3.10	3.3	0.008	0.99	2.0	0.07	13.34	0.01	2.130	8.47	1.10	5.1	94.9	0.0	-0.22	0.72	0.84	3.41	3.3	0.003	0.58	0.0	0.04	15.03	0.00	2.577	2.88	1.54	3.7	96.3	0.0	0.41	0.97	0.72	0.87	3.16	9183	1241	7	0	1	0	0	logfile
✔	8WC5	37431	2024-11-15	2023-09-11	3.3	2.84	2.93	3.0	0.006	1.09	3.0	0.08	14.80	0.01	2.206	10.49	1.80	6.6	93.4	0.0	-2.33	0.60	0.68	2.61	3.0	0.004	0.69	0.0	0.05	16.29	0.00	2.490	5.22	1.57	6.1	93.9	0.0	-1.09	1.29	0.62	0.73	2.29	8511	1111	6	0	1	0	0	logfile
✔	8WC7	37433	2024-11-15	2023-09-11	3.1	3.32	3.11	3.3	0.004	0.60	1.0	0.04	13.83	0.00	2.237	4.93	0.80	4.5	95.5	0.0	-0.58	0.67	0.83	3.30	3.3	0.002	0.54	0.0	0.04	15.64	0.00	2.414	2.89	1.03	4.1	95.9	0.0	0.22	0.93	0.71	0.86	2.89	8532	1122	6	0	1	0	0	logfile
✔	8U4P	41890	2024-11-15	2023-09-11	3.15	3.53	3.25	3.5	0.004	0.53	0.0	0.04	14.37	0.00	2.240	4.24	0.00	3.3	96.7	0.0	0.52	0.63	0.84	3.05	3.5	0.002	0.47	0.0	0.04	15.30	0.00	2.505	3.09	1.48	3.1	96.9	0.0	1.38	0.25	0.56	0.82	2.73	7006	892	5	0	2	0	0	logfile
✔	8WC3	37429	2024-11-15	2023-09-11	3.0	3.02	2.90	3.0	0.006	0.96	2.0	0.07	13.97	0.01	1.356	8.37	1.40	5.2	94.8	0.0	-1.08	0.66	0.73	2.72	3.1	0.003	0.62	0.0	0.04	16.03	0.00	2.482	4.95	2.21	4.5	95.5	0.0	0.44	0.46	0.67	0.83	2.34	8418	1119	6	0	1	0	0	logfile
✔	8WCB	37437	2024-11-14	2023-09-11	3.1	3.38	3.17	3.4	0.019	1.20	4.0	0.07	12.91	0.01	2.246	9.90	1.09	3.2	96.8	0.0	-0.88	0.59	0.67	3.20	3.4	0.003	0.61	0.0	0.04	14.42	0.00	2.373	9.36	1.77	3.3	96.6	0.1	0.24	1.40	0.55	0.71	2.76	7784	1072	6	0	1	0	0	logfile
✔	8U4R	41892	2024-11-14	2023-09-11	3.1	3.43	3.14	3.4	0.003	0.67	0.0	0.05	14.01	0.01	2.165	4.99	0.00	3.6	96.4	0.0	0.38	0.65	0.85	3.13	3.4	0.003	0.56	0.0	0.04	15.71	0.00	2.543	3.65	1.57	4.2	95.8	0.0	0.90	0.93	0.66	0.88	2.86	4107	513	4	0	1	0	0	logfile

• ← previous
• Page 60 of 419
• next →