Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8QEC	18351	2024-11-19	2023-08-31	3.3	3.50	3.30	3.5	0.004	0.63	0.0	0.08	18.85	0.00	2.107	4.26	0.10	4.0	95.9	0.1	0.19	0.64	0.80	2.63	3.5	0.004	0.55	0.0	0.04	15.73	0.00	2.324	4.37	1.11	4.1	95.8	0.1	0.97	1.13	0.60	0.79	2.72	17802	1101	6	0	12	0	8699	logfile
✔	8U1D	41810	2024-11-14	2023-08-31	4.25	4.46	4.28	4.4	0.006	1.05	0.0	0.06	13.61	0.01	2.280	9.04	0.52	7.9	91.7	0.3	-2.32	0.68	0.73	—	4.4	0.004	0.67	0.0	0.04	13.77	0.00	2.533	10.14	0.00	6.4	93.5	0.2	-1.48	1.61	0.71	0.76	—	5109	650	4	0	1	0	0	logfile
✔	8QED	18352	2024-11-19	2023-08-31	3.27	3.56	3.31	3.6	0.004	0.50	0.0	0.04	15.81	0.00	1.902	4.27	0.10	4.7	95.1	0.2	0.44	0.64	0.81	2.28	3.6	0.003	0.52	0.0	0.04	15.77	0.00	2.376	4.50	1.32	4.7	95.3	0.1	0.81	1.87	0.64	0.82	2.13	17743	1101	6	0	11	0	8712	logfile
✔	8U1C	41809	2024-11-19	2023-08-31	2.89	3.20	2.96	3.2	0.023	1.85	0.0	0.11	10.04	0.01	2.013	2.24	0.20	4.5	95.1	0.3	0.02	0.74	0.84	4.37	3.2	0.006	0.71	0.0	0.05	16.10	0.01	2.493	9.12	2.90	5.7	94.1	0.2	-1.05	0.77	0.69	0.88	4.81	18380	2348	16	0	8	0	0	logfile
✔	8QE5	18343	2024-11-16	2023-08-30	2.6	2.68	2.59	2.6	0.004	0.60	0.0	0.04	17.25	0.01	2.197	7.21	2.85	3.3	96.7	0.0	1.17	0.79	0.87	3.48	2.6	0.003	0.55	0.0	0.04	17.40	0.00	2.528	5.87	3.02	2.3	97.7	0.0	1.61	0.24	0.78	0.88	3.56	10794	1340	1	0	0	0	0	logfile
✔	8W7A	37337	2024-11-17	2023-08-30	3.77	4.13	3.88	4.1	0.007	1.37	1.0	0.07	15.09	0.01	2.261	5.54	0.00	10.7	88.4	1.0	-4.55	0.68	0.66	1.66	4.1	0.003	0.82	0.0	0.05	17.29	0.00	2.427	11.78	2.26	11.0	88.4	0.6	-3.06	0.61	0.70	0.67	1.03	13017	1586	3	0	1	0	0	logfile
✔	8W77	37336	2024-11-13	2023-08-30	3.61	4.00	3.49	3.9	0.004	0.71	0.0	0.05	10.06	0.01	2.463	0.72	0.00	0.8	99.2	0.0	2.45	0.51	0.74	3.54	3.9	0.002	0.54	0.0	0.04	10.99	0.00	2.642	2.15	3.33	1.2	98.8	0.0	3.92	0.88	0.57	0.78	2.79	1601	260	1	0	0	0	0	logfile
✔	8W7L	37340	2024-11-17	2023-08-30	3.75	4.06	3.93	4.0	0.005	1.15	4.0	0.07	15.25	0.01	2.293	7.50	0.06	13.3	85.9	0.8	-3.90	0.78	0.77	1.82	4.0	0.005	0.82	0.0	0.05	17.65	0.00	2.308	14.96	2.37	13.6	85.8	0.6	-2.38	0.61	0.80	0.80	1.79	14636	1814	6	0	2	0	0	logfile
✔	8W7M	37343	2024-11-19	2023-08-30	4.12	6.49	4.21	4.1	0.003	0.58	0.0	0.04	14.05	0.00	1.822	18.62	0.55	4.4	95.5	0.1	-0.19	0.87	0.80	—	4.1	0.003	0.63	0.0	0.04	14.28	0.00	1.870	11.80	0.00	3.8	96.2	0.0	0.62	1.16	0.88	0.84	—	51196	6394	22	8	13	0	0	logfile
✔	8W7J	37339	2024-11-17	2023-08-30	3.98	4.34	4.09	4.2	0.005	1.10	0.0	0.06	15.74	0.01	2.290	5.56	0.21	11.4	88.1	0.6	-3.79	0.77	0.73	0.53	4.2	0.003	0.72	0.0	0.04	17.63	0.00	2.475	11.84	2.55	10.9	88.7	0.4	-2.34	0.52	0.78	0.75	0.79	13437	1627	4	0	16	0	0	logfile
✔	8QDX	18342	2024-11-19	2023-08-30	3.0	3.24	—	3.2	0.006	0.88	3.0	0.06	17.77	0.00	1.888	6.19	0.17	3.9	96.0	0.1	-0.13	0.69	0.71	3.65	3.2	0.003	0.57	0.0	0.04	19.92	0.00	2.358	4.22	0.87	3.6	96.4	0.0	0.59	1.45	0.76	0.86	3.45	52721	2867	6	236	0	0	25314	logfile
✔	8U13	41800	2024-11-18	2023-08-30	3.8	4.21	3.57	3.9	0.004	0.64	0.0	0.04	27.10	0.00	1.330	13.20	0.00	2.5	97.5	0.0	0.79	0.88	0.84	1.36	3.9	0.004	0.73	0.0	0.04	27.60	0.00	2.085	13.07	3.44	4.2	95.8	0.0	0.62	0.52	0.88	0.85	1.23	12825	858	12	293	2	0	0	logfile
✔	8W6i	37324	2024-11-15	2023-08-29	3.7	4.25	3.88	4.1	0.004	1.10	0.0	0.06	13.87	0.01	2.308	5.93	0.13	5.1	94.6	0.3	-3.33	0.69	0.78	0.81	4.1	0.003	0.77	0.0	0.04	16.11	0.00	2.391	12.51	3.02	4.7	95.2	0.1	-0.54	0.51	0.70	0.79	0.76	7750	1021	6	0	2	0	0	logfile
✔	8U0J	41781	2024-11-14	2023-08-29	3.1	3.50	3.09	3.4	0.008	0.92	0.0	0.05	20.28	0.01	2.170	10.01	0.00	8.0	92.0	0.0	-1.07	0.45	0.72	3.27	3.4	0.003	0.60	0.0	0.04	21.31	0.00	2.360	9.46	1.37	6.0	94.0	0.0	0.03	0.95	0.44	0.72	2.11	5657	569	5	48	1	0	0	logfile
✔	8W6N	37329	2024-11-14	2023-08-29	3.2	3.38	3.23	3.4	0.004	0.95	0.0	0.05	13.43	0.01	2.310	3.10	0.12	7.1	92.8	0.1	-7.03	0.66	0.84	2.74	3.4	0.003	0.70	0.0	0.04	15.21	0.01	2.345	5.81	2.39	5.9	94.1	0.0	-1.48	0.48	0.66	0.85	2.28	7616	975	4	0	3	0	0	logfile
✔	8W6J	37325	2024-11-15	2023-08-29	3.4	3.85	3.59	3.8	0.006	1.25	4.0	0.06	14.81	0.01	2.303	6.61	0.46	8.0	91.6	0.4	-2.91	0.69	0.77	1.54	3.8	0.006	1.11	1.0	0.05	16.38	0.01	2.398	11.35	3.36	7.1	92.6	0.4	-0.21	0.50	0.71	0.81	1.62	8553	1127	7	0	2	0	0	logfile
✔	8U0W	41790	2024-11-15	2023-08-29	2.99	3.75	3.16	3.5	0.007	0.76	0.0	0.05	14.85	0.00	2.091	8.29	0.00	3.5	96.3	0.2	-0.58	0.83	0.83	3.50	3.5	0.003	0.59	0.0	0.04	17.03	0.00	2.458	5.34	1.03	2.5	97.3	0.2	1.68	3.72	0.78	0.84	2.56	9086	1099	2	12	0	0	0	logfile
✔	8W6T	37332	2024-11-14	2023-08-29	3.0	3.16	2.98	3.2	0.006	1.03	1.0	0.07	12.77	0.01	2.247	4.01	0.72	6.3	93.6	0.1	-5.55	0.64	0.81	2.57	3.2	0.003	0.67	0.0	0.04	15.24	0.00	2.528	5.23	1.20	5.0	95.0	0.0	-0.35	1.23	0.62	0.81	2.82	7605	975	2	0	0	0	0	logfile
✔	8U0T	41784	2024-11-14	2023-08-29	3.2	3.49	3.24	3.5	0.013	1.40	2.0	0.09	10.78	0.01	2.291	1.69	0.47	2.7	97.1	0.1	-1.05	0.70	0.79	4.40	3.5	0.004	0.65	0.0	0.04	13.70	0.00	2.432	2.77	1.71	2.1	97.9	0.0	0.75	0.59	0.72	0.85	3.16	6761	849	4	0	10	0	0	logfile
✔	8W6o	37330	2024-11-14	2023-08-29	2.9	3.07	2.91	3.1	0.005	1.04	0.0	0.05	13.10	0.01	2.246	2.60	0.13	6.6	93.0	0.5	-4.81	0.68	0.82	3.03	3.1	0.004	0.73	0.0	0.04	14.22	0.01	2.185	6.57	2.93	7.2	92.6	0.1	-0.13	0.45	0.69	0.83	2.08	7147	907	4	0	6	0	0	logfile

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