Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8W6D	37321	2024-11-15	2023-08-28	2.5	2.33	2.45	2.3	0.009	1.08	0.0	0.06	13.67	0.01	2.391	1.35	0.23	5.0	94.9	0.2	-2.77	0.67	0.86	3.20	2.3	0.003	0.63	0.0	0.04	15.40	0.01	2.334	3.89	1.14	3.8	96.2	0.0	1.71	1.16	0.67	0.86	2.77	8304	1058	4	0	6	0	0	logfile
✔	8W6H	37323	2024-11-14	2023-08-28	3.1	3.21	3.03	3.2	0.011	1.23	1.0	0.07	13.79	0.01	2.205	4.85	0.76	9.5	90.3	0.2	-7.00	0.70	0.85	2.74	3.2	0.003	0.74	0.0	0.04	14.49	0.00	2.225	4.85	2.90	5.5	94.5	0.0	-0.37	0.47	0.69	0.86	1.51	7268	923	4	0	6	0	0	logfile
✔	8U02	41776	2024-11-15	2023-08-28	3.28	4.12	3.44	3.9	0.005	0.98	0.0	0.06	10.24	0.02	2.222	8.98	0.61	2.2	97.8	0.0	0.65	0.69	0.78	2.00	3.9	0.003	0.79	0.0	0.04	14.68	0.00	2.502	11.78	2.91	2.6	97.4	0.0	1.20	1.80	0.66	0.79	1.40	7774	1013	5	0	1	0	0	logfile
✔	8TZV	41770	2024-11-14	2023-08-28	2.8	3.84	3.03	3.4	0.001	0.40	0.0	0.04	7.77	0.00	2.199	6.62	0.47	1.0	99.0	0.0	0.07	0.80	0.73	1.36	3.5	0.003	0.75	0.0	0.05	14.17	0.00	2.563	12.62	2.36	3.2	96.8	0.0	-0.07	3.16	0.82	0.76	1.55	5680	696	4	0	2	0	0	logfile
✔	8QCS	18334	2024-11-14	2023-08-28	2.9	3.25	2.95	3.2	0.003	0.57	0.0	0.04	15.23	0.00	2.301	7.00	0.00	2.7	97.3	0.0	0.62	0.56	0.82	3.12	3.2	0.003	0.61	0.0	0.04	16.36	0.00	2.544	7.15	2.55	2.9	97.1	0.0	2.41	1.20	0.53	0.79	2.15	3241	417	1	0	0	0	0	logfile
✔	8QCX	18336	2024-11-14	2023-08-28	3.1	3.36	3.25	3.4	0.003	0.50	0.0	0.04	13.43	0.01	2.275	4.35	0.00	1.0	99.0	0.0	1.06	0.57	0.81	3.18	3.4	0.003	0.56	0.0	0.04	15.79	0.00	2.635	6.44	1.13	1.0	99.0	0.0	2.92	1.21	0.53	0.79	2.32	3283	422	1	0	0	0	0	logfile
✔	8TZZ	41775	2024-11-17	2023-08-28	3.56	3.88	3.65	3.7	0.007	0.86	0.0	0.05	18.89	0.00	1.432	7.04	0.66	4.4	95.6	0.0	-0.59	0.81	0.85	2.60	3.7	0.003	0.55	0.0	0.04	18.92	0.00	1.110	7.15	0.66	3.9	96.1	0.0	0.52	0.42	0.81	0.84	1.88	14012	1336	11	144	5	5	0	logfile
✔	8QCZ	18338	2024-11-14	2023-08-28	3.1	3.56	3.09	3.4	0.004	0.63	0.0	0.04	15.35	0.00	2.259	7.43	0.00	1.9	98.1	0.0	0.21	0.49	0.81	2.57	3.4	0.003	0.61	0.0	0.04	16.50	0.00	2.482	6.24	1.99	2.2	97.8	0.0	2.27	0.37	0.50	0.80	1.84	3316	421	2	0	1	0	0	logfile
✔	8QCY	18337	2024-11-14	2023-08-28	2.9	3.36	3.07	3.3	0.004	0.58	0.0	0.04	11.88	0.00	2.245	5.86	0.00	1.4	98.6	0.0	0.40	0.55	0.78	3.99	3.3	0.003	0.64	0.0	0.04	15.55	0.00	2.550	6.91	2.27	1.9	98.1	0.0	2.18	1.25	0.48	0.73	2.90	3273	421	1	0	0	0	0	logfile
✔	8W6G	37322	2024-11-15	2023-08-28	3.3	3.59	3.21	3.6	0.008	1.06	2.0	0.06	13.36	0.01	2.313	3.18	0.00	7.3	92.7	0.0	-6.99	0.67	0.89	2.46	3.6	0.003	0.70	0.0	0.04	14.45	0.01	2.620	3.36	1.15	5.8	94.2	0.0	0.78	1.17	0.65	0.88	1.45	8314	1054	4	0	6	0	0	logfile
✔	8TZY	41774	2024-11-17	2023-08-28	3.8	4.10	3.75	4.0	0.003	0.60	0.0	0.05	15.91	0.00	1.931	8.90	0.41	12.0	88.0	0.0	-2.74	0.68	0.67	1.13	4.0	0.005	0.98	0.0	0.05	16.31	0.00	2.328	8.32	3.79	13.4	86.4	0.2	-3.01	1.17	0.68	0.67	1.11	13718	978	5	0	0	0	6598	logfile
✔	8QD0	18339	2024-11-14	2023-08-28	2.8	3.36	2.79	3.2	0.003	0.63	0.0	0.04	15.30	0.01	2.337	5.83	0.00	1.0	99.0	0.0	1.25	0.61	0.81	3.08	3.2	0.003	0.66	0.0	0.04	16.27	0.00	2.466	6.72	1.13	1.2	98.8	0.0	2.37	1.71	0.51	0.75	2.75	3290	422	2	0	1	0	0	logfile
✔	8QCR	18333	2024-11-14	2023-08-28	2.75	2.70	2.59	2.9	0.011	1.78	0.0	0.08	9.60	0.01	2.505	0.00	0.00	3.0	97.0	0.0	-1.85	0.33	0.79	7.24	2.9	0.003	0.55	0.0	0.05	15.35	0.00	2.511	3.17	1.13	1.0	99.0	0.0	-0.54	1.33	0.40	0.87	7.40	3153	204	3	0	0	0	1608	logfile
✔	8QCP	18331	2024-11-14	2023-08-28	3.21	3.22	3.18	3.3	0.011	1.86	1.0	0.09	11.52	0.01	2.543	0.00	0.00	7.5	92.5	0.0	-2.03	0.31	0.78	5.53	3.3	0.002	0.59	0.0	0.05	16.23	0.00	2.486	1.43	2.29	3.9	96.1	0.0	-2.11	0.96	0.35	0.86	5.41	7002	453	6	0	0	0	3567	logfile
✔	8W6C	37320	2024-11-15	2023-08-28	2.7	2.82	2.69	2.8	0.007	1.05	0.0	0.05	14.78	0.01	2.163	5.79	1.13	4.8	95.2	0.0	-3.18	0.68	0.86	2.60	2.8	0.003	0.66	0.0	0.04	16.07	0.01	2.317	3.92	2.83	4.2	95.8	0.0	1.77	0.40	0.68	0.87	1.87	8360	1060	6	0	10	2	0	logfile
✔	8QCT	18335	2024-11-14	2023-08-28	2.6	2.36	2.57	2.6	0.003	0.49	0.0	0.04	15.84	0.00	2.202	7.25	0.00	1.9	98.1	0.0	0.55	0.69	0.84	3.34	2.6	0.003	0.56	0.0	0.04	16.12	0.00	2.419	6.49	2.26	2.6	97.4	0.0	2.41	0.27	0.68	0.83	2.90	3259	418	2	0	1	0	0	logfile
✔	8TZK	41761	2024-11-18	2023-08-27	3.55	3.97	3.48	3.8	0.004	0.53	0.0	0.04	11.13	0.00	1.922	2.51	0.00	3.1	96.9	0.0	3.24	0.72	0.79	1.99	3.8	0.003	0.56	0.0	0.04	14.39	0.00	2.057	5.56	1.45	3.6	96.4	0.0	2.68	0.73	0.73	0.80	2.09	17077	1149	7	0	4	0	8468	logfile
✔	8TZL	41762	2024-11-19	2023-08-27	3.55	3.98	3.46	3.8	0.004	0.51	0.0	0.04	10.72	0.00	1.922	2.28	0.00	2.5	97.5	0.0	3.76	0.71	0.78	1.99	3.8	0.003	0.54	0.0	0.04	13.84	0.00	2.038	4.82	1.57	3.1	96.9	0.0	3.20	0.70	0.71	0.79	2.17	18875	1398	7	0	4	0	9042	logfile
✔	8TZo	41764	2024-11-15	2023-08-27	3.1	3.45	3.14	3.4	0.004	0.70	0.0	0.04	17.02	0.00	2.252	5.32	0.22	3.1	96.9	0.0	0.82	0.62	0.85	2.93	3.4	0.004	0.57	0.0	0.04	15.35	0.00	1.353	4.80	1.83	3.6	96.4	0.0	1.01	0.29	0.61	0.85	2.73	8737	1070	7	0	10	0	0	logfile
✔	8TZS	41768	2024-11-14	2023-08-27	3.84	4.01	3.90	4.0	0.005	0.87	0.0	0.05	15.83	0.01	2.170	9.05	0.24	3.6	96.4	0.0	0.65	0.65	0.77	1.99	4.0	0.003	0.72	0.0	0.04	16.71	0.00	2.536	9.43	5.91	4.2	95.8	0.0	1.58	0.96	0.66	0.77	1.31	3914	480	1	0	0	0	0	logfile

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