Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Q74	18203	2024-11-14	2023-08-15	3.68	4.60	3.68	4.2	0.004	1.02	0.0	0.05	14.01	0.01	1.633	20.98	0.15	15.9	83.2	0.9	-2.37	0.66	0.80	1.25	4.2	0.004	0.82	0.0	0.05	16.34	0.01	1.486	17.07	2.00	12.3	86.8	0.9	-1.26	1.04	0.67	0.81	0.62	5943	783	2	0	1	0	0	logfile
✔	8Q75	18204	2024-11-14	2023-08-15	3.2	4.13	3.25	3.8	0.006	1.56	0.0	0.05	14.77	0.01	1.828	20.97	0.62	12.3	86.1	1.6	-2.02	0.69	0.83	1.72	3.8	0.004	0.87	0.0	0.05	16.30	0.01	1.904	13.73	2.19	11.0	88.2	0.8	-0.97	0.67	0.69	0.83	1.25	5870	774	2	0	2	0	0	logfile
✔	8KF3	37197	2024-11-13	2023-08-15	3.5	2.69	2.86	3.1	0.008	0.86	0.0	0.06	13.98	0.00	2.379	5.47	0.00	9.3	90.7	0.0	-3.58	0.37	0.87	7.61	3.1	0.003	0.65	0.0	0.06	16.03	0.00	2.622	3.42	1.37	8.2	91.8	0.0	-2.21	0.31	0.40	0.87	6.81	2175	297	9	0	0	0	0	logfile
✔	8KF5	37199	2024-11-13	2023-08-15	3.4	3.42	3.08	3.6	0.009	0.83	0.0	0.08	15.44	0.00	2.343	20.58	8.00	3.1	96.9	0.0	-3.84	0.38	0.87	7.61	3.5	0.005	0.64	0.0	0.06	15.93	0.00	2.654	4.98	0.00	0.0	100.0	0.0	-0.15	0.91	0.39	0.88	8.28	1500	204	6	0	0	0	0	logfile
✔	8KF6	37200	2024-11-13	2023-08-15	3.7	3.70	3.32	3.9	0.004	0.70	0.0	0.06	14.13	0.00	2.415	19.14	0.00	17.2	82.8	0.0	-5.74	0.34	0.84	6.36	3.9	0.004	0.72	0.0	0.06	16.32	0.00	2.607	8.66	4.57	17.2	82.8	0.0	-3.67	0.93	0.36	0.85	6.53	2175	297	9	0	0	0	0	logfile
✔	8KF4	37198	2024-11-13	2023-08-15	3.0	3.12	2.82	3.2	0.010	0.77	0.0	0.07	12.82	0.00	2.605	1.00	0.00	0.0	100.0	0.0	-4.40	0.39	0.91	6.86	3.3	0.003	0.51	0.0	0.06	14.50	0.00	2.667	0.66	0.67	0.0	100.0	0.0	-1.07	1.20	0.39	0.91	7.60	1500	204	6	0	0	0	0	logfile
✔	8KFA	37203	2024-11-19	2023-08-15	3.04	3.87	3.20	3.4	0.002	0.48	0.0	0.04	13.59	0.00	2.226	9.28	0.00	2.9	97.1	0.0	-0.20	0.83	0.82	2.55	3.4	0.003	0.60	0.0	0.04	15.15	0.00	2.449	9.03	2.16	3.2	96.8	0.0	-0.42	0.37	0.84	0.84	2.42	18665	2421	9	0	0	0	0	logfile
✔	8TU9	41620	2024-11-15	2023-08-15	3.26	3.58	3.38	3.6	0.011	1.68	0.0	0.08	14.55	0.02	2.023	2.59	0.00	4.4	95.6	0.0	-0.68	0.66	0.81	2.08	3.6	0.003	0.63	0.0	0.04	15.34	0.00	2.408	3.43	2.00	3.9	96.1	0.0	0.99	0.48	0.63	0.83	2.55	8390	1066	4	0	8	0	0	logfile
✔	8TTQ	41612	2024-11-18	2023-08-14	3.27	4.16	3.37	3.6	0.002	0.40	0.0	0.04	13.16	0.00	2.082	5.04	0.00	1.5	98.5	0.0	0.58	0.74	0.77	2.13	3.6	0.003	0.53	0.0	0.04	14.04	0.00	2.459	4.53	1.08	4.5	95.5	0.0	0.28	0.95	0.75	0.79	2.67	17632	1212	2	0	0	0	8353	logfile
✔	8TTL	41610	2024-11-14	2023-08-14	2.6	2.56	2.61	2.8	0.013	2.14	8.0	0.13	13.17	0.01	2.584	0.00	1.35	7.1	92.0	0.9	-3.09	0.42	0.79	4.83	2.8	0.002	0.62	0.0	0.05	16.14	0.01	2.514	2.51	2.02	4.4	95.6	0.0	-2.30	1.51	0.37	0.87	5.35	5190	351	6	0	0	0	2607	logfile
✔	8Q6o	18191	2024-11-19	2023-08-14	3.14	3.54	3.31	3.5	0.003	0.49	0.0	0.04	13.86	0.00	2.232	4.96	0.03	2.4	97.6	0.0	0.77	0.66	0.81	2.60	3.4	0.006	0.65	0.0	0.04	15.88	0.00	2.350	6.03	1.42	3.7	96.3	0.0	0.62	0.78	0.71	0.86	2.47	51983	6454	34	0	10	0	0	logfile
✔	8Q6P	18192	2024-11-18	2023-08-14	3.53	3.92	3.77	3.9	0.002	0.48	0.0	0.04	14.14	0.00	2.234	5.07	0.11	2.4	97.6	0.0	1.50	0.55	0.78	1.46	3.9	0.003	0.66	0.0	0.04	16.89	0.00	2.489	8.04	2.42	2.9	97.1	0.0	1.15	1.68	0.53	0.79	1.25	16794	2104	12	0	5	0	0	logfile
✔	8TTF	41606	2024-11-14	2023-08-13	3.61	3.77	3.24	3.8	0.003	0.60	0.0	0.04	13.41	0.00	2.144	9.30	0.00	2.4	97.6	0.0	1.37	0.61	0.77	1.92	3.8	0.003	0.64	0.0	0.04	15.75	0.00	2.567	7.52	3.29	3.3	96.7	0.0	1.65	0.35	0.60	0.77	1.72	4763	621	3	0	0	0	0	logfile
✔	8KEW	37170	2024-11-13	2023-08-13	3.3	2.65	2.55	3.4	0.010	0.84	0.0	0.07	14.46	0.00	2.387	8.30	0.00	3.1	96.9	0.0	-3.87	0.36	0.85	5.24	3.4	0.004	0.62	0.0	0.06	16.66	0.00	2.628	2.66	0.67	0.0	100.0	0.0	-0.86	0.39	0.33	0.84	6.28	1500	204	6	0	0	0	0	logfile
✔	8TTG	41607	2024-11-14	2023-08-13	3.35	3.48	3.26	3.6	0.004	0.74	0.0	0.04	16.51	0.00	2.114	12.06	0.62	2.3	97.7	0.0	2.06	0.55	0.77	1.24	3.5	0.004	0.68	0.0	0.04	17.01	0.01	2.529	9.61	6.81	2.6	97.4	0.0	1.98	0.90	0.56	0.80	1.26	3026	389	2	0	0	0	0	logfile
✔	8KEP	37163	2024-11-14	2023-08-13	2.93	2.48	3.13	2.2	0.002	0.64	0.0	0.04	8.96	0.00	2.328	4.63	2.78	8.9	91.1	0.0	-4.25	0.71	0.73	2.41	2.2	0.004	0.84	0.0	0.05	13.89	0.00	2.471	6.73	4.45	13.1	86.9	0.0	-2.39	1.39	0.73	0.77	2.21	4834	622	3	0	0	0	0	logfile
✔	8TTE	41605	2024-11-14	2023-08-13	3.26	3.39	2.96	3.5	0.006	0.92	0.0	0.06	16.55	0.00	2.301	10.89	0.94	4.2	95.8	0.0	0.55	0.58	0.80	2.53	3.5	0.004	0.75	0.0	0.04	17.58	0.00	2.608	11.71	4.39	4.5	95.5	0.0	1.89	0.32	0.56	0.80	2.34	2991	385	2	0	0	0	0	logfile
✔	8TSi	41593	2024-11-19	2023-08-11	4.4	4.04	3.79	4.0	0.004	1.20	0.0	0.05	17.52	0.00	2.225	8.10	0.68	3.9	96.1	0.0	0.86	0.63	0.75	—	4.0	0.003	0.66	0.0	0.04	14.80	0.00	2.466	7.59	0.00	3.3	96.7	0.0	1.26	3.46	0.65	0.77	—	20248	2488	14	0	4	0	0	logfile
✔	8TSQ	41598	2024-11-15	2023-08-11	3.6	3.91	3.59	3.9	0.004	0.65	0.0	0.04	16.89	0.00	2.234	10.06	0.51	4.3	95.7	0.0	1.04	0.67	0.72	0.85	4.0	0.003	0.66	0.0	0.04	17.32	0.00	2.502	9.35	3.48	4.2	95.8	0.0	1.07	3.22	0.68	0.76	0.55	8918	1150	2	0	0	0	0	logfile
✔	8TSS	41600	2024-11-15	2023-08-11	3.7	4.10	3.81	4.1	0.004	0.75	0.0	0.04	15.89	0.01	2.244	11.94	0.41	4.5	95.5	0.1	0.31	0.67	0.72	0.82	4.1	0.003	0.68	0.0	0.04	16.60	0.00	2.484	8.18	5.32	3.8	96.2	0.0	1.17	1.60	0.66	0.74	0.86	8918	1150	2	0	0	0	0	logfile

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