Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TSQ	41598	2024-11-15	2023-08-11	3.6	3.91	3.59	3.9	0.004	0.65	0.0	0.04	16.89	0.00	2.234	10.06	0.51	4.3	95.7	0.0	1.04	0.67	0.72	0.85	4.0	0.003	0.66	0.0	0.04	17.32	0.00	2.502	9.35	3.48	4.2	95.8	0.0	1.07	3.22	0.68	0.76	0.55	8918	1150	2	0	0	0	0	logfile
✔	8KE9	37150	2024-11-14	2023-08-11	3.76	4.61	3.81	3.9	0.003	0.70	0.0	0.08	14.47	0.00	1.931	12.94	7.55	5.7	94.1	0.2	-1.09	0.74	0.78	0.99	3.9	0.004	0.72	0.0	0.04	14.35	0.00	2.493	15.83	2.21	5.7	94.1	0.2	-0.52	1.82	0.76	0.86	1.44	4929	654	3	0	0	0	0	logfile
✔	8TSP	41597	2024-11-15	2023-08-11	3.9	4.19	3.93	4.2	0.004	0.75	0.0	0.05	16.52	0.01	2.201	10.09	0.72	3.0	97.0	0.0	0.50	0.68	0.74	0.50	4.2	0.003	0.64	0.0	0.04	17.46	0.00	2.584	7.99	4.92	3.2	96.8	0.0	1.70	0.60	0.68	0.72	0.50	8888	1146	2	0	0	0	0	logfile
✔	8KEJ	37160	2024-11-15	2023-08-11	3.73	2.84	3.69	2.1	0.003	0.65	0.0	0.04	9.63	0.00	2.252	7.21	5.75	7.7	92.1	0.2	-4.21	0.63	0.56	1.45	2.2	0.003	0.74	0.0	0.05	13.86	0.01	2.461	12.19	4.05	8.4	91.6	0.0	-2.72	0.83	0.65	0.60	1.22	8377	1075	3	0	0	0	0	logfile
✔	8KEK	37161	2024-11-14	2023-08-11	3.54	2.63	3.55	2.1	0.002	0.49	0.0	0.04	9.41	0.00	2.238	9.46	6.01	10.9	89.0	0.1	-5.10	0.60	0.57	1.53	2.1	0.003	0.73	0.0	0.05	13.34	0.00	2.422	12.69	4.51	14.0	85.9	0.1	-3.08	2.50	0.62	0.59	1.86	7721	994	3	0	0	0	0	logfile
✔	8TSR	41599	2024-11-15	2023-08-11	3.9	4.25	3.96	4.2	0.005	0.83	0.0	0.05	16.02	0.01	2.219	11.20	0.51	3.2	96.8	0.0	0.80	0.71	0.76	0.88	4.2	0.003	0.77	0.0	0.04	17.18	0.00	2.543	9.71	3.69	3.3	96.7	0.0	1.63	1.21	0.70	0.76	0.88	8888	1146	2	0	0	0	0	logfile
✔	8Q6J	18188	2024-11-16	2023-08-11	3.3	4.21	3.41	3.8	0.007	0.76	0.0	0.05	15.11	0.01	2.029	19.52	5.69	9.6	90.4	0.1	-1.61	0.86	0.75	1.78	3.8	0.005	0.70	0.0	0.05	14.52	0.01	2.111	12.98	3.35	8.4	91.5	0.1	-1.34	1.31	0.87	0.78	1.32	11535	1494	8	0	9	0	0	logfile
✔	8TS6	41590	2024-11-18	2023-08-11	3.44	3.79	3.18	3.5	0.003	0.45	0.0	0.04	12.68	0.00	2.221	9.28	4.65	2.9	96.9	0.2	1.50	0.59	0.86	2.85	3.5	0.003	0.64	0.0	0.04	15.22	0.00	2.460	9.51	3.98	3.0	96.8	0.2	1.49	0.48	0.58	0.86	2.24	48444	6000	12	0	0	0	0	logfile
✔	8KDR	37143	2024-11-14	2023-08-10	3.4	2.45	3.47	2.1	0.010	1.49	8.0	0.10	18.68	0.01	2.287	10.31	26.92	17.1	79.9	3.0	-5.71	0.59	0.61	1.58	3.3	0.004	0.88	0.0	0.05	15.99	0.01	2.434	13.56	6.36	11.3	88.4	0.3	-3.43	1.52	0.63	0.70	1.91	5454	706	3	0	0	0	0	logfile
✔	8Q63	18183	2024-11-16	2023-08-10	3.68	3.75	3.69	3.8	0.007	1.03	0.0	0.09	18.50	0.00	2.121	12.49	0.09	4.5	95.5	0.0	0.60	0.74	0.73	1.25	3.8	0.003	0.69	0.0	0.04	19.58	0.00	2.478	12.03	2.72	3.7	96.3	0.0	0.61	0.45	0.74	0.73	1.37	11346	1244	6	69	1	0	0	logfile
✔	8KDT	37145	2024-11-14	2023-08-10	3.04	2.47	3.21	2.2	0.002	0.51	0.0	0.04	8.53	0.00	2.240	7.77	5.91	6.6	93.4	0.0	-4.43	0.67	0.70	1.97	2.2	0.004	0.75	0.0	0.05	13.95	0.00	2.537	11.87	4.62	11.0	89.0	0.0	-2.25	1.47	0.69	0.74	2.35	4837	625	3	0	0	0	0	logfile
✔	8TR3	41569	2024-11-18	2023-08-09	3.74	4.06	3.63	3.9	0.005	0.72	0.0	0.05	16.05	0.00	2.243	11.81	0.34	8.5	91.5	0.0	-0.94	0.79	0.80	1.34	3.9	0.004	0.73	0.0	0.05	16.42	0.00	2.499	10.67	4.07	8.0	92.0	0.0	-1.26	0.44	0.79	0.82	1.23	16401	2028	21	0	39	0	0	logfile
✔	8TRM	41583	2024-11-15	2023-08-09	2.5	2.56	2.64	2.5	0.003	0.61	0.0	0.05	18.29	0.00	1.909	2.81	1.68	1.4	98.6	0.0	1.52	0.56	0.91	4.39	2.5	0.003	0.61	0.0	0.05	18.62	0.00	1.964	3.50	2.31	1.5	98.5	0.0	2.03	0.35	0.57	0.91	3.76	8814	1113	9	0	6	30	0	logfile
✔	8TR9	41574	2024-11-14	2023-08-09	3.2	3.80	3.19	3.6	0.002	0.54	0.0	0.04	13.53	0.00	2.224	9.75	0.00	3.7	96.3	0.0	-0.43	0.85	0.88	3.75	3.6	0.003	0.56	0.0	0.04	15.02	0.00	2.481	7.34	1.01	3.7	96.3	0.0	-0.25	0.59	0.85	0.89	3.98	5442	684	2	1	0	0	0	logfile
✔	8KDC	37131	2024-11-19	2023-08-09	3.3	3.76	3.41	3.7	0.003	0.49	0.0	0.04	14.09	0.00	2.001	6.45	0.05	2.6	97.4	0.0	1.17	0.71	0.79	2.09	3.7	0.003	0.52	0.0	0.04	15.42	0.00	2.069	5.00	0.85	3.0	97.0	0.0	1.37	0.25	0.76	0.83	1.77	18808	2329	7	0	3	0	0	logfile
✔	8Q5H	18179	2024-11-15	2023-08-09	4.5	4.83	4.50	4.3	0.004	0.82	0.0	0.04	15.49	0.01	2.072	15.56	0.00	3.5	96.5	0.1	0.62	0.66	0.45	—	4.3	0.003	0.75	0.0	0.04	15.52	0.00	2.379	13.88	0.00	3.4	96.5	0.1	0.60	1.87	0.76	0.66	—	9574	1173	7	0	0	0	0	logfile
✔	8KCW	37112	2024-11-16	2023-08-08	2.77	3.13	2.73	3.1	0.005	0.82	0.0	0.05	18.78	0.01	2.126	5.92	0.18	2.8	97.2	0.0	-4.23	0.60	0.82	3.29	3.1	0.004	1.47	2.0	0.05	15.21	0.00	1.940	5.44	0.99	1.7	98.3	0.0	1.29	1.99	0.62	0.85	3.14	10484	1252	12	0	26	0	0	logfile
✔	8KCX	37113	2024-11-15	2023-08-08	2.96	3.37	2.90	3.3	0.005	0.77	0.0	0.06	20.46	0.00	2.273	4.87	0.39	1.8	98.2	0.0	-2.46	0.59	0.81	2.56	3.3	0.003	0.65	0.0	0.04	16.01	0.00	2.492	4.29	4.90	1.3	98.7	0.0	1.20	1.27	0.59	0.82	2.85	9486	1142	12	0	22	0	0	logfile
✔	8TQo	41510	2024-11-16	2023-08-08	3.1	3.83	3.25	3.7	0.002	0.54	0.0	0.04	16.86	0.00	2.202	8.77	0.16	4.5	95.5	0.0	0.14	0.76	0.83	1.75	3.7	0.003	0.58	0.0	0.04	17.04	0.00	2.496	7.38	3.74	4.4	95.6	0.0	0.55	1.02	0.71	0.80	2.59	11122	1437	4	0	0	0	0	logfile
✔	8KCC	37099	2024-11-18	2023-08-07	3.1	4.04	3.18	3.5	0.004	0.55	0.0	0.03	25.14	0.00	2.199	11.44	1.20	1.6	98.4	0.0	-0.05	0.86	0.80	1.22	3.5	0.003	0.59	0.0	0.03	26.04	0.00	2.312	10.54	1.20	2.7	97.3	0.0	2.38	0.75	0.89	0.85	1.51	16271	1270	12	300	2	0	0	logfile

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