Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TQM	41508	2024-11-14	2023-08-07	3.2	3.40	3.14	3.4	0.007	0.92	0.0	0.04	13.43	0.00	1.724	12.07	0.00	2.5	97.5	0.0	2.28	0.62	0.78	2.62	3.4	0.003	0.50	0.0	0.04	15.14	0.00	2.331	6.94	0.79	2.6	97.4	0.0	2.46	0.62	0.58	0.80	2.13	7231	843	2	0	7	0	0	logfile
✔	8KCi	37105	2024-11-15	2023-08-07	3.94	4.27	3.89	4.2	0.004	0.67	0.0	0.04	18.61	0.00	2.001	9.47	1.35	10.0	89.8	0.3	-0.20	0.63	0.70	0.56	4.2	0.003	0.68	0.0	0.04	18.57	0.00	1.992	7.81	3.00	9.6	90.4	0.0	-0.25	1.31	0.65	0.72	0.47	9515	1203	2	0	4	0	0	logfile
✔	8KCB	37098	2024-11-17	2023-08-07	3.17	4.13	3.28	3.5	0.005	0.57	0.0	0.03	26.34	0.00	2.302	8.81	0.23	1.3	98.6	0.1	-1.26	0.83	0.77	0.89	3.5	0.004	0.65	0.0	0.03	27.44	0.00	2.143	10.29	2.42	2.1	97.9	0.0	2.48	1.07	0.85	0.86	0.99	14071	1184	12	252	2	0	0	logfile
✔	8TQ1	41498	2024-11-19	2023-08-06	3.3	3.50	3.26	3.4	0.007	1.17	0.0	0.06	13.27	0.01	2.108	1.39	0.24	3.5	96.5	0.0	0.88	0.79	0.86	3.93	3.4	0.003	0.62	0.0	0.04	13.41	0.00	2.501	5.31	1.63	3.3	96.7	0.0	0.63	0.51	0.80	0.88	3.69	19788	2400	31	0	79	0	0	logfile
✔	8KC9	37097	2024-11-15	2023-08-06	3.75	4.32	3.88	4.2	0.004	0.79	0.0	0.05	18.98	0.00	2.168	10.18	1.18	4.3	95.3	0.3	0.48	0.62	0.64	1.30	4.2	0.003	0.66	0.0	0.04	18.08	0.00	2.110	6.63	2.66	4.7	95.1	0.3	0.87	1.71	0.69	0.74	1.32	9714	1196	6	0	6	0	0	logfile
✔	8KC7	37096	2024-11-17	2023-08-06	3.46	4.35	3.40	3.6	0.003	0.70	0.0	0.04	16.70	0.00	2.211	9.82	0.93	6.6	93.4	0.0	-1.18	0.84	0.79	1.58	3.7	0.006	0.74	0.0	0.04	17.17	0.00	2.525	12.87	2.55	8.9	91.1	0.0	-0.01	1.81	0.86	0.85	1.77	14326	1748	6	0	0	0	0	logfile
✔	8TPW	41495	2024-11-18	2023-08-05	3.46	4.44	3.53	3.6	0.003	0.50	0.0	0.04	14.06	0.00	2.188	7.30	1.46	4.3	95.6	0.0	1.20	0.93	0.89	1.61	3.6	0.002	0.52	0.0	0.04	14.48	0.00	2.527	4.74	1.51	3.7	96.2	0.0	1.39	0.28	0.93	0.89	1.47	17254	2290	5	0	0	0	0	logfile
✔	8KC2	37090	2024-11-14	2023-08-05	2.6	2.24	2.62	2.0	0.005	0.75	0.0	0.05	14.84	0.01	1.829	5.70	0.87	6.9	93.0	0.1	-0.90	0.79	0.81	3.58	2.0	0.004	0.66	0.0	0.04	16.81	0.00	1.947	2.53	2.18	6.7	93.3	0.0	-0.30	0.48	0.84	0.85	3.68	6471	790	4	0	5	0	0	logfile
✔	8TPX	41496	2024-11-18	2023-08-05	3.4	4.42	3.45	3.5	0.003	0.69	0.0	0.04	15.18	0.00	2.215	14.28	0.73	14.1	85.2	0.8	-1.36	0.91	0.85	1.35	3.5	0.003	0.70	0.0	0.04	15.56	0.00	2.437	9.56	2.03	13.1	86.4	0.5	-1.18	0.30	0.92	0.86	1.16	17177	2282	5	0	0	0	0	logfile
✔	8TP3	41465	2024-11-17	2023-08-04	3.6	3.91	3.62	3.9	0.020	1.72	0.0	0.11	10.55	0.01	2.336	0.86	0.07	1.7	98.3	0.0	0.78	0.72	0.73	2.35	3.9	0.003	0.68	0.0	0.04	14.85	0.00	2.501	7.84	2.84	2.4	97.6	0.0	0.33	1.47	0.72	0.73	1.91	13691	1700	14	0	20	0	0	logfile
✔	8TP5	41467	2024-11-18	2023-08-04	2.9	3.29	2.95	3.2	0.021	1.86	1.0	0.11	10.61	0.01	2.336	1.75	0.11	1.8	98.2	0.0	1.07	0.76	0.79	3.53	3.2	0.003	0.65	0.0	0.04	15.22	0.00	2.475	6.25	2.07	2.8	97.2	0.0	0.63	1.24	0.78	0.85	3.48	17508	2205	18	0	18	0	0	logfile
✔	8TPN	41478	2024-11-15	2023-08-04	4.07	4.04	4.01	4.0	0.002	0.46	0.0	0.04	15.10	0.00	2.220	5.18	0.00	2.8	97.2	0.0	2.66	0.74	0.81	—	4.0	0.004	0.57	0.0	0.04	15.07	0.00	2.222	3.77	0.00	2.5	97.5	0.0	1.98	0.35	0.75	0.82	—	8612	1102	4	0	4	0	0	logfile
✔	8KBY	37087	2024-11-14	2023-08-04	3.23	3.45	3.19	3.5	0.003	0.91	0.0	0.05	14.41	0.00	2.288	12.26	0.00	12.2	87.4	0.4	-4.87	0.50	0.47	2.38	3.4	0.005	1.28	1.0	0.05	15.82	0.01	2.428	9.74	6.58	18.9	80.9	0.1	-5.16	1.75	0.57	0.62	2.75	5050	830	1	0	0	0	0	logfile
✔	8TP4	41466	2024-11-17	2023-08-04	3.3	3.25	3.26	3.4	0.020	1.77	7.0	0.10	10.27	0.02	2.221	2.95	0.00	2.6	97.4	0.0	0.69	0.79	0.84	3.98	3.3	0.006	0.70	0.0	0.05	14.61	0.00	2.458	5.04	2.19	3.6	96.3	0.1	0.11	0.72	0.80	0.87	2.96	13472	1678	11	0	18	0	0	logfile
✔	8TP7	41469	2024-11-18	2023-08-04	2.8	3.07	2.89	3.1	0.021	1.80	0.0	0.10	10.25	0.01	1.987	1.53	0.00	1.7	98.3	0.0	0.83	0.76	0.85	4.78	3.1	0.004	0.61	0.0	0.04	14.99	0.00	2.456	4.27	2.58	2.2	97.8	0.0	0.51	1.35	0.70	0.84	3.90	17010	2145	15	0	18	0	0	logfile
✔	8TP6	41468	2024-11-18	2023-08-04	3.1	3.47	3.28	3.4	0.021	1.77	3.0	0.11	11.87	0.01	2.326	2.28	0.00	1.2	98.8	0.0	1.02	0.74	0.80	3.71	3.4	0.005	0.86	1.0	0.05	14.34	0.00	2.319	8.21	1.45	3.0	97.0	0.0	0.18	1.80	0.71	0.80	2.87	17008	2126	18	0	27	0	0	logfile
✔	8TPP	41480	2024-11-15	2023-08-04	3.64	3.68	3.65	3.8	0.003	0.53	0.0	0.04	16.55	0.00	2.227	6.28	0.11	2.5	97.5	0.0	2.18	0.76	0.81	1.00	3.8	0.002	0.54	0.0	0.04	17.18	0.00	2.340	4.39	3.46	2.8	97.2	0.0	2.49	0.29	0.77	0.81	1.05	9116	1168	4	0	4	0	0	logfile
✔	8TP9	41470	2024-11-18	2023-08-04	3.1	3.33	3.17	3.4	0.020	1.82	7.0	0.11	10.91	0.01	2.334	2.44	0.00	1.9	98.1	0.0	0.64	0.71	0.76	3.47	3.4	0.004	0.70	0.0	0.04	15.15	0.00	2.542	8.35	2.20	4.1	95.9	0.0	-0.76	1.81	0.71	0.80	3.42	17118	2142	15	0	15	0	0	logfile
✔	8TPA	41471	2024-11-18	2023-08-04	3.0	3.16	3.09	3.2	0.022	1.81	0.0	0.11	10.43	0.01	2.017	1.47	0.00	1.3	98.7	0.0	1.11	0.73	0.82	4.65	3.2	0.003	0.68	0.0	0.05	15.21	0.00	2.519	7.98	2.56	2.2	97.8	0.0	0.19	1.35	0.73	0.84	3.18	17286	2154	18	0	18	0	0	logfile
✔	8KBX	37086	2024-11-14	2023-08-04	3.23	3.45	3.22	3.4	0.005	1.10	0.0	0.06	13.38	0.01	1.571	9.65	0.00	9.3	90.2	0.4	-3.61	0.49	0.34	2.38	3.4	0.004	0.85	0.0	0.05	14.24	0.00	2.567	8.24	8.22	16.9	83.1	0.0	-4.40	1.83	0.58	0.58	2.75	6827	1190	2	0	0	0	0	logfile

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