Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TLT	41372	2024-11-19	2023-07-27	2.85	3.16	2.98	3.1	0.005	0.67	0.0	0.74	17.33	0.00	2.216	4.11	0.54	4.6	95.4	0.0	0.75	0.70	0.81	3.25	3.1	0.007	1.26	0.0	0.24	17.51	0.00	2.193	4.22	2.02	4.5	95.5	0.0	0.46	1.10	0.71	0.83	3.24	18644	2387	16	26	3	437	0	logfile
✔	8TLQ	41371	2024-11-19	2023-07-27	3.53	3.90	3.69	3.8	0.004	0.63	0.0	0.72	17.38	0.00	2.253	3.95	0.13	4.0	96.0	0.0	1.03	0.79	0.81	1.92	3.8	0.007	1.24	0.0	0.23	17.80	0.00	2.224	5.12	2.91	5.6	94.4	0.0	0.36	1.11	0.81	0.84	2.15	19219	2520	14	26	3	43	0	logfile
✔	8PZ2	18035	2024-11-17	2023-07-26	4.2	3.68	4.11	3.8	0.006	0.70	0.0	0.05	14.68	0.00	2.090	11.85	0.07	8.9	91.1	0.0	-1.00	0.73	0.83	—	3.8	0.003	0.60	0.0	0.04	14.56	0.00	2.509	7.28	0.14	6.5	93.5	0.0	-0.59	0.79	0.73	0.83	—	13121	1678	6	0	0	0	0	logfile
✔	8K7A	36936	2024-11-15	2023-07-26	4.2	6.79	4.47	6.7	0.007	1.46	2.0	0.07	14.73	0.01	1.638	7.00	0.30	6.0	93.3	0.7	-3.62	0.70	0.75	—	6.7	0.003	0.75	0.0	0.04	14.00	0.00	1.931	11.74	0.00	4.5	95.2	0.3	-0.06	0.56	0.71	0.81	—	8918	1126	4	0	4	0	0	logfile
✔	8TL5	41362	2024-11-19	2023-07-26	3.3	3.46	3.26	3.5	0.004	0.66	0.0	0.05	16.59	0.00	2.153	1.61	0.14	2.0	98.0	0.0	0.57	0.64	0.81	2.15	3.4	0.003	0.59	0.0	0.04	14.90	0.00	2.407	2.53	2.98	3.3	96.7	0.0	0.36	0.99	0.70	0.87	2.74	19830	2397	45	0	87	0	0	logfile
✔	8PZ1	18034	2024-11-17	2023-07-26	4.1	3.55	3.95	3.6	0.029	0.59	0.0	0.04	14.13	0.00	2.194	9.71	0.20	5.8	94.1	0.1	-0.57	0.69	0.80	—	3.6	0.003	0.58	0.0	0.04	14.45	0.00	2.474	7.55	0.00	5.5	94.5	0.0	-0.51	0.31	0.69	0.80	—	13849	1776	6	0	0	0	0	logfile
✔	8TL4	41361	2024-11-19	2023-07-26	3.2	3.35	3.17	3.3	0.004	0.64	0.0	0.05	16.04	0.00	2.030	1.65	0.09	2.5	97.5	0.0	0.17	0.70	0.86	2.45	3.3	0.003	0.57	0.0	0.04	15.01	0.00	2.422	2.51	3.07	2.7	97.3	0.0	0.05	0.92	0.69	0.87	2.56	20055	2418	42	0	81	0	0	logfile
✔	8TL2	41359	2024-11-19	2023-07-26	3.2	3.44	3.23	3.4	0.005	0.73	0.0	0.05	16.90	0.00	2.072	2.22	0.26	2.4	97.6	0.0	0.18	0.71	0.86	2.90	3.4	0.003	0.59	0.0	0.04	14.75	0.00	2.530	2.08	2.29	3.0	96.9	0.0	0.06	0.92	0.70	0.88	2.86	18323	2187	43	0	87	0	0	logfile
✔	8TL3	41360	2024-11-19	2023-07-26	3.1	3.24	3.06	3.2	0.004	0.62	0.0	0.05	15.47	0.00	2.049	1.87	0.19	2.0	97.9	0.0	0.58	0.71	0.81	2.83	3.2	0.003	0.60	0.0	0.04	14.60	0.00	2.448	1.97	1.93	2.4	97.5	0.1	0.15	0.92	0.69	0.89	3.22	20070	2421	42	0	81	0	0	logfile
✔	8PS8	17846	2024-11-19	2023-07-26	4.0	3.56	3.98	3.2	0.016	2.11	0.0	0.08	6.12	0.01	2.328	1.40	0.00	6.7	93.1	0.2	-2.93	0.69	0.76	—	3.2	0.003	0.63	0.0	0.04	4.23	0.00	2.532	1.62	0.00	6.9	93.1	0.0	0.14	0.65	0.67	0.78	—	18674	3788	3	0	0	0	0	logfile
✔	8K7C	36938	2024-11-15	2023-07-26	3.9	4.56	4.09	4.5	0.009	0.96	0.0	0.05	13.87	0.01	1.837	13.49	0.21	8.8	91.2	0.0	-1.19	0.66	0.84	2.01	4.5	0.003	0.63	0.0	0.04	16.50	0.00	1.931	5.91	2.36	4.9	95.1	0.0	0.62	0.45	0.61	0.80	1.53	9271	1174	4	0	6	0	0	logfile
✔	8K6K	36921	2024-11-15	2023-07-25	2.4	3.06	2.44	2.9	0.031	1.35	0.0	0.48	17.79	0.01	2.147	7.53	2.15	4.1	95.9	0.0	0.87	0.76	0.90	4.69	2.9	0.004	1.08	0.0	0.06	17.50	0.00	1.802	6.59	1.02	4.2	95.8	0.0	0.95	0.23	0.76	0.90	4.63	8593	1088	5	0	6	0	0	logfile
✔	8K6L	36922	2024-11-14	2023-07-25	2.92	3.27	2.96	3.2	0.005	1.00	1.0	0.09	17.75	0.02	2.297	6.71	2.17	5.0	95.0	0.0	-2.44	0.63	0.80	2.79	3.2	0.003	0.63	0.0	0.05	15.28	0.00	2.555	2.44	2.89	3.3	96.7	0.0	1.46	0.59	0.61	0.82	3.26	4155	547	3	0	4	0	0	logfile
✔	8TKo	41355	2024-11-17	2023-07-25	3.05	3.87	3.11	3.5	0.002	0.48	0.0	0.04	14.07	0.00	2.204	6.16	1.25	4.7	95.3	0.1	0.81	0.88	0.86	2.50	3.5	0.003	0.52	0.0	0.04	14.45	0.00	2.616	4.85	1.53	5.2	94.8	0.1	1.01	3.79	0.89	0.88	2.65	14282	1903	3	0	0	0	0	logfile
✔	8TKC	41346	2024-11-19	2023-07-25	3.1	3.33	3.13	3.3	0.011	0.95	1.0	0.05	16.99	0.00	2.134	1.57	0.33	2.6	97.3	0.1	0.00	0.66	0.85	2.69	3.3	0.009	0.94	2.0	0.05	16.51	0.01	2.356	1.85	1.32	3.4	96.5	0.1	-0.15	0.17	0.68	0.88	2.97	20064	2421	45	0	87	0	0	logfile
✔	8K6o	36925	2024-11-15	2023-07-25	3.3	2.34	3.29	3.2	0.002	0.58	0.0	0.04	12.87	0.00	2.255	6.19	0.10	1.8	98.2	0.0	2.01	0.72	0.65	2.18	2.2	0.003	0.63	0.0	0.04	15.83	0.00	2.527	6.62	1.66	2.7	97.3	0.0	1.57	0.74	0.75	0.76	2.25	9333	1183	6	0	0	0	0	logfile
✔	8TKP	41356	2024-11-17	2023-07-25	2.9	3.69	3.00	3.2	0.005	0.91	3.0	0.05	16.84	0.01	1.152	7.90	0.94	2.1	97.9	0.0	2.30	0.59	0.61	2.02	3.3	0.003	0.76	0.0	0.04	15.78	0.00	2.217	8.04	1.47	2.0	98.0	0.0	1.88	2.00	0.64	0.82	1.63	14666	1698	14	0	54	0	0	logfile
✔	8K6J	36920	2024-11-15	2023-07-25	2.77	3.51	2.84	3.3	0.030	1.26	0.0	0.49	17.76	0.01	2.130	8.32	2.49	4.1	95.9	0.0	0.88	0.76	0.86	3.44	3.3	0.005	1.09	0.0	0.06	17.36	0.00	1.792	6.89	1.93	4.5	95.5	0.0	0.76	0.27	0.75	0.85	3.53	8580	1087	5	0	6	0	0	logfile
✔	8TKQ	41357	2024-11-18	2023-07-25	2.5	2.25	2.47	2.0	0.007	0.66	0.0	0.04	13.51	0.00	2.166	6.40	0.00	1.9	98.1	0.0	-1.02	0.78	0.80	4.01	2.0	0.004	0.53	0.0	0.04	16.27	0.00	2.472	4.54	2.02	0.9	99.1	0.0	1.99	0.92	0.81	0.83	2.99	15950	2024	11	0	0	0	0	logfile
✔	8K66	36918	2024-11-14	2023-07-25	2.53	2.66	2.51	2.7	0.006	1.05	0.0	0.20	19.61	0.00	1.997	8.02	3.20	1.6	98.4	0.0	-0.42	0.77	0.89	4.68	2.7	0.002	0.52	0.0	0.04	15.62	0.00	2.275	5.37	1.15	2.2	97.8	0.0	2.63	1.15	0.71	0.89	4.97	7620	886	6	0	16	130	0	logfile

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