Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TKQ	41357	2024-11-18	2023-07-25	2.5	2.25	2.47	2.0	0.007	0.66	0.0	0.04	13.51	0.00	2.166	6.40	0.00	1.9	98.1	0.0	-1.02	0.78	0.80	4.01	2.0	0.004	0.53	0.0	0.04	16.27	0.00	2.472	4.54	2.02	0.9	99.1	0.0	1.99	0.92	0.81	0.83	2.99	15950	2024	11	0	0	0	0	logfile
✔	8K6J	36920	2024-11-15	2023-07-25	2.77	3.51	2.84	3.3	0.030	1.26	0.0	0.49	17.76	0.01	2.130	8.32	2.49	4.1	95.9	0.0	0.88	0.76	0.86	3.44	3.3	0.005	1.09	0.0	0.06	17.36	0.00	1.792	6.89	1.93	4.5	95.5	0.0	0.76	0.27	0.75	0.85	3.53	8580	1087	5	0	6	0	0	logfile
✔	8TJU	41311	2024-11-15	2023-07-24	3.46	4.75	3.48	3.4	0.006	0.67	0.0	0.04	25.59	0.01	1.874	27.33	0.00	0.0	0.0	0.0	—	0.93	0.86	—	3.4	0.008	0.71	0.0	0.04	24.74	0.01	1.794	24.14	0.00	0.0	0.0	0.0	—	0.40	0.94	0.91	—	8771	0	2	409	27	0	0	logfile
✔	8TJQ	41308	2024-11-15	2023-07-24	3.4	4.09	3.45	3.4	0.005	0.63	0.0	0.03	24.84	0.00	1.883	19.77	0.00	0.0	0.0	0.0	—	0.90	0.85	—	3.4	0.009	0.77	0.0	0.04	24.60	0.01	1.823	21.49	0.00	0.0	0.0	0.0	—	0.18	0.92	0.90	—	9296	0	2	433	28	0	0	logfile
✔	8TJX	41313	2024-11-15	2023-07-24	2.44	3.10	2.65	2.9	0.006	0.64	0.0	0.04	24.81	0.01	1.872	12.24	0.00	0.0	0.0	0.0	—	0.85	0.85	—	2.9	0.007	0.62	0.0	0.04	24.02	0.01	1.836	9.60	0.00	0.0	0.0	0.0	—	0.82	0.84	0.86	—	7839	0	2	365	27	0	0	logfile
✔	8TJV	41312	2024-11-15	2023-07-24	2.99	3.53	2.99	3.1	0.006	0.61	0.0	0.04	24.19	0.00	1.526	10.47	0.00	0.0	0.0	0.0	—	0.91	0.89	—	3.1	0.008	0.70	0.0	0.04	23.56	0.01	1.106	11.00	0.00	0.0	0.0	0.0	—	0.91	0.92	0.92	—	8778	0	2	409	32	0	0	logfile
✔	8PXB	18002	2024-11-15	2023-07-23	3.6	4.63	3.71	4.2	0.002	0.45	0.0	0.04	9.09	0.00	2.259	7.28	0.46	3.6	96.4	0.0	2.65	0.54	0.61	-0.50	4.2	0.004	0.98	0.0	0.05	14.11	0.00	2.405	18.57	1.74	6.1	93.9	0.0	0.37	1.46	0.55	0.73	-0.89	8102	1018	2	0	0	0	0	logfile
✔	8TJP	41307	2024-11-17	2023-07-23	3.71	4.71	3.82	4.0	0.003	0.60	0.0	0.04	13.18	0.00	2.161	4.65	0.73	3.0	96.9	0.1	0.65	0.90	0.83	2.10	4.1	0.002	0.60	0.0	0.04	13.45	0.00	2.588	3.97	0.88	2.2	97.7	0.1	1.81	0.47	0.93	0.88	1.75	13464	1792	2	0	0	0	0	logfile
✔	8K5B	36900	2024-11-13	2023-07-21	3.43	3.67	3.31	3.6	0.004	0.72	0.0	0.05	17.22	0.00	2.213	12.54	1.18	5.5	94.5	0.0	0.37	0.48	0.77	1.68	3.6	0.003	0.73	0.0	0.05	17.80	0.00	2.268	12.96	8.27	5.5	94.5	0.0	0.67	0.29	0.48	0.78	2.05	2374	291	2	0	1	0	0	logfile
✔	8K5G	36905	2024-11-14	2023-07-21	3.41	3.86	3.38	3.7	0.003	0.65	0.0	0.04	13.67	0.00	2.235	6.18	0.00	8.0	91.8	0.2	-2.07	0.68	0.85	2.82	3.7	0.003	0.72	0.0	0.04	15.77	0.00	2.489	4.82	3.54	8.0	91.8	0.2	-1.69	1.98	0.64	0.86	2.66	3381	431	3	0	0	0	0	logfile
✔	8K5D	36902	2024-11-13	2023-07-21	3.74	3.93	3.66	3.9	0.007	0.76	0.0	0.04	19.08	0.00	2.203	11.34	0.40	5.9	94.1	0.0	0.46	0.52	0.79	2.10	3.9	0.003	0.65	0.0	0.04	19.35	0.00	2.494	8.99	5.26	4.8	95.2	0.0	0.64	0.26	0.52	0.79	2.12	2345	291	2	0	1	0	0	logfile
✔	8PWL	17994	2024-11-16	2023-07-20	4.73	5.25	4.85	4.8	0.002	0.51	0.0	0.04	13.55	0.00	2.250	5.28	0.00	2.0	98.0	0.0	-0.12	0.83	0.64	—	4.8	0.003	0.62	0.0	0.04	13.90	0.00	2.456	10.20	0.00	3.1	96.9	0.0	0.40	0.44	0.87	0.81	—	12266	1541	2	0	0	0	0	logfile
✔	8TJ3	41299	2024-11-17	2023-07-20	3.2	3.62	—	3.4	0.004	0.72	0.0	0.04	13.85	0.02	2.416	10.13	1.16	7.4	92.4	0.1	0.15	0.73	0.58	0.54	3.4	0.004	0.65	0.0	0.04	15.58	0.00	2.307	13.64	1.30	7.6	92.3	0.1	0.18	1.86	0.80	0.77	1.70	13127	833	2	0	0	0	6652	logfile
✔	8K4o	36888	2024-11-15	2023-07-20	3.01	3.44	3.13	3.4	0.003	0.59	0.0	0.04	17.48	0.00	2.169	7.42	6.21	7.5	92.5	0.0	-1.17	0.64	0.87	2.22	3.4	0.003	0.58	0.0	0.04	17.41	0.00	2.409	4.09	4.49	7.4	92.6	0.0	-0.56	0.93	0.62	0.86	2.01	7946	1015	5	0	0	0	0	logfile
✔	8K4U	36892	2024-11-14	2023-07-20	3.2	3.44	3.24	3.4	0.003	0.64	0.0	0.04	11.92	0.01	2.101	3.72	4.92	3.1	96.9	0.0	-4.11	0.71	0.78	3.40	3.4	0.005	1.10	1.0	0.05	15.26	0.00	2.203	9.87	3.76	3.4	96.6	0.0	-0.50	1.18	0.73	0.81	2.64	6323	778	3	0	1	0	0	logfile
✔	8TJ2	41298	2024-11-19	2023-07-20	3.0	3.23	3.05	3.2	0.006	0.79	0.0	0.05	13.71	0.01	1.823	8.53	1.67	3.5	96.5	0.0	-1.17	0.63	0.84	3.97	3.2	0.004	0.67	0.0	0.04	14.91	0.00	2.244	5.25	2.07	5.2	94.8	0.0	-0.86	0.47	0.62	0.84	3.44	54252	3744	18	0	0	0	26460	logfile
✔	8PWH	17993	2024-11-16	2023-07-20	3.17	3.98	—	3.7	0.004	0.64	0.0	0.05	14.69	0.00	2.087	15.50	4.29	7.5	92.4	0.1	-1.53	0.84	0.76	2.00	3.7	0.004	0.70	0.0	0.05	14.25	0.01	2.325	10.86	3.27	6.9	93.1	0.1	-1.33	0.57	0.84	0.77	1.60	11535	1494	8	0	9	0	0	logfile
✔	8K4P	36889	2024-11-14	2023-07-20	2.81	3.21	2.94	3.2	0.003	0.58	0.0	0.04	17.49	0.00	2.120	6.56	2.53	3.5	96.5	0.0	0.06	0.63	0.87	2.55	3.2	0.003	0.54	0.0	0.04	17.45	0.00	2.580	4.14	3.42	3.6	96.4	0.0	0.85	0.37	0.63	0.87	2.61	7231	918	4	0	0	0	0	logfile
✔	8Ti9	41282	2024-11-17	2023-07-19	3.19	3.85	3.24	3.6	0.002	0.37	0.0	0.04	9.32	0.00	2.202	6.89	1.27	1.6	98.4	0.0	2.31	0.81	0.78	2.22	3.7	0.003	0.61	0.0	0.04	14.98	0.00	2.497	10.48	2.47	1.8	98.2	0.0	1.61	1.22	0.82	0.78	1.60	12492	1550	8	0	0	0	0	logfile
✔	8Ti8	41281	2024-11-15	2023-07-19	2.9	3.56	2.95	3.4	0.003	0.46	0.0	0.04	8.83	0.00	2.277	1.89	0.66	1.7	98.3	0.0	2.48	0.88	0.91	2.40	3.4	0.005	0.54	0.0	0.04	12.93	0.00	2.441	2.40	0.44	2.1	97.9	0.0	2.32	0.50	0.86	0.89	2.51	7887	976	4	0	0	0	0	logfile

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