Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Ti8	41281	2024-11-15	2023-07-19	2.9	3.56	2.95	3.4	0.003	0.46	0.0	0.04	8.83	0.00	2.277	1.89	0.66	1.7	98.3	0.0	2.48	0.88	0.91	2.40	3.4	0.005	0.54	0.0	0.04	12.93	0.00	2.441	2.40	0.44	2.1	97.9	0.0	2.32	0.50	0.86	0.89	2.51	7887	976	4	0	0	0	0	logfile
✔	8Ti9	41282	2024-11-17	2023-07-19	3.19	3.85	3.24	3.6	0.002	0.37	0.0	0.04	9.32	0.00	2.202	6.89	1.27	1.6	98.4	0.0	2.31	0.81	0.78	2.22	3.7	0.003	0.61	0.0	0.04	14.98	0.00	2.497	10.48	2.47	1.8	98.2	0.0	1.61	1.22	0.82	0.78	1.60	12492	1550	8	0	0	0	0	logfile
✔	8PVU	17972	2024-11-16	2023-07-18	3.5	2.55	3.71	2.2	0.005	0.71	0.0	0.05	18.07	0.00	2.234	7.71	2.09	3.8	96.2	0.0	-0.08	0.73	0.77	1.92	2.2	0.003	0.59	0.0	0.04	18.47	0.00	2.337	6.50	4.41	3.7	96.3	0.0	0.18	0.37	0.72	0.77	1.93	12336	1558	5	0	0	0	0	logfile
✔	8THZ	41275	2024-11-17	2023-07-18	3.25	3.52	3.26	3.4	0.004	0.74	0.0	0.05	25.91	0.00	1.898	7.63	0.54	10.1	89.9	0.0	-1.37	0.75	0.75	2.44	3.4	0.003	0.70	0.0	0.05	17.19	0.00	2.284	5.78	2.58	9.4	90.3	0.2	-1.23	1.21	0.74	0.75	2.60	13321	889	10	0	15	0	6400	logfile
✔	8PVX	17979	2024-11-18	2023-07-18	3.55	4.27	3.13	3.6	0.003	0.79	0.0	0.05	13.29	0.01	1.951	4.68	0.00	4.0	96.0	0.0	-0.31	0.78	0.87	3.04	3.7	0.003	0.64	0.0	0.04	14.34	0.00	1.975	6.04	0.31	2.4	97.6	0.0	1.45	1.30	0.78	0.87	2.37	15140	1920	15	0	10	0	0	logfile
✔	8THU	41272	2024-11-16	2023-07-18	3.1	3.86	3.08	3.2	0.004	0.68	0.0	0.04	28.56	0.01	1.528	5.35	0.00	2.2	97.8	0.0	1.40	0.93	0.89	2.77	3.2	0.004	0.56	0.0	0.03	28.38	0.00	2.491	7.27	1.46	2.4	97.6	0.0	2.76	0.27	0.94	0.90	1.98	11902	760	10	291	0	0	0	logfile
✔	8PVV	17973	2024-11-14	2023-07-18	2.81	3.06	2.84	3.0	0.004	0.63	0.0	0.05	18.01	0.01	1.707	10.54	0.33	2.6	97.4	0.0	0.55	0.79	0.81	3.73	3.0	0.003	0.57	0.0	0.04	19.04	0.00	1.977	11.10	1.65	2.5	97.5	0.0	0.97	1.17	0.80	0.81	2.83	6477	656	9	50	1	36	0	logfile
✔	8PUW	17949	2024-11-16	2023-07-17	3.01	3.27	3.01	3.2	0.004	0.69	0.0	0.04	12.23	0.01	2.276	3.16	0.00	1.6	98.4	0.0	0.73	0.85	0.88	3.21	3.2	0.004	0.53	0.0	0.04	13.20	0.00	2.521	4.37	0.92	1.5	98.5	0.0	2.10	0.25	0.86	0.90	2.87	11160	1442	4	0	0	0	0	logfile
✔	8PVH	17966	2024-11-18	2023-07-17	2.9	2.53	2.93	3.0	0.010	1.69	0.0	0.08	15.36	0.01	2.437	0.56	1.49	2.0	97.8	0.2	-1.08	0.53	0.78	4.67	2.9	0.003	0.57	0.0	0.04	17.61	0.00	2.582	6.27	2.61	2.4	97.6	0.0	1.31	0.59	0.68	0.84	4.09	15172	1972	8	0	4	0	0	logfile
✔	8K3T	36859	2024-11-15	2023-07-17	3.57	4.21	3.75	4.1	0.009	0.93	0.0	0.05	15.00	0.00	2.225	12.40	1.12	4.5	95.5	0.0	0.41	0.60	0.77	1.00	4.1	0.005	0.64	0.0	0.04	15.88	0.00	2.059	8.86	2.01	3.7	96.3	0.0	1.66	1.19	0.59	0.77	0.57	9410	1254	4	2	6	0	0	logfile
✔	8K4B	36882	2024-11-15	2023-07-17	3.9	4.47	4.31	4.4	0.007	1.40	0.0	0.07	15.60	0.01	2.010	8.38	0.91	7.0	92.8	0.2	-3.82	0.66	0.75	1.21	4.4	0.003	0.83	0.0	0.04	16.85	0.00	2.000	10.69	3.33	6.5	93.5	0.0	-0.72	1.80	0.68	0.79	1.25	8918	1126	4	0	4	0	0	logfile
✔	8K3X	36864	2024-11-16	2023-07-17	2.86	3.04	2.99	3.1	0.012	0.94	0.0	0.06	12.85	0.01	2.196	4.37	0.20	5.2	94.8	0.0	-0.82	0.56	0.78	2.78	3.1	0.002	0.51	0.0	0.04	15.11	0.00	2.431	3.47	2.19	2.4	97.6	0.0	1.80	1.22	0.59	0.82	2.56	10386	1386	4	0	2	0	0	logfile
✔	8K44	36872	2024-11-14	2023-07-17	3.8	4.00	3.81	3.9	0.003	0.53	0.0	0.04	10.43	0.00	2.227	14.98	0.41	1.8	98.2	0.0	0.62	0.65	0.80	2.30	3.9	0.003	0.76	0.0	0.04	14.51	0.00	2.491	11.95	5.65	1.7	98.3	0.0	-0.01	0.64	0.66	0.81	1.86	6360	840	3	0	0	0	0	logfile
✔	8K3U	36861	2024-11-15	2023-07-17	3.06	3.51	3.21	3.5	0.009	1.07	0.0	0.06	16.05	0.00	2.072	18.03	0.73	5.9	94.0	0.2	-1.45	0.55	0.67	2.06	3.5	0.003	0.57	0.0	0.04	15.87	0.00	2.122	8.22	2.31	2.4	97.4	0.2	0.86	1.61	0.49	0.65	1.57	8914	1194	4	2	8	0	0	logfile
✔	8PVB	17960	2024-11-19	2023-07-17	3.6	3.05	3.14	3.2	0.010	1.70	0.0	0.09	16.05	0.01	0.000	1.17	1.27	1.6	98.4	0.0	-0.14	0.60	0.79	4.63	3.2	0.002	0.56	0.0	0.04	14.83	0.00	0.000	4.69	1.37	0.8	99.2	0.0	1.21	0.99	0.72	0.83	3.89	19225	2275	25	0	80	0	0	logfile
✔	8PVF	17964	2024-11-16	2023-07-17	2.9	2.56	2.92	3.1	0.010	1.80	4.0	0.09	14.89	0.01	2.413	0.60	1.12	4.2	95.5	0.3	-1.16	0.54	0.80	4.62	3.1	0.003	0.56	0.0	0.05	16.67	0.00	2.630	5.55	2.32	2.3	97.4	0.3	0.25	1.94	0.68	0.87	5.01	10140	1348	8	0	4	0	0	logfile
✔	8K3W	36863	2024-11-16	2023-07-17	2.91	3.20	3.02	3.2	0.009	1.12	0.0	0.07	17.13	0.01	2.285	10.08	2.89	3.7	96.3	0.0	-0.02	0.57	0.73	2.43	3.3	0.003	0.54	0.0	0.04	16.97	0.00	2.541	5.50	3.79	2.8	97.2	0.0	2.16	0.68	0.58	0.77	2.72	10916	1388	4	0	6	0	0	logfile
✔	8PVD	17962	2024-11-18	2023-07-17	3.4	3.20	3.34	3.4	0.012	1.85	4.0	0.09	15.25	0.01	2.473	0.43	1.39	3.8	96.0	0.2	-1.14	0.68	0.79	4.47	3.3	0.003	0.60	0.0	0.04	16.48	0.00	2.471	4.41	1.74	3.5	96.5	0.0	0.79	1.01	0.83	0.87	4.30	16512	2008	8	0	8	0	0	logfile
✔	8K3Z	36869	2024-11-15	2023-07-17	2.81	2.96	2.75	2.9	0.003	0.62	0.0	0.04	17.24	0.00	2.284	7.59	3.48	4.3	95.7	0.0	0.05	0.63	0.87	3.75	2.9	0.003	0.57	0.0	0.04	17.07	0.00	2.512	4.11	2.32	4.1	95.9	0.0	0.55	0.90	0.69	0.90	3.54	9536	1217	6	0	0	0	0	logfile
✔	8K3V	36862	2024-11-16	2023-07-17	3.1	3.38	3.15	3.3	0.008	1.07	2.0	0.07	17.59	0.01	2.227	8.20	4.91	5.4	94.6	0.0	-0.31	0.65	0.81	3.01	3.3	0.003	0.52	0.0	0.04	15.66	0.00	2.527	4.39	1.35	2.9	97.1	0.0	1.82	0.51	0.65	0.83	2.91	11248	1400	4	0	6	0	0	logfile

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