Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8PVH	17966	2024-11-18	2023-07-17	2.9	2.53	2.93	3.0	0.010	1.69	0.0	0.08	15.36	0.01	2.437	0.56	1.49	2.0	97.8	0.2	-1.08	0.53	0.78	4.67	2.9	0.003	0.57	0.0	0.04	17.61	0.00	2.582	6.27	2.61	2.4	97.6	0.0	1.31	0.59	0.68	0.84	4.09	15172	1972	8	0	4	0	0	logfile
✔	8K3U	36861	2024-11-15	2023-07-17	3.06	3.51	3.21	3.5	0.009	1.07	0.0	0.06	16.05	0.00	2.072	18.03	0.73	5.9	94.0	0.2	-1.45	0.55	0.67	2.06	3.5	0.003	0.57	0.0	0.04	15.87	0.00	2.122	8.22	2.31	2.4	97.4	0.2	0.86	1.61	0.49	0.65	1.57	8914	1194	4	2	8	0	0	logfile
✔	8PUW	17949	2024-11-16	2023-07-17	3.01	3.27	3.01	3.2	0.004	0.69	0.0	0.04	12.23	0.01	2.276	3.16	0.00	1.6	98.4	0.0	0.73	0.85	0.88	3.21	3.2	0.004	0.53	0.0	0.04	13.20	0.00	2.521	4.37	0.92	1.5	98.5	0.0	2.10	0.25	0.86	0.90	2.87	11160	1442	4	0	0	0	0	logfile
✔	8PVB	17960	2024-11-19	2023-07-17	3.6	3.05	3.14	3.2	0.010	1.70	0.0	0.09	16.05	0.01	0.000	1.17	1.27	1.6	98.4	0.0	-0.14	0.60	0.79	4.63	3.2	0.002	0.56	0.0	0.04	14.83	0.00	0.000	4.69	1.37	0.8	99.2	0.0	1.21	0.99	0.72	0.83	3.89	19225	2275	25	0	80	0	0	logfile
✔	8K3W	36863	2024-11-16	2023-07-17	2.91	3.20	3.02	3.2	0.009	1.12	0.0	0.07	17.13	0.01	2.285	10.08	2.89	3.7	96.3	0.0	-0.02	0.57	0.73	2.43	3.3	0.003	0.54	0.0	0.04	16.97	0.00	2.541	5.50	3.79	2.8	97.2	0.0	2.16	0.68	0.58	0.77	2.72	10916	1388	4	0	6	0	0	logfile
✔	8PVF	17964	2024-11-16	2023-07-17	2.9	2.56	2.92	3.1	0.010	1.80	4.0	0.09	14.89	0.01	2.413	0.60	1.12	4.2	95.5	0.3	-1.16	0.54	0.80	4.62	3.1	0.003	0.56	0.0	0.05	16.67	0.00	2.630	5.55	2.32	2.3	97.4	0.3	0.25	1.94	0.68	0.87	5.01	10140	1348	8	0	4	0	0	logfile
✔	8K4B	36882	2024-11-15	2023-07-17	3.9	4.47	4.31	4.4	0.007	1.40	0.0	0.07	15.60	0.01	2.010	8.38	0.91	7.0	92.8	0.2	-3.82	0.66	0.75	1.21	4.4	0.003	0.83	0.0	0.04	16.85	0.00	2.000	10.69	3.33	6.5	93.5	0.0	-0.72	1.80	0.68	0.79	1.25	8918	1126	4	0	4	0	0	logfile
✔	8K3V	36862	2024-11-16	2023-07-17	3.1	3.38	3.15	3.3	0.008	1.07	2.0	0.07	17.59	0.01	2.227	8.20	4.91	5.4	94.6	0.0	-0.31	0.65	0.81	3.01	3.3	0.003	0.52	0.0	0.04	15.66	0.00	2.527	4.39	1.35	2.9	97.1	0.0	1.82	0.51	0.65	0.83	2.91	11248	1400	4	0	6	0	0	logfile
✔	8THR	41269	2024-11-14	2023-07-17	3.12	2.56	3.14	3.6	0.012	1.89	1.0	0.11	13.08	0.01	2.537	4.34	0.96	2.1	97.9	0.0	-3.14	0.77	0.75	2.62	3.6	0.003	0.89	0.0	0.05	15.21	0.01	2.415	12.70	3.51	4.2	95.8	0.0	-0.23	0.84	0.76	0.72	1.64	2937	389	2	0	1	0	0	logfile
✔	8THJ	41266	2024-11-16	2023-07-16	2.99	3.55	3.03	3.4	0.003	0.52	0.0	0.04	14.89	0.00	1.983	5.25	0.88	2.6	97.4	0.0	2.86	0.76	0.87	3.55	3.4	0.003	0.58	0.0	0.04	15.66	0.00	2.305	3.48	0.98	2.0	98.0	0.0	3.03	0.80	0.73	0.86	3.03	9642	1230	4	0	8	0	0	logfile
✔	8THi	41265	2024-11-15	2023-07-16	3.36	3.84	3.37	3.7	0.003	0.51	0.0	0.04	13.99	0.00	2.209	3.02	0.29	1.8	98.2	0.0	2.97	0.71	0.80	1.36	3.7	0.003	0.60	0.0	0.04	15.38	0.00	2.296	5.78	1.38	2.5	97.5	0.0	2.82	1.25	0.72	0.84	1.62	9519	1224	4	0	4	0	0	logfile
✔	8K3P	36855	2024-11-16	2023-07-16	3.64	4.09	3.71	4.0	0.010	0.98	0.0	0.07	15.32	0.00	2.293	9.47	3.22	4.5	95.5	0.0	0.23	0.64	0.79	1.60	4.0	0.003	0.53	0.0	0.04	15.54	0.00	2.555	6.16	2.57	3.4	96.6	0.0	2.05	1.65	0.66	0.82	1.72	9906	1320	4	0	4	0	0	logfile
✔	8K3Q	36856	2024-11-16	2023-07-16	2.6	2.98	2.74	2.9	0.008	0.87	0.0	0.05	14.73	0.01	1.495	4.57	1.89	3.4	96.6	0.0	0.38	0.66	0.82	3.35	2.9	0.027	0.71	0.0	0.04	15.93	0.01	2.630	3.31	0.86	3.1	96.9	0.0	1.91	1.20	0.66	0.83	3.62	11365	1448	4	0	2	0	0	logfile
✔	8K3R	36857	2024-11-16	2023-07-16	3.51	4.07	3.61	3.9	0.008	0.86	0.0	0.05	14.85	0.01	1.459	4.36	1.92	2.8	97.2	0.0	0.53	0.61	0.73	1.12	3.9	0.019	0.64	0.0	0.09	16.01	0.00	2.519	6.83	1.05	2.6	97.4	0.0	1.38	0.84	0.60	0.77	1.01	11061	1404	4	0	2	0	0	logfile
✔	8K3S	36858	2024-11-18	2023-07-16	3.0	3.13	2.98	3.1	0.004	0.76	0.0	0.04	14.32	0.01	1.671	12.52	0.77	6.3	93.5	0.2	-0.59	0.67	0.82	2.53	3.2	0.003	0.63	0.0	0.04	16.38	0.00	2.408	4.84	1.66	6.5	93.3	0.2	0.48	0.51	0.67	0.84	2.48	15761	1864	8	0	17	0	0	logfile
✔	8PTY	17925	2024-11-17	2023-07-16	3.58	3.60	3.53	3.7	0.005	0.65	0.0	0.05	14.26	0.00	2.184	11.96	0.13	8.6	91.4	0.0	-1.81	0.70	0.71	2.63	3.7	0.002	0.58	0.0	0.04	15.79	0.00	2.540	5.69	1.78	5.8	94.2	0.0	-1.45	1.28	0.80	0.83	2.13	14189	1786	4	0	2	0	0	logfile
✔	8K3o	36854	2024-11-18	2023-07-16	3.88	4.00	3.60	3.9	0.003	0.71	0.0	0.04	22.92	0.01	2.054	12.14	1.13	6.2	93.7	0.1	-1.14	0.79	0.70	0.82	3.9	0.004	0.78	1.0	0.04	23.70	0.00	2.111	14.57	4.98	7.3	92.6	0.1	-1.55	1.59	0.82	0.80	0.80	49261	2353	22	1432	0	0	0	logfile
✔	8K3J	36853	2024-11-15	2023-07-16	3.3	3.53	3.52	3.4	0.004	0.69	0.0	0.05	20.46	0.00	2.138	8.54	0.31	4.7	95.1	0.2	-0.34	0.80	0.79	2.17	3.4	0.003	0.69	0.0	0.05	17.62	0.00	2.321	5.16	4.76	4.9	94.9	0.2	-0.23	0.38	0.80	0.78	2.39	9108	1148	8	0	16	0	0	logfile
✔	8K3i	36852	2024-11-14	2023-07-15	2.83	2.47	2.67	2.7	0.007	0.67	0.0	0.04	13.37	0.01	2.060	6.04	0.00	2.8	97.2	0.0	0.64	0.74	0.87	4.43	2.8	0.003	0.54	0.0	0.04	15.72	0.00	2.638	4.26	1.06	2.3	97.7	0.0	1.59	0.90	0.72	0.88	3.41	7372	960	2	0	0	0	0	logfile
✔	8K3C	36849	2024-11-16	2023-07-15	2.88	3.12	2.93	3.1	0.014	1.17	0.0	0.07	10.35	0.01	2.138	11.02	0.57	7.8	92.1	0.1	-3.08	0.48	0.67	3.05	3.1	0.004	0.66	0.0	0.05	13.77	0.00	2.524	10.65	2.03	5.6	94.4	0.0	-1.33	0.59	0.61	0.76	2.40	10813	1395	4	0	0	0	0	logfile

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