Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8K37	36846	2024-11-18	2023-07-14	3.5	3.55	3.46	3.6	0.006	0.69	4.0	0.05	13.20	0.00	2.224	5.93	0.41	2.4	97.6	0.0	-0.80	0.70	0.85	2.95	3.5	0.004	0.62	0.0	0.05	15.50	0.00	2.483	4.57	4.40	2.1	97.9	0.0	-0.66	0.54	0.70	0.86	2.43	18528	2394	18	0	0	0	0	logfile
✔	8THC	41253	2024-11-19	2023-07-14	3.67	4.09	3.90	3.9	0.003	0.64	0.0	0.04	14.45	0.01	2.142	8.43	0.09	2.8	97.2	0.0	0.34	0.78	0.77	1.08	3.9	0.004	0.68	0.0	0.04	16.27	0.00	1.935	10.60	1.91	3.0	97.0	0.0	0.90	0.57	0.79	0.81	0.94	20430	2558	13	0	8	0	0	logfile
✔	8PTH	17871	2024-11-19	2023-07-14	2.73	2.59	2.66	2.8	0.002	0.44	0.0	0.04	17.86	0.00	2.072	3.02	1.88	4.8	95.2	0.0	0.96	0.74	0.89	3.83	2.8	0.003	0.50	0.0	0.04	17.81	0.00	2.350	1.65	1.36	5.1	94.9	0.0	0.73	0.89	0.73	0.89	3.90	18236	1104	7	27	1	1	8991	logfile
✔	8THD	41254	2024-11-19	2023-07-14	3.25	3.59	3.41	3.6	0.003	0.65	0.0	0.04	16.15	0.00	2.107	8.30	0.43	3.3	96.7	0.0	0.17	0.70	0.80	1.27	3.5	0.003	0.62	0.0	0.04	17.28	0.00	1.990	8.72	3.00	3.1	96.9	0.0	0.81	1.99	0.72	0.85	1.55	20396	2553	13	0	8	0	0	logfile
✔	8PTo	17876	2024-11-19	2023-07-14	2.7	3.36	2.80	3.1	0.003	0.43	0.0	0.04	10.47	0.00	2.212	6.93	2.40	1.4	98.6	0.0	1.31	0.89	0.90	3.39	3.1	0.003	0.65	0.0	0.04	13.72	0.00	2.468	6.61	1.39	1.7	98.3	0.0	1.41	0.42	0.87	0.89	2.65	19124	2418	12	0	3	0	0	logfile
✔	8THB	41252	2024-11-17	2023-07-14	3.2	3.49	3.29	3.4	0.003	0.55	0.0	0.04	16.45	0.00	2.192	8.31	0.37	2.4	97.6	0.0	0.17	0.73	0.85	2.22	3.4	0.003	0.57	0.0	0.04	16.82	0.00	1.939	8.24	2.43	2.6	97.4	0.1	1.26	0.39	0.73	0.86	2.15	14334	1782	10	0	8	0	0	logfile
✔	8PTP	17877	2024-11-19	2023-07-14	3.0	3.71	3.06	3.5	0.003	0.64	0.0	0.04	16.71	0.00	2.149	12.13	0.14	1.7	98.3	0.0	0.96	0.88	0.81	1.18	3.5	0.004	0.81	0.0	0.04	17.41	0.00	2.482	12.07	2.68	2.3	97.7	0.0	0.82	0.95	0.87	0.85	1.32	19039	2418	9	0	0	0	0	logfile
✔	8TGZ	41247	2024-11-17	2023-07-13	3.78	4.06	3.78	4.0	0.004	0.78	0.0	0.07	24.26	0.01	1.830	8.47	0.14	6.7	93.3	0.0	-0.95	0.72	0.78	1.75	4.0	0.003	0.69	0.0	0.05	17.98	0.00	2.353	6.24	2.10	8.4	91.5	0.1	-0.70	0.38	0.73	0.78	1.75	12820	871	9	0	14	0	6122	logfile
✔	8PT4	17867	2024-11-16	2023-07-13	3.33	4.03	3.35	3.8	0.002	0.53	0.0	0.04	11.88	0.00	2.215	11.04	4.94	3.1	96.3	0.6	-0.51	0.75	0.66	1.18	3.8	0.002	0.66	0.0	0.04	14.26	0.00	2.410	9.35	1.73	4.8	95.2	0.0	-0.14	1.18	0.83	0.79	1.94	11438	1437	4	0	0	0	0	logfile
✔	8PSU	17862	2024-11-18	2023-07-13	3.18	2.77	3.14	3.1	0.003	0.45	0.0	0.03	17.34	0.00	1.917	3.46	0.00	2.2	97.6	0.2	1.54	0.71	0.82	3.55	3.1	0.002	0.47	0.0	0.03	17.33	0.00	2.423	1.92	0.60	2.1	97.8	0.1	1.51	1.13	0.72	0.83	3.33	16169	971	6	29	1	0	7957	logfile
✔	8PSQ	17860	2024-11-18	2023-07-13	2.65	2.51	2.61	2.6	0.003	0.47	0.0	0.04	18.19	0.00	1.928	2.79	1.19	2.0	97.9	0.1	1.30	0.73	0.89	3.82	2.6	0.003	0.51	0.0	0.04	18.03	0.00	2.292	2.17	2.03	1.8	98.2	0.0	1.46	0.26	0.73	0.89	4.20	16079	969	7	28	2	1	7898	logfile
✔	8PT7	17869	2024-11-19	2023-07-13	2.8	2.94	2.75	2.9	0.002	0.44	0.0	0.03	18.02	0.00	1.778	3.66	1.29	2.4	97.5	0.1	1.49	0.79	0.90	3.63	2.8	0.003	0.46	0.0	0.04	17.78	0.00	1.851	2.31	1.40	2.4	97.6	0.0	1.67	0.32	0.78	0.90	3.60	17722	1071	7	29	2	0	8690	logfile
✔	8PSo	17858	2024-11-18	2023-07-13	2.4	2.34	2.37	2.4	0.003	0.56	0.0	0.04	18.69	0.00	1.693	2.47	1.55	2.1	97.9	0.0	1.47	0.74	0.88	4.68	2.4	0.003	0.53	0.0	0.04	18.05	0.00	1.837	1.48	1.19	2.4	97.6	0.0	1.22	0.22	0.73	0.89	4.72	16201	971	13	28	4	44	7937	logfile
✔	8PSS	17861	2024-11-19	2023-07-13	2.83	2.94	2.75	2.9	0.002	0.44	0.0	0.03	18.02	0.00	1.778	3.66	1.29	2.4	97.5	0.1	1.49	0.79	0.90	3.63	2.8	0.003	0.46	0.0	0.04	17.78	0.00	1.853	2.36	1.29	2.4	97.6	0.0	1.68	0.32	0.78	0.90	3.57	17722	1071	7	29	2	0	8690	logfile
✔	8PT6	17868	2024-11-20	2023-07-13	3.03	2.81	2.82	2.9	0.003	0.55	0.0	0.04	18.46	0.00	1.826	5.57	2.43	3.7	96.2	0.1	1.06	0.74	0.84	3.10	2.9	0.003	0.53	0.0	0.04	18.11	0.00	1.741	3.08	2.52	4.2	95.7	0.1	0.68	0.36	0.75	0.85	3.19	20436	1242	10	28	6	0	10051	logfile
✔	8PSD	17850	2024-11-18	2023-07-13	2.9	3.28	3.06	3.3	0.004	0.51	0.0	0.04	12.30	0.00	2.065	2.20	1.60	4.3	95.7	0.0	-0.16	0.64	0.81	3.11	3.3	0.002	0.48	0.0	0.04	13.27	0.00	2.405	2.02	1.45	4.3	95.7	0.0	-0.16	1.38	0.67	0.83	2.97	48067	3076	6	0	36	0	23498	logfile
✔	8PR2	17832	2024-11-17	2023-07-12	3.8	3.87	3.70	3.9	0.005	1.03	0.0	0.05	18.62	0.01	1.770	5.14	0.74	2.5	97.4	0.1	-0.80	0.74	0.81	1.58	3.9	0.004	0.91	1.0	0.04	18.97	0.00	2.375	9.73	3.08	1.7	98.3	0.0	2.55	0.42	0.75	0.83	1.56	14906	1816	6	0	0	0	0	logfile
✔	8K26	36829	2024-11-16	2023-07-12	3.6	3.91	3.69	3.7	0.006	1.31	1.0	0.07	17.74	0.01	2.221	8.76	0.71	5.7	94.1	0.2	-3.00	0.69	0.54	-0.04	3.7	0.006	1.01	1.0	0.05	17.51	0.00	2.233	23.17	2.56	5.8	94.0	0.2	-0.95	0.67	0.71	0.58	0.55	10549	1336	6	0	0	0	0	logfile
✔	8PR4	17834	2024-11-15	2023-07-12	3.5	4.03	3.51	3.8	0.008	1.33	0.0	0.07	17.21	0.01	2.309	4.25	1.00	7.5	92.4	0.2	-3.40	0.81	0.80	1.91	3.8	0.003	0.65	0.0	0.04	16.50	0.00	2.337	8.01	4.57	5.3	94.7	0.0	0.24	0.40	0.82	0.82	1.91	9494	1322	8	0	4	0	0	logfile
✔	8PR3	17833	2024-11-19	2023-07-12	3.9	4.21	3.80	4.0	0.006	1.08	0.0	0.05	17.80	0.01	2.278	6.13	0.67	3.0	96.9	0.0	-1.20	0.80	0.83	1.45	4.0	0.003	0.69	0.0	0.04	18.02	0.00	2.484	8.98	2.42	2.5	97.5	0.0	1.40	0.42	0.80	0.84	1.38	17888	2221	9	0	0	0	0	logfile

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