Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8PTW	17879	2024-11-17	2023-07-15	2.91	3.20	2.93	3.1	0.004	0.78	0.0	0.05	11.31	0.01	2.299	3.99	0.00	1.8	98.2	0.0	0.35	0.78	0.81	3.44	3.1	0.003	0.58	0.0	0.04	13.62	0.01	2.443	5.22	1.07	1.8	98.2	0.0	2.14	0.34	0.80	0.84	2.72	14242	1878	4	0	0	0	0	logfile
✔	8K3H	36851	2024-11-14	2023-07-15	2.86	2.80	2.67	2.8	0.003	0.52	0.0	0.04	15.58	0.00	2.237	4.01	0.00	2.1	97.9	0.0	0.44	0.76	0.89	3.98	2.8	0.003	0.52	0.0	0.04	15.50	0.00	2.584	3.33	1.06	1.7	98.3	0.0	1.51	0.29	0.77	0.90	3.75	7460	960	4	0	2	0	0	logfile
✔	8K37	36846	2024-11-18	2023-07-14	3.5	3.55	3.46	3.6	0.006	0.69	4.0	0.05	13.20	0.00	2.224	5.93	0.41	2.4	97.6	0.0	-0.80	0.70	0.85	2.95	3.5	0.004	0.62	0.0	0.05	15.50	0.00	2.483	4.57	4.40	2.1	97.9	0.0	-0.66	0.54	0.70	0.86	2.43	18528	2394	18	0	0	0	0	logfile
✔	8K2X	36842	2024-11-15	2023-07-14	3.2	3.52	3.20	3.4	0.003	0.57	0.0	0.04	16.75	0.00	2.283	9.17	0.00	4.6	95.4	0.0	0.69	0.83	0.89	2.38	3.4	0.003	0.57	0.0	0.04	17.24	0.00	2.491	6.18	3.64	4.3	95.7	0.0	0.89	0.29	0.82	0.89	2.32	8900	1138	7	0	1	0	0	logfile
✔	8K2W	36841	2024-11-14	2023-07-14	3.0	3.14	2.99	3.2	0.007	0.90	0.0	0.04	15.07	0.02	2.294	5.99	0.00	4.2	95.8	0.0	0.73	0.56	0.80	2.41	3.2	0.003	0.60	0.0	0.04	16.66	0.00	2.608	4.73	1.93	4.5	95.5	0.0	0.97	0.48	0.54	0.81	1.94	3143	386	3	0	4	0	0	logfile
✔	8K38	36847	2024-11-18	2023-07-14	3.2	3.30	3.16	3.3	0.003	0.52	1.0	0.04	12.99	0.00	2.215	4.22	0.12	1.7	98.3	0.0	1.76	0.74	0.88	3.22	3.3	0.003	0.49	0.0	0.04	15.58	0.00	2.416	2.95	1.97	1.7	98.3	0.0	1.81	0.45	0.74	0.91	2.65	50172	6396	24	0	0	0	0	logfile
✔	8K36	36845	2024-11-17	2023-07-14	3.48	3.55	3.15	3.6	0.008	0.81	0.0	0.06	12.36	0.00	2.254	3.21	0.80	1.8	98.2	0.0	-0.90	0.72	0.88	3.78	3.6	0.003	0.55	0.0	0.04	14.74	0.00	2.491	1.91	4.40	1.1	98.9	0.0	-0.60	0.54	0.71	0.90	3.01	14172	1848	12	0	0	0	0	logfile
✔	8K34	36843	2024-11-14	2023-07-14	2.81	3.42	2.84	3.2	0.004	0.74	0.0	0.04	17.75	0.00	2.000	16.66	2.07	3.9	96.1	0.0	-0.23	0.68	0.68	1.79	3.2	0.004	0.69	0.0	0.04	18.08	0.00	2.005	13.80	2.46	4.3	95.7	0.0	-0.28	1.16	0.68	0.68	1.64	7187	863	4	4	1	0	0	logfile
✔	8PTJ	17872	2024-11-19	2023-07-14	2.86	2.81	2.75	2.9	0.004	0.48	0.0	0.04	17.88	0.00	2.035	3.52	2.82	4.5	95.5	0.0	1.19	0.76	0.89	3.52	2.9	0.003	0.49	0.0	0.04	17.88	0.00	2.422	2.01	2.51	4.9	95.0	0.1	1.12	0.90	0.75	0.90	3.54	17874	1102	7	15	1	2	8841	logfile
✔	8PTG	17870	2024-11-19	2023-07-14	2.9	3.32	2.95	3.2	0.004	0.75	0.0	0.04	17.76	0.01	1.427	11.43	3.02	1.4	98.6	0.0	0.98	0.88	0.88	2.69	3.2	0.004	0.72	0.0	0.04	17.62	0.00	0.979	9.46	2.83	1.5	98.5	0.0	0.98	0.71	0.88	0.90	2.68	20292	2514	13	15	18	0	0	logfile
✔	8PTH	17871	2024-11-19	2023-07-14	2.73	2.59	2.66	2.8	0.002	0.44	0.0	0.04	17.86	0.00	2.072	3.02	1.88	4.8	95.2	0.0	0.96	0.74	0.89	3.83	2.8	0.003	0.50	0.0	0.04	17.81	0.00	2.350	1.65	1.36	5.1	94.9	0.0	0.73	0.89	0.73	0.89	3.90	18236	1104	7	27	1	1	8991	logfile
✔	8THB	41252	2024-11-17	2023-07-14	3.2	3.49	3.29	3.4	0.003	0.55	0.0	0.04	16.45	0.00	2.192	8.31	0.37	2.4	97.6	0.0	0.17	0.73	0.85	2.22	3.4	0.003	0.57	0.0	0.04	16.82	0.00	1.939	8.24	2.43	2.6	97.4	0.1	1.26	0.39	0.73	0.86	2.15	14334	1782	10	0	8	0	0	logfile
✔	8THD	41254	2024-11-19	2023-07-14	3.25	3.59	3.41	3.6	0.003	0.65	0.0	0.04	16.15	0.00	2.107	8.30	0.43	3.3	96.7	0.0	0.17	0.70	0.80	1.27	3.5	0.003	0.62	0.0	0.04	17.28	0.00	1.990	8.72	3.00	3.1	96.9	0.0	0.81	1.99	0.72	0.85	1.55	20396	2553	13	0	8	0	0	logfile
✔	8THC	41253	2024-11-19	2023-07-14	3.67	4.09	3.90	3.9	0.003	0.64	0.0	0.04	14.45	0.01	2.142	8.43	0.09	2.8	97.2	0.0	0.34	0.78	0.77	1.08	3.9	0.004	0.68	0.0	0.04	16.27	0.00	1.935	10.60	1.91	3.0	97.0	0.0	0.90	0.57	0.79	0.81	0.94	20430	2558	13	0	8	0	0	logfile
✔	8PTP	17877	2024-11-19	2023-07-14	3.0	3.71	3.06	3.5	0.003	0.64	0.0	0.04	16.71	0.00	2.149	12.13	0.14	1.7	98.3	0.0	0.96	0.88	0.81	1.18	3.5	0.004	0.81	0.0	0.04	17.41	0.00	2.482	12.07	2.68	2.3	97.7	0.0	0.82	0.95	0.87	0.85	1.32	19039	2418	9	0	0	0	0	logfile
✔	8PTo	17876	2024-11-19	2023-07-14	2.7	3.36	2.80	3.1	0.003	0.43	0.0	0.04	10.47	0.00	2.212	6.93	2.40	1.4	98.6	0.0	1.31	0.89	0.90	3.39	3.1	0.003	0.65	0.0	0.04	13.72	0.00	2.468	6.61	1.39	1.7	98.3	0.0	1.41	0.42	0.87	0.89	2.65	19124	2418	12	0	3	0	0	logfile
✔	8TGZ	41247	2024-11-17	2023-07-13	3.78	4.06	3.78	4.0	0.004	0.78	0.0	0.07	24.26	0.01	1.830	8.47	0.14	6.7	93.3	0.0	-0.95	0.72	0.78	1.75	4.0	0.003	0.69	0.0	0.05	17.98	0.00	2.353	6.24	2.10	8.4	91.5	0.1	-0.70	0.38	0.73	0.78	1.75	12820	871	9	0	14	0	6122	logfile
✔	8PSD	17850	2024-11-18	2023-07-13	2.9	3.28	3.06	3.3	0.004	0.51	0.0	0.04	12.30	0.00	2.065	2.20	1.60	4.3	95.7	0.0	-0.16	0.64	0.81	3.11	3.3	0.002	0.48	0.0	0.04	13.27	0.00	2.405	2.02	1.45	4.3	95.7	0.0	-0.16	1.38	0.67	0.83	2.97	48067	3076	6	0	36	0	23498	logfile
✔	8PSQ	17860	2024-11-18	2023-07-13	2.65	2.51	2.61	2.6	0.003	0.47	0.0	0.04	18.19	0.00	1.928	2.79	1.19	2.0	97.9	0.1	1.30	0.73	0.89	3.82	2.6	0.003	0.51	0.0	0.04	18.03	0.00	2.292	2.17	2.03	1.8	98.2	0.0	1.46	0.26	0.73	0.89	4.20	16079	969	7	28	2	1	7898	logfile
✔	8PT7	17869	2024-11-19	2023-07-13	2.8	2.94	2.75	2.9	0.002	0.44	0.0	0.03	18.02	0.00	1.778	3.66	1.29	2.4	97.5	0.1	1.49	0.79	0.90	3.63	2.8	0.003	0.46	0.0	0.04	17.78	0.00	1.851	2.31	1.40	2.4	97.6	0.0	1.67	0.32	0.78	0.90	3.60	17722	1071	7	29	2	0	8690	logfile

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