Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8T6A	41067	2024-11-14	2023-06-15	3.17	3.52	3.18	3.6	0.004	0.60	0.0	0.04	10.37	0.00	2.248	3.67	1.28	2.1	97.9	0.0	1.58	0.59	0.80	2.58	3.5	0.003	0.60	0.0	0.04	13.61	0.01	2.549	5.17	1.92	1.3	98.7	0.0	2.33	0.35	0.54	0.79	1.88	2947	387	2	0	1	0	0	logfile
✔	8T6B	41068	2024-11-14	2023-06-15	3.72	4.04	3.75	4.0	0.004	0.78	0.0	0.04	14.45	0.01	2.237	5.02	0.00	2.6	97.4	0.0	-1.30	0.47	0.68	1.39	4.1	0.004	0.83	0.0	0.04	15.88	0.01	2.596	9.38	3.85	4.2	95.8	0.0	-0.27	0.46	0.47	0.68	1.32	2916	387	2	0	1	0	0	logfile
✔	8T69	41066	2024-11-14	2023-06-15	2.89	3.18	2.89	3.2	0.004	0.67	0.0	0.04	10.45	0.01	2.381	3.52	0.64	1.8	98.2	0.0	1.12	0.59	0.82	3.29	3.2	0.003	0.64	0.0	0.04	13.89	0.01	2.589	4.70	2.57	2.6	97.4	0.0	1.84	1.00	0.56	0.81	2.48	2923	386	2	0	1	0	0	logfile
✔	8PFB	17645	2024-11-18	2023-06-15	3.67	4.42	3.71	4.0	0.004	0.90	0.0	0.05	14.62	0.01	2.194	3.85	0.32	1.5	98.5	0.0	-1.08	0.68	0.82	2.30	4.0	0.003	0.63	0.0	0.04	15.29	0.00	2.208	5.90	0.74	3.4	96.6	0.0	1.02	1.33	0.68	0.82	2.03	17137	1136	9	0	0	0	8598	logfile
✔	8PEo	17633	2024-11-17	2023-06-14	2.69	3.21	2.84	2.7	0.005	0.77	0.0	0.05	29.82	0.01	2.201	8.09	0.14	1.9	98.1	0.0	0.99	0.92	0.88	2.79	2.8	0.004	0.63	0.0	0.04	28.23	0.00	2.435	6.75	0.84	2.3	97.7	0.0	2.52	1.39	0.94	0.92	2.79	12835	853	12	294	0	0	0	logfile
✔	8PEP	17634	2024-11-17	2023-06-14	3.33	4.07	3.32	3.4	0.004	0.72	0.0	0.05	28.76	0.01	2.092	9.54	0.13	1.9	98.1	0.0	0.85	0.92	0.87	1.55	3.4	0.004	0.61	0.0	0.03	27.36	0.00	2.086	9.26	0.63	3.0	97.0	0.0	2.17	1.77	0.94	0.91	1.40	13492	939	12	294	0	0	0	logfile
✔	8T60	41062	2024-11-18	2023-06-14	3.29	3.54	3.31	3.4	0.003	0.51	0.0	0.04	11.07	0.00	2.114	4.09	1.85	6.6	93.4	0.0	0.46	0.70	0.78	3.49	3.4	0.003	0.55	0.0	0.04	13.31	0.00	2.083	5.76	1.60	5.4	94.6	0.0	0.57	0.63	0.70	0.79	3.11	14921	978	5	0	1	0	7418	logfile
✔	8T5S	41060	2024-11-14	2023-06-14	2.9	3.70	2.99	3.5	0.002	0.50	0.0	0.03	16.22	0.00	2.212	10.25	0.80	3.2	96.8	0.0	2.43	0.80	0.77	1.26	3.5	0.003	0.62	0.0	0.04	16.10	0.00	1.968	9.40	3.50	4.2	95.8	0.0	1.75	1.24	0.82	0.82	1.91	6799	693	4	60	3	0	0	logfile
✔	8JPX	36489	2024-11-17	2023-06-13	2.9	3.21	3.11	3.2	0.003	0.56	0.0	0.04	21.05	0.01	1.900	6.83	0.50	7.3	92.7	0.0	-0.57	0.76	0.89	3.28	3.2	0.004	0.62	0.0	0.05	21.44	0.00	1.866	5.46	2.20	7.4	92.4	0.1	-0.51	0.24	0.70	0.89	3.16	14362	1540	12	80	6	0	0	logfile
✔	8PE8	17629	2024-11-20	2023-06-13	3.46	3.95	3.86	3.9	0.002	0.53	0.0	0.04	18.53	0.00	2.221	11.61	0.48	3.4	96.6	0.0	0.65	0.71	0.77	0.76	3.9	0.002	0.59	0.0	0.04	18.63	0.00	2.468	9.87	4.49	3.5	96.5	0.0	0.63	0.39	0.74	0.81	0.59	54782	7392	14	0	0	0	0	logfile
✔	8T5C	41048	2024-11-17	2023-06-13	4.7	4.69	4.43	4.5	0.005	0.84	0.0	0.05	20.84	0.01	2.044	5.82	1.11	13.5	85.9	0.6	-2.26	0.74	0.72	—	4.5	0.004	0.89	0.0	0.05	14.18	0.00	2.301	17.35	0.00	14.5	85.0	0.5	-2.48	1.79	0.78	0.79	—	14189	1651	35	0	91	0	0	logfile
✔	8JPJ	36481	2024-11-16	2023-06-12	3.5	3.22	3.01	3.3	0.003	0.58	0.0	0.04	13.48	0.00	2.026	5.13	0.00	3.1	96.9	0.0	1.48	0.51	0.72	2.26	3.3	0.003	0.59	0.0	0.04	15.89	0.00	2.604	5.34	1.99	2.8	97.1	0.1	1.57	1.46	0.72	0.87	2.09	11448	1466	4	0	4	0	0	logfile
✔	8JPo	36485	2024-11-16	2023-06-12	3.4	3.43	3.16	3.4	0.004	0.63	0.0	0.04	12.94	0.00	2.267	6.38	0.00	2.8	97.2	0.0	0.44	0.75	0.90	3.16	3.4	0.002	0.53	0.0	0.04	13.98	0.00	2.286	4.69	0.48	3.3	96.7	0.0	1.61	0.37	0.74	0.91	2.64	11476	1466	4	0	8	0	0	logfile
✔	8PD9	17607	2024-11-15	2023-06-12	3.6	2.49	3.49	2.3	0.005	0.73	0.0	0.04	13.44	0.01	2.197	5.39	0.11	2.1	97.9	0.0	2.01	0.64	0.68	1.57	2.2	0.003	0.64	0.0	0.04	16.59	0.00	2.476	6.78	2.50	1.1	98.9	0.0	2.07	1.90	0.73	0.75	1.84	8107	1024	2	0	1	0	0	logfile
✔	8JPR	36487	2024-11-16	2023-06-12	3.4	3.63	3.40	3.7	0.003	0.56	0.0	0.04	13.51	0.00	2.111	6.61	0.00	2.2	97.8	0.0	1.04	0.69	0.82	2.53	3.6	0.003	0.56	0.0	0.04	15.55	0.00	2.072	6.47	1.53	2.2	97.8	0.0	1.91	1.07	0.67	0.87	1.85	11396	1460	4	0	8	0	0	logfile
✔	8T56	41043	2024-11-17	2023-06-12	2.8	2.38	2.74	2.9	0.027	1.66	0.0	0.11	14.22	0.01	2.385	1.27	0.00	0.5	99.5	0.0	0.58	0.84	0.87	4.71	2.8	0.003	0.57	0.0	0.04	15.38	0.00	2.503	3.46	1.96	0.8	99.2	0.0	3.20	1.18	0.81	0.87	3.33	13096	1498	18	0	36	0	0	logfile
✔	8JPS	36488	2024-11-14	2023-06-12	3.65	2.65	2.29	3.7	0.003	0.69	0.0	0.04	12.41	0.00	2.310	9.82	0.43	6.8	93.2	0.0	-0.34	0.64	0.68	1.57	3.7	0.004	0.79	0.0	0.04	15.05	0.00	2.321	12.11	3.45	7.2	92.8	0.0	-0.43	0.51	0.64	0.69	1.13	4616	640	4	0	0	0	0	logfile
✔	8T4Y	41040	2024-11-17	2023-06-12	3.58	4.16	3.66	4.0	0.003	0.66	0.0	0.04	16.20	0.00	2.242	7.50	0.00	4.1	95.9	0.0	2.13	0.68	0.73	1.49	4.0	0.003	0.64	0.0	0.04	17.26	0.00	2.467	6.70	5.78	3.0	97.0	0.0	2.77	0.56	0.74	0.79	1.59	13348	2004	8	0	4	0	0	logfile
✔	8T57	41044	2024-11-15	2023-06-12	2.7	2.45	2.65	3.0	0.027	1.65	0.0	0.12	11.19	0.01	2.385	1.27	0.00	0.8	99.2	0.0	0.77	0.80	0.82	4.03	3.0	0.003	0.59	0.0	0.04	14.24	0.00	2.586	6.33	1.33	1.8	98.2	0.0	2.45	0.57	0.76	0.83	2.72	8466	1008	4	0	20	0	0	logfile
✔	8JPN	36484	2024-11-15	2023-06-12	2.9	3.03	2.75	3.0	0.004	0.61	0.0	0.04	15.56	0.00	2.268	3.27	0.36	3.3	96.7	0.0	1.11	0.60	0.72	1.27	3.0	0.003	0.59	0.0	0.04	16.18	0.00	2.564	2.72	1.90	2.9	97.1	0.0	1.32	1.19	0.73	0.90	3.33	8557	1157	6	0	1	0	0	logfile

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