Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JTV	36653	2024-11-14	2023-06-22	3.77	4.24	3.67	4.2	0.006	0.66	0.0	0.04	12.16	0.01	2.293	8.08	0.36	4.2	95.8	0.0	0.62	0.51	0.62	0.67	4.2	0.003	0.68	0.0	0.04	15.06	0.00	2.639	9.10	2.89	4.9	95.1	0.0	1.14	0.37	0.50	0.65	0.67	3067	437	2	0	1	0	0	logfile
✔	8T8F	41098	2024-11-17	2023-06-22	4.8	5.11	4.71	4.7	0.003	0.75	1.0	0.05	13.37	0.00	2.201	18.73	0.14	7.3	92.7	0.0	-1.53	0.76	0.63	—	4.7	0.003	0.68	0.0	0.04	13.96	0.00	2.404	11.34	0.07	6.9	93.1	0.0	-0.38	1.27	0.77	0.66	—	13050	1623	5	0	0	0	0	logfile
✔	8JTS	36651	2024-11-14	2023-06-22	4.14	4.41	3.90	4.4	0.008	0.93	0.0	0.05	14.11	0.02	2.249	8.90	0.31	5.0	95.0	0.0	-0.32	0.53	0.67	—	4.4	0.003	0.69	0.0	0.04	14.21	0.00	2.481	9.82	0.00	5.3	94.7	0.0	1.16	1.14	0.54	0.67	—	3330	461	2	0	1	0	0	logfile
✔	8JTT	36652	2024-11-14	2023-06-22	3.87	4.32	3.71	4.4	0.006	0.87	0.0	0.05	12.93	0.02	2.250	7.82	0.00	4.0	96.0	0.0	-2.01	0.51	0.57	0.20	4.4	0.003	0.68	0.0	0.04	15.58	0.00	2.623	8.28	2.46	4.0	96.0	0.0	0.21	1.16	0.52	0.60	-0.31	3321	454	2	0	1	0	0	logfile
✔	8T8M	41099	2024-11-17	2023-06-22	3.0	3.51	—	3.4	0.003	0.56	0.0	0.04	14.01	0.00	2.230	6.14	0.00	4.3	95.7	0.0	0.12	0.80	0.81	3.02	3.4	0.006	0.68	0.0	0.05	15.75	0.00	2.441	5.47	1.82	5.0	95.0	0.0	0.41	0.28	0.82	0.86	2.78	13146	1770	6	0	2	0	0	logfile
✔	8PiV	17692	2024-11-19	2023-06-22	3.46	3.80	3.35	3.5	0.017	1.48	5.0	0.10	15.86	0.01	2.127	4.62	1.59	3.6	96.0	0.4	-0.16	0.54	0.51	2.31	3.6	0.003	0.70	0.0	0.04	15.45	0.00	2.368	8.71	2.13	2.2	97.6	0.2	2.05	1.67	0.69	0.84	1.71	18089	2293	21	0	16	6	0	logfile
✔	8T8E	41097	2024-11-15	2023-06-22	3.3	3.54	3.33	3.5	0.003	0.69	0.0	0.04	16.79	0.00	2.199	12.90	1.03	9.0	90.9	0.2	-3.74	0.72	0.78	1.57	3.5	0.004	0.64	0.0	0.04	17.60	0.00	2.533	9.02	2.87	8.6	91.4	0.0	-2.33	0.37	0.73	0.79	1.21	8755	1085	3	0	0	0	0	logfile
✔	8JTX	36655	2024-11-14	2023-06-22	3.28	3.65	3.31	3.6	0.003	0.70	0.0	0.04	15.90	0.00	2.297	2.73	0.46	3.9	96.1	0.0	-1.20	0.56	0.78	1.80	3.6	0.002	0.57	0.0	0.04	16.24	0.00	2.548	2.14	2.78	3.6	96.4	0.0	-0.29	0.32	0.62	0.81	1.91	4253	566	2	0	0	0	0	logfile
✔	8JT5	36633	2024-11-14	2023-06-21	3.06	3.30	3.09	3.3	0.005	0.81	1.0	0.05	15.38	0.01	2.268	6.88	1.67	2.1	97.6	0.3	1.66	0.61	0.85	2.09	3.3	0.004	0.67	0.0	0.04	15.74	0.01	2.591	7.22	3.00	1.8	98.2	0.0	1.81	0.36	0.60	0.85	1.40	2854	384	2	0	1	0	0	logfile
✔	8JTJ	36646	2024-11-16	2023-06-21	3.08	3.34	3.25	3.3	0.003	0.66	0.0	0.04	20.10	0.01	2.112	9.23	0.00	7.6	91.9	0.5	-1.45	0.69	0.73	2.54	3.3	0.003	0.65	0.0	0.04	20.88	0.00	2.443	7.63	2.57	7.9	91.7	0.4	-0.89	0.54	0.72	0.80	2.07	11637	1042	4	145	0	0	0	logfile
✔	8JTB	36639	2024-11-14	2023-06-21	2.93	3.11	2.90	3.2	0.006	0.94	1.0	0.06	15.62	0.01	2.211	5.58	1.35	1.1	98.4	0.5	0.86	0.63	0.86	1.40	3.2	0.003	0.68	0.0	0.04	16.73	0.01	2.571	2.96	2.02	1.9	98.1	0.0	2.03	0.93	0.63	0.86	0.98	2808	376	2	0	1	0	0	logfile
✔	8PiJ	17683	2024-11-13	2023-06-21	2.9	3.58	2.88	3.3	0.004	0.58	0.0	0.04	18.97	0.00	2.231	3.93	3.46	3.2	96.8	0.0	0.25	0.34	0.89	2.62	3.3	0.003	0.63	0.0	0.04	16.82	0.00	2.533	3.70	3.03	2.1	97.9	0.0	0.92	1.03	0.32	0.89	2.81	2191	288	3	0	2	0	0	logfile
✔	8JTD	36641	2024-11-18	2023-06-21	4.9	4.51	4.64	4.6	0.005	0.93	0.0	0.07	17.49	0.00	2.048	20.29	0.00	3.8	96.1	0.1	-0.29	0.63	0.55	—	4.6	0.006	1.01	0.0	0.06	12.93	0.01	2.269	26.10	0.00	6.7	93.3	0.0	-1.21	0.69	0.68	0.65	—	17275	1978	51	0	128	0	0	logfile
✔	8JT9	36637	2024-11-14	2023-06-21	2.97	1.96	2.94	3.3	0.007	0.76	0.0	0.04	15.91	0.01	2.246	5.16	0.67	0.8	99.2	0.0	2.28	0.56	0.88	2.70	3.3	0.004	0.75	0.0	0.04	16.09	0.01	2.597	6.36	2.68	1.6	98.4	0.0	2.20	0.89	0.55	0.88	2.55	2872	384	2	0	1	0	0	logfile
✔	8JTA	36638	2024-11-14	2023-06-21	3.36	3.64	3.38	3.6	0.013	1.26	0.0	0.07	14.05	0.01	2.320	7.70	2.67	5.5	94.5	0.0	-2.72	0.63	0.85	1.70	3.6	0.003	0.77	0.0	0.04	15.44	0.01	2.489	5.82	5.00	3.4	96.6	0.0	1.26	0.49	0.62	0.87	1.61	2879	386	2	0	1	0	0	logfile
✔	8JTC	36640	2024-11-14	2023-06-21	3.52	3.71	3.55	3.7	0.007	0.94	0.0	0.05	14.32	0.01	2.240	7.41	0.33	3.4	96.6	0.0	1.13	0.56	0.81	1.82	3.7	0.003	0.71	0.0	0.04	14.88	0.01	2.570	9.43	4.28	2.8	97.2	0.0	2.17	0.31	0.56	0.80	1.81	2941	391	2	0	1	0	0	logfile
✔	8JSo	36625	2024-11-15	2023-06-20	3.4	3.73	3.46	3.7	0.003	0.67	0.0	0.04	13.94	0.00	2.220	9.19	0.10	5.1	94.9	0.0	-0.64	0.65	0.80	1.60	3.7	0.003	0.70	0.0	0.04	15.86	0.00	2.529	6.41	2.13	4.8	95.2	0.0	-0.14	0.96	0.64	0.81	1.05	9045	1145	6	0	1	0	0	logfile
✔	8T7A	41089	2024-11-18	2023-06-20	2.8	2.99	2.78	3.0	0.005	0.71	0.0	0.05	13.49	0.01	2.212	7.47	0.66	2.0	98.0	0.0	0.46	0.70	0.83	3.76	3.0	0.004	0.58	0.0	0.04	15.51	0.00	2.518	4.05	3.59	1.8	98.2	0.0	0.68	0.34	0.70	0.85	4.00	15819	2040	15	0	3	0	0	logfile
✔	8T7H	41092	2024-11-17	2023-06-20	3.3	2.38	—	3.4	0.003	0.62	0.0	0.04	13.36	0.00	2.217	7.98	0.00	4.3	95.7	0.0	0.31	0.72	0.68	2.37	3.4	0.004	0.65	0.0	0.05	15.28	0.00	2.604	6.98	2.22	4.8	95.2	0.0	0.20	0.31	0.77	0.76	2.12	13100	1794	6	0	2	0	0	logfile
✔	8JSP	36626	2024-11-15	2023-06-20	3.65	3.82	3.55	3.8	0.006	0.79	0.0	0.05	14.06	0.00	2.204	13.73	0.86	5.9	94.1	0.0	-0.89	0.61	0.71	1.51	3.8	0.004	0.67	0.0	0.04	16.00	0.00	2.368	8.18	2.80	4.2	95.8	0.0	-0.09	1.06	0.63	0.72	1.55	8599	1102	6	0	1	0	0	logfile

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