Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8PD9	17607	2024-11-15	2023-06-12	3.6	2.49	3.49	2.3	0.005	0.73	0.0	0.04	13.44	0.01	2.197	5.39	0.11	2.1	97.9	0.0	2.01	0.64	0.68	1.57	2.2	0.003	0.64	0.0	0.04	16.59	0.00	2.476	6.78	2.50	1.1	98.9	0.0	2.07	1.90	0.73	0.75	1.84	8107	1024	2	0	1	0	0	logfile
✔	8T53	41042	2024-11-14	2023-06-12	4.1	4.29	4.68	4.1	0.002	0.59	0.0	0.04	12.60	0.00	2.201	11.96	0.00	1.8	98.2	0.0	0.81	0.45	0.45	—	4.2	0.002	0.63	0.0	0.04	13.48	0.00	2.545	9.12	0.00	2.2	97.8	0.0	1.57	0.61	0.44	0.40	—	6660	796	2	0	0	0	0	logfile
✔	8JPS	36488	2024-11-14	2023-06-12	3.65	2.65	2.29	3.7	0.003	0.69	0.0	0.04	12.41	0.00	2.310	9.82	0.43	6.8	93.2	0.0	-0.34	0.64	0.68	1.57	3.7	0.004	0.79	0.0	0.04	15.05	0.00	2.321	12.11	3.45	7.2	92.8	0.0	-0.43	0.51	0.64	0.69	1.13	4616	640	4	0	0	0	0	logfile
✔	8T50	41041	2024-11-17	2023-06-12	3.6	4.00	3.63	3.9	0.003	0.67	0.0	0.04	14.50	0.00	2.194	7.66	0.47	3.5	96.5	0.0	2.00	0.60	0.64	1.93	3.9	0.006	0.69	0.0	0.04	15.76	0.00	2.481	8.41	7.39	4.3	95.7	0.0	2.17	0.33	0.69	0.76	1.97	12720	1896	8	0	4	0	0	logfile
✔	8JPN	36484	2024-11-15	2023-06-12	2.9	3.03	2.75	3.0	0.004	0.61	0.0	0.04	15.56	0.00	2.268	3.27	0.36	3.3	96.7	0.0	1.11	0.60	0.72	1.27	3.0	0.003	0.59	0.0	0.04	16.18	0.00	2.564	2.72	1.90	2.9	97.1	0.0	1.32	1.19	0.73	0.90	3.33	8557	1157	6	0	1	0	0	logfile
✔	8JPD	36476	2024-11-14	2023-06-11	2.81	3.01	2.83	3.1	0.004	0.61	0.0	0.04	14.35	0.00	2.283	4.50	0.37	2.7	97.3	0.0	0.83	0.68	0.79	3.29	3.0	0.004	0.65	0.0	0.04	17.41	0.00	2.500	6.16	1.87	2.4	97.6	0.0	1.13	1.34	0.69	0.86	3.11	5198	658	2	0	1	0	0	logfile
✔	8JPF	36478	2024-11-13	2023-06-11	3.02	3.21	3.41	3.3	0.008	0.81	0.0	0.04	18.98	0.00	2.214	5.45	0.46	2.7	97.3	0.0	2.25	0.48	0.75	2.58	3.3	0.003	0.69	0.0	0.04	17.63	0.00	2.460	6.81	3.21	3.0	97.0	0.0	1.74	0.94	0.45	0.78	2.35	2269	304	3	0	1	0	0	logfile
✔	8PCZ	17596	2024-11-18	2023-06-11	3.21	2.32	3.12	2.1	0.003	0.56	0.0	0.04	12.91	0.00	2.216	5.81	0.23	2.3	97.7	0.0	1.86	0.70	0.75	2.92	2.1	0.003	0.58	0.0	0.04	15.79	0.00	2.475	5.60	2.16	2.0	98.0	0.0	2.43	0.53	0.79	0.81	2.40	16176	2046	2	0	0	0	0	logfile
✔	8PD7	17602	2024-11-15	2023-06-11	3.4	2.32	3.31	2.1	0.003	0.59	0.0	0.04	12.69	0.00	2.276	3.44	0.11	1.5	98.5	0.0	1.39	0.62	0.78	2.65	2.1	0.004	0.54	0.0	0.04	15.49	0.00	2.598	4.71	2.04	2.2	97.8	0.0	2.28	0.99	0.69	0.81	2.13	8121	1028	1	0	0	0	0	logfile
✔	8PD3	17599	2024-11-15	2023-06-11	3.3	2.29	3.23	2.1	0.003	0.56	0.0	0.04	13.67	0.00	2.227	4.23	0.00	1.3	98.7	0.0	0.70	0.61	0.78	2.84	2.1	0.004	0.56	0.0	0.04	15.70	0.00	2.543	4.41	2.15	1.7	98.3	0.0	2.30	0.96	0.67	0.81	2.04	8121	1028	1	0	0	0	0	logfile
✔	8PD2	17598	2024-11-15	2023-06-11	3.25	2.29	3.19	2.1	0.004	0.52	0.0	0.04	12.99	0.00	2.322	3.02	0.00	1.4	98.6	0.0	0.72	0.62	0.78	3.03	2.1	0.003	0.54	0.0	0.04	15.94	0.00	2.499	4.86	2.22	1.2	98.8	0.0	2.74	0.97	0.68	0.82	2.35	8270	1047	1	0	0	0	0	logfile
✔	8PD5	17601	2024-11-15	2023-06-11	3.4	2.30	3.32	2.1	0.003	0.53	0.0	0.04	13.12	0.00	2.148	2.18	0.00	2.2	97.8	0.0	1.83	0.61	0.77	2.43	2.1	0.003	0.51	0.0	0.04	15.85	0.00	2.597	4.06	2.28	1.7	98.3	0.0	2.40	0.97	0.68	0.81	2.22	8093	1024	1	0	0	0	0	logfile
✔	8JP8	36471	2024-11-17	2023-06-10	3.39	3.56	3.42	3.5	0.002	0.52	0.0	0.04	16.26	0.00	1.774	2.78	0.07	2.7	97.3	0.0	0.20	0.81	0.82	2.71	3.5	0.003	0.72	0.0	0.05	17.40	0.00	2.063	7.53	2.49	3.3	96.7	0.0	-0.16	0.83	0.84	0.85	2.74	13500	1678	16	0	20	0	0	logfile
✔	8JP6	36469	2024-11-17	2023-06-10	3.29	3.43	3.30	3.3	0.003	0.59	0.0	0.05	16.63	0.00	1.720	4.45	0.14	3.8	96.2	0.0	0.12	0.82	0.85	3.09	3.4	0.004	0.73	0.0	0.05	17.74	0.00	2.051	7.04	1.73	4.4	95.6	0.0	-0.05	0.61	0.83	0.87	2.95	13500	1678	16	0	20	0	0	logfile
✔	8JP7	36470	2024-11-17	2023-06-10	3.51	3.68	3.53	3.6	0.005	0.64	0.0	0.05	17.39	0.00	1.606	5.68	0.62	4.3	95.7	0.0	-0.06	0.80	0.81	2.69	3.6	0.005	0.76	0.0	0.05	17.66	0.00	2.044	9.42	2.22	4.3	95.7	0.0	0.10	1.28	0.83	0.83	2.54	13476	1674	16	0	20	0	0	logfile
✔	8JP5	36468	2024-11-17	2023-06-10	2.59	2.78	2.63	3.1	0.003	0.58	0.0	0.05	17.36	0.00	1.524	5.03	2.35	3.4	96.6	0.0	-0.20	0.73	0.77	2.58	3.0	0.003	0.66	0.0	0.05	18.12	0.00	2.079	7.16	3.32	2.7	97.3	0.0	0.18	0.52	0.74	0.80	2.75	13490	1676	16	0	20	0	0	logfile
✔	8JP9	36472	2024-11-17	2023-06-10	3.37	3.55	3.41	3.5	0.003	0.51	0.0	0.04	16.11	0.00	1.666	2.44	0.14	2.9	97.1	0.0	-0.23	0.82	0.82	2.68	3.5	0.003	0.70	0.0	0.05	17.29	0.00	2.055	7.19	2.49	3.3	96.7	0.0	-0.14	1.26	0.83	0.84	2.23	13500	1678	16	0	20	0	0	logfile
✔	8T4E	41028	2024-11-14	2023-06-09	3.5	3.74	3.32	3.7	0.003	0.65	0.0	0.04	16.23	0.00	2.286	5.50	0.28	2.8	97.2	0.0	1.81	0.58	0.73	0.37	3.7	0.003	0.56	0.0	0.04	16.44	0.00	2.467	4.63	3.10	2.1	97.9	0.0	3.13	0.41	0.68	0.80	0.75	7714	1089	3	0	0	0	0	logfile
✔	8T4K	41034	2024-11-17	2023-06-09	2.6	2.78	2.58	2.8	0.007	1.10	0.0	0.07	13.19	0.01	1.281	1.04	0.62	0.9	98.9	0.2	0.97	0.68	0.84	5.26	2.8	0.004	0.62	0.0	0.05	15.16	0.00	2.543	4.94	2.27	1.4	98.6	0.0	1.16	0.38	0.71	0.86	4.74	13560	1638	12	0	39	0	0	logfile
✔	8T4F	41029	2024-11-14	2023-06-09	3.5	3.67	3.43	3.6	0.003	0.57	0.0	0.04	15.37	0.00	2.243	3.32	0.56	1.7	98.3	0.0	1.99	0.67	0.80	1.74	3.6	0.003	0.57	0.0	0.04	16.35	0.00	2.584	3.39	2.79	2.0	98.0	0.0	2.60	0.77	0.67	0.81	1.43	7793	1097	3	0	0	0	0	logfile

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