Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8PBX	17587	2024-11-18	2023-06-09	3.3	3.77	3.44	3.7	0.005	0.59	0.0	0.04	15.13	0.00	1.897	11.63	0.26	6.5	93.4	0.0	-0.66	0.70	0.75	2.64	3.7	0.005	0.59	0.0	0.04	15.61	0.00	2.297	9.30	1.31	7.3	92.6	0.1	-1.10	0.31	0.67	0.74	2.46	33448	2187	2	0	0	0	16455	logfile
✔	8T4E	41028	2024-11-14	2023-06-09	3.5	3.74	3.32	3.7	0.003	0.65	0.0	0.04	16.23	0.00	2.286	5.50	0.28	2.8	97.2	0.0	1.81	0.58	0.73	0.37	3.7	0.003	0.56	0.0	0.04	16.44	0.00	2.467	4.63	3.10	2.1	97.9	0.0	3.13	0.41	0.68	0.80	0.75	7714	1089	3	0	0	0	0	logfile
✔	8T4M	41036	2024-11-18	2023-06-09	3.16	3.60	3.20	3.5	0.002	0.56	0.0	0.04	14.87	0.00	2.217	5.78	0.00	3.4	96.6	0.0	0.92	0.65	0.81	2.75	3.5	0.003	0.57	0.0	0.04	15.41	0.00	2.560	4.98	2.04	3.4	96.6	0.0	1.94	1.35	0.66	0.82	2.69	17000	2132	8	0	4	0	0	logfile
✔	8T4J	41033	2024-11-15	2023-06-09	3.9	4.16	3.61	4.0	0.002	0.60	0.0	0.04	13.69	0.00	2.275	5.11	0.28	1.8	98.2	0.0	0.48	0.65	0.79	0.89	4.0	0.003	0.63	0.0	0.04	15.54	0.00	2.432	6.64	3.52	1.3	98.7	0.0	1.34	0.99	0.67	0.80	0.58	7824	1107	3	0	0	0	0	logfile
✔	8T4F	41029	2024-11-14	2023-06-09	3.5	3.67	3.43	3.6	0.003	0.57	0.0	0.04	15.37	0.00	2.243	3.32	0.56	1.7	98.3	0.0	1.99	0.67	0.80	1.74	3.6	0.003	0.57	0.0	0.04	16.35	0.00	2.584	3.39	2.79	2.0	98.0	0.0	2.60	0.77	0.67	0.81	1.43	7793	1097	3	0	0	0	0	logfile
✔	8PC6	17595	2024-11-17	2023-06-09	3.04	3.48	3.06	3.1	0.004	0.68	0.0	0.04	28.54	0.01	2.142	7.87	0.13	2.2	97.8	0.0	0.83	0.89	0.83	2.36	3.1	0.003	0.57	0.0	0.03	27.26	0.00	2.186	8.19	0.25	2.6	97.4	0.0	2.20	1.33	0.93	0.91	2.69	13493	939	12	294	0	0	0	logfile
✔	8PC5	17594	2024-11-17	2023-06-09	3.02	3.37	3.06	3.0	0.006	0.79	0.0	0.06	29.26	0.01	2.205	7.09	0.42	1.9	98.1	0.0	1.05	0.90	0.86	3.01	3.0	0.004	0.59	0.0	0.03	27.74	0.00	2.366	5.88	0.98	2.5	97.5	0.0	2.40	1.95	0.93	0.91	2.45	12836	853	11	294	0	0	0	logfile
✔	8T4H	41031	2024-11-14	2023-06-09	3.8	3.97	3.47	3.9	0.004	0.76	0.0	0.04	15.55	0.00	2.267	5.59	0.57	2.2	97.8	0.0	1.54	0.62	0.75	0.99	3.9	0.003	0.59	0.0	0.04	16.60	0.00	2.563	5.72	4.26	2.0	98.0	0.0	2.52	0.96	0.67	0.80	0.92	7702	1088	3	0	0	0	0	logfile
✔	8T46	41021	2024-11-15	2023-06-08	3.6	3.90	3.43	3.8	0.003	0.63	0.0	0.04	16.79	0.01	2.278	4.95	0.28	2.1	97.8	0.1	1.31	0.66	0.80	1.19	3.8	0.002	0.51	0.0	0.04	17.31	0.00	2.440	4.68	4.76	1.6	98.4	0.0	2.88	1.92	0.69	0.82	1.22	7885	1113	2	0	0	0	0	logfile
✔	8T3V	41013	2024-11-15	2023-06-07	3.39	3.88	3.56	3.9	0.005	0.81	0.0	0.05	15.86	0.01	2.175	11.45	0.44	2.6	97.4	0.0	0.38	0.52	0.64	0.69	3.9	0.003	0.65	0.0	0.04	16.57	0.00	2.484	8.56	3.60	3.2	96.8	0.0	0.92	0.75	0.57	0.81	2.07	8742	1136	6	0	2	0	0	logfile
✔	8Jo4	36455	2024-11-14	2023-06-07	3.04	3.24	3.06	3.2	0.004	0.59	0.0	0.05	13.29	0.00	2.202	9.05	3.21	2.0	97.9	0.1	1.06	0.71	0.78	3.68	3.2	0.003	0.54	0.0	0.04	15.91	0.00	2.396	8.96	1.93	1.8	98.2	0.0	1.77	0.48	0.69	0.77	3.21	5719	709	4	0	4	0	0	logfile
✔	8T3T	41011	2024-11-17	2023-06-07	3.21	3.55	3.10	3.3	0.004	0.60	0.0	0.04	27.44	0.00	2.202	7.81	0.27	2.9	97.1	0.0	0.21	0.89	0.91	2.14	3.3	0.004	0.57	0.0	0.03	27.32	0.00	2.500	4.92	3.62	3.1	96.9	0.0	1.43	0.24	0.89	0.92	1.36	12991	885	14	292	4	0	0	logfile
✔	8T3S	41010	2024-11-15	2023-06-07	3.07	3.44	3.18	3.4	0.005	0.75	1.0	0.05	15.22	0.00	2.185	9.29	0.53	2.5	97.5	0.0	0.78	0.63	0.85	2.72	3.4	0.004	0.57	0.0	0.04	15.57	0.00	2.367	7.86	3.84	2.2	97.8	0.0	1.35	0.91	0.60	0.85	2.78	8769	1119	6	0	4	0	0	logfile
✔	8T3K	41004	2024-11-20	2023-06-07	3.33	2.44	3.36	3.1	0.008	1.06	0.0	0.05	20.31	0.01	2.225	7.61	0.20	7.2	92.8	0.0	-1.55	0.72	0.67	1.36	3.1	0.003	0.54	0.0	0.04	19.32	0.00	2.376	8.15	1.96	6.1	93.9	0.0	-0.43	0.43	0.74	0.71	1.05	19768	1204	4	0	15	0	9730	logfile
✔	8T3W	41015	2024-11-17	2023-06-07	3.25	3.53	3.11	3.3	0.004	0.64	0.0	0.04	26.53	0.00	2.284	6.74	1.74	2.8	97.2	0.0	-1.27	0.88	0.88	2.25	3.3	0.003	0.60	0.0	0.03	27.16	0.00	2.445	4.92	3.22	2.1	97.9	0.0	0.89	0.55	0.90	0.92	2.22	13001	886	14	292	4	0	0	logfile
✔	8Jo3	36454	2024-11-14	2023-06-07	2.66	2.82	2.65	2.8	0.003	0.53	0.0	0.04	18.82	0.00	2.196	9.66	2.56	1.4	98.6	0.0	1.75	0.70	0.82	3.43	2.8	0.004	0.56	0.0	0.04	18.55	0.00	2.337	7.12	3.04	1.6	98.4	0.0	1.69	0.24	0.70	0.82	3.67	5715	709	4	0	3	0	0	logfile
✔	8JoL	36459	2024-11-15	2023-06-07	3.0	3.98	2.98	3.4	0.009	1.46	0.0	0.07	18.20	0.01	2.214	35.79	16.43	12.3	86.8	0.8	-4.77	0.56	0.70	0.79	3.4	0.003	0.82	0.0	0.04	16.66	0.00	2.003	7.62	1.43	3.6	96.4	0.0	0.69	2.15	0.62	0.87	1.21	8513	1087	5	0	4	0	0	logfile
✔	8T2R	40985	2024-11-17	2023-06-06	3.1	3.34	3.14	3.3	0.006	0.96	0.0	0.05	25.03	0.01	2.174	4.24	1.15	3.1	96.3	0.5	-2.13	0.68	0.83	2.96	3.3	0.003	0.62	0.0	0.03	24.53	0.00	2.166	8.23	4.32	3.1	96.3	0.5	1.03	0.40	0.74	0.86	2.90	15063	388	4	552	15	0	0	logfile
✔	8T2T	40987	2024-11-17	2023-06-06	3.0	3.39	3.19	9.5	0.006	0.97	0.0	0.05	24.84	0.01	1.982	4.25	0.00	4.5	95.0	0.5	-1.78	0.45	0.06	0.14	3.0	0.007	1.14	0.0	0.05	26.47	0.01	1.703	28.77	2.93	6.3	93.7	0.0	-2.26	2.53	0.74	0.69	1.62	14876	387	5	546	12	0	0	logfile
✔	8T2S	40986	2024-11-17	2023-06-06	3.0	3.20	3.02	3.2	0.004	0.89	0.0	0.04	24.68	0.01	2.251	3.85	2.04	2.9	97.1	0.0	-2.71	0.64	0.82	3.11	3.2	0.003	0.61	0.0	0.03	24.25	0.00	2.108	7.73	3.50	5.0	95.0	0.0	-0.08	0.93	0.70	0.86	2.76	14998	389	3	551	13	0	0	logfile

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