Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8T2T	40987	2024-11-17	2023-06-06	3.0	3.39	3.19	9.5	0.006	0.97	0.0	0.05	24.84	0.01	1.982	4.25	0.00	4.5	95.0	0.5	-1.78	0.45	0.06	0.14	3.0	0.007	1.14	0.0	0.05	26.47	0.01	1.703	28.77	2.93	6.3	93.7	0.0	-2.26	2.53	0.74	0.69	1.62	14876	387	5	546	12	0	0	logfile
✔	8JNJ	36449	2024-11-16	2023-06-06	3.3	3.66	3.37	3.6	0.004	0.49	0.0	0.04	10.55	0.00	2.292	7.26	1.45	1.6	98.4	0.0	-0.38	0.63	0.84	3.60	3.6	0.002	0.55	0.0	0.04	13.95	0.00	2.631	7.30	1.77	1.8	98.2	0.0	1.42	0.95	0.58	0.83	2.52	11736	1516	2	0	0	0	0	logfile
✔	8T25	40980	2024-11-16	2023-06-05	3.62	3.81	3.74	3.8	0.003	0.63	0.0	0.04	18.09	0.01	2.200	10.48	0.44	4.0	96.0	0.0	-0.27	0.62	0.60	0.80	3.8	0.003	0.67	0.0	0.04	18.35	0.00	2.567	8.88	4.94	5.9	94.1	0.0	-0.70	0.35	0.64	0.63	0.88	6408	787	2	0	0	0	0	logfile
✔	8T23	40979	2024-11-14	2023-06-05	3.87	4.12	4.24	7.5	0.005	1.00	0.0	0.05	19.22	0.01	2.136	16.85	0.59	11.9	88.1	0.0	-3.06	0.59	0.48	0.19	7.5	0.003	0.80	0.0	0.05	18.15	0.01	2.558	14.86	4.98	11.4	88.6	0.0	-2.36	0.88	0.62	0.54	0.19	6451	781	6	0	6	0	0	logfile
✔	8T2E	40981	2024-11-18	2023-06-05	3.5	3.64	3.46	3.6	0.023	1.67	0.0	0.14	11.27	0.01	2.373	0.73	0.14	1.8	98.1	0.1	0.66	0.63	0.82	3.24	3.6	0.003	0.63	0.0	0.04	14.15	0.00	2.434	5.89	1.99	2.4	97.6	0.0	0.30	1.92	0.58	0.81	2.53	15021	1632	20	0	295	0	0	logfile
✔	8JMT	36426	2024-11-13	2023-06-05	3.3	3.55	3.41	3.7	0.003	0.74	0.0	0.04	14.38	0.00	2.204	8.56	0.00	3.5	96.5	0.0	-0.01	0.35	0.59	1.38	3.7	0.004	0.60	0.0	0.04	16.68	0.00	2.634	9.60	2.46	3.5	96.5	0.0	1.69	1.17	0.33	0.61	0.53	1894	234	1	0	0	0	0	logfile
✔	8JLZ	36409	2024-11-14	2023-06-04	3.09	2.32	3.33	2.1	0.005	0.71	0.0	0.04	13.33	0.01	2.170	6.28	0.12	3.7	96.3	0.0	-0.56	0.78	0.77	2.77	2.1	0.004	0.62	0.0	0.04	15.22	0.00	2.525	4.90	1.48	3.3	96.7	0.0	0.72	0.35	0.79	0.80	2.43	7730	1015	6	0	1	0	0	logfile
✔	8JLX	36407	2024-11-13	2023-06-03	3.0	3.13	2.80	3.1	0.004	0.75	0.0	0.05	14.32	0.01	2.247	12.73	0.00	11.9	88.1	0.0	-2.27	0.54	0.71	2.31	3.1	0.004	0.76	0.0	0.05	17.69	0.00	2.471	7.95	5.88	9.8	90.2	0.0	-2.13	0.43	0.53	0.73	2.44	2277	293	3	0	0	0	0	logfile
✔	8JLW	36406	2024-11-13	2023-06-03	3.0	3.23	2.87	3.2	0.005	0.69	0.0	0.04	14.61	0.01	2.255	11.03	0.00	9.3	90.7	0.0	-1.71	0.58	0.71	4.14	3.2	0.004	0.71	0.0	0.04	16.81	0.01	2.544	8.87	1.29	7.0	93.0	0.0	-1.42	0.37	0.55	0.72	3.69	2157	280	3	0	0	0	0	logfile
✔	8JLF	36395	2024-11-15	2023-06-02	3.01	3.25	3.07	3.3	0.011	1.11	0.0	0.08	13.11	0.01	2.246	8.30	0.00	3.3	96.7	0.0	-0.19	0.50	0.76	2.96	3.3	0.003	0.49	0.0	0.04	14.58	0.00	2.426	6.95	1.59	2.1	97.9	0.0	1.03	0.97	0.58	0.83	2.64	8177	1012	4	0	5	0	0	logfile
✔	8JLD	36393	2024-11-16	2023-06-02	2.48	2.34	2.40	2.8	0.004	0.71	0.0	0.04	29.74	0.01	1.941	4.35	0.32	1.4	98.6	0.0	0.65	0.78	0.87	3.08	2.7	0.004	0.60	0.0	0.03	28.29	0.00	2.194	4.45	2.92	1.5	98.5	0.0	3.17	0.34	0.78	0.88	2.47	11844	746	10	290	0	0	0	logfile
✔	8JLB	36391	2024-11-16	2023-06-02	2.36	2.12	2.25	2.5	0.004	0.69	0.0	0.04	29.91	0.01	1.988	3.26	0.16	1.5	98.5	0.0	0.69	0.76	0.85	3.59	1.7	0.004	0.59	0.0	0.04	28.20	0.00	2.207	3.64	1.79	1.1	98.9	0.0	2.96	1.10	0.77	0.85	3.23	11844	746	10	290	0	0	0	logfile
✔	8JLA	36390	2024-11-16	2023-06-02	3.44	2.77	3.38	3.0	0.006	0.88	0.0	0.05	28.21	0.01	1.607	3.59	0.16	1.4	98.6	0.0	0.68	0.78	0.82	1.24	2.9	0.004	0.61	0.0	0.03	28.28	0.00	2.117	7.22	3.87	1.6	98.4	0.0	3.37	0.58	0.82	0.85	1.31	12314	748	10	312	0	0	0	logfile
✔	8T1K	40970	2024-11-14	2023-06-02	3.14	3.28	3.06	3.3	0.012	1.46	1.0	0.07	12.82	0.01	2.350	1.24	0.00	2.6	97.4	0.0	0.05	0.79	0.85	4.33	3.3	0.004	0.97	1.0	0.04	15.41	0.00	1.782	4.37	1.86	2.0	98.0	0.0	0.93	1.68	0.78	0.88	4.07	6973	840	5	0	5	0	0	logfile
✔	8JKZ	36384	2024-11-15	2023-06-02	3.6	3.43	3.51	3.4	0.007	0.74	0.0	0.04	17.97	0.00	2.219	10.00	1.00	10.0	89.9	0.1	-1.21	0.72	0.84	2.29	3.4	0.003	0.60	0.0	0.04	17.89	0.00	2.514	7.80	3.32	9.0	90.8	0.2	-0.50	0.37	0.75	0.84	1.98	8444	1053	3	0	1	0	0	logfile
✔	8JL9	36389	2024-11-16	2023-06-02	2.65	2.16	2.47	2.0	0.005	0.86	1.0	0.05	28.86	0.01	1.865	2.36	0.00	1.9	98.1	0.0	0.24	0.60	0.65	2.76	1.8	0.004	0.59	0.0	0.04	28.22	0.00	2.467	3.58	1.77	1.4	98.6	0.0	2.95	1.16	0.80	0.85	3.52	12314	753	10	310	0	0	0	logfile
✔	8T1F	40962	2024-11-20	2023-06-02	3.49	3.75	3.60	3.7	0.006	1.32	0.0	0.06	13.75	0.01	2.171	4.71	0.85	11.6	87.7	0.6	-5.59	0.62	0.82	3.07	3.7	0.003	0.80	0.0	0.04	15.81	0.00	2.370	9.11	2.86	10.1	89.5	0.3	-1.37	1.42	0.69	0.85	2.41	20790	2542	8	0	8	0	0	logfile
✔	8JLJ	36399	2024-11-15	2023-06-02	3.1	2.95	2.70	3.0	0.008	0.99	3.0	0.06	13.60	0.01	2.256	8.09	0.82	3.9	96.1	0.0	-0.40	0.65	0.81	3.07	3.0	0.004	0.67	0.0	0.04	15.90	0.00	2.525	3.56	1.55	4.3	95.7	0.0	0.73	0.56	0.72	0.88	3.60	8918	1132	6	0	1	0	0	logfile
✔	8JLN	36401	2024-11-15	2023-06-02	3.24	3.56	3.30	3.6	0.002	0.64	0.0	0.04	14.36	0.00	2.216	9.18	0.00	5.0	95.0	0.0	-0.14	0.54	0.74	1.32	3.6	0.003	0.64	0.0	0.04	16.57	0.00	2.577	7.08	1.92	6.2	93.8	0.0	-0.26	1.54	0.57	0.79	1.52	9117	1152	6	0	1	0	0	logfile
✔	8JLP	36403	2024-11-14	2023-06-02	3.23	3.50	3.28	3.6	0.003	0.63	0.0	0.04	14.93	0.00	2.209	10.42	0.00	4.8	95.2	0.0	-0.31	0.60	0.71	2.06	3.6	0.004	0.99	1.0	0.04	16.71	0.00	2.469	8.16	2.14	5.0	95.0	0.0	0.34	0.38	0.57	0.74	1.53	7343	921	5	0	1	0	0	logfile

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