Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JLo	36402	2024-11-14	2023-06-02	3.52	3.78	3.53	3.7	0.003	0.69	0.0	0.04	14.26	0.00	2.257	7.12	0.25	4.5	95.5	0.0	-0.64	0.59	0.79	2.09	3.7	0.003	0.61	0.0	0.04	16.40	0.00	2.343	6.09	1.26	4.1	95.9	0.0	0.28	0.41	0.63	0.81	1.60	7343	922	5	0	1	0	0	logfile
✔	8JLN	36401	2024-11-15	2023-06-02	3.24	3.56	3.30	3.6	0.002	0.64	0.0	0.04	14.36	0.00	2.216	9.18	0.00	5.0	95.0	0.0	-0.14	0.54	0.74	1.32	3.6	0.003	0.64	0.0	0.04	16.57	0.00	2.577	7.08	1.92	6.2	93.8	0.0	-0.26	1.54	0.57	0.79	1.52	9117	1152	6	0	1	0	0	logfile
✔	8JLP	36403	2024-11-14	2023-06-02	3.23	3.50	3.28	3.6	0.003	0.63	0.0	0.04	14.93	0.00	2.209	10.42	0.00	4.8	95.2	0.0	-0.31	0.60	0.71	2.06	3.6	0.004	0.99	1.0	0.04	16.71	0.00	2.469	8.16	2.14	5.0	95.0	0.0	0.34	0.38	0.57	0.74	1.53	7343	921	5	0	1	0	0	logfile
✔	8JLQ	36404	2024-11-15	2023-06-02	2.84	3.01	2.88	3.1	0.005	0.78	1.0	0.05	13.14	0.00	2.203	18.53	0.41	4.0	96.0	0.0	-0.45	0.59	0.69	2.82	3.1	0.003	0.70	0.0	0.04	15.95	0.00	2.496	13.51	2.44	4.2	95.8	0.0	0.11	0.51	0.57	0.72	1.97	9033	1140	6	0	1	0	0	logfile
✔	8T1K	40970	2024-11-14	2023-06-02	3.14	3.28	3.06	3.3	0.012	1.46	1.0	0.07	12.82	0.01	2.350	1.24	0.00	2.6	97.4	0.0	0.05	0.79	0.85	4.33	3.3	0.004	0.97	1.0	0.04	15.41	0.00	1.782	4.37	1.86	2.0	98.0	0.0	0.93	1.68	0.78	0.88	4.07	6973	840	5	0	5	0	0	logfile
✔	8JKZ	36384	2024-11-15	2023-06-02	3.6	3.43	3.51	3.4	0.007	0.74	0.0	0.04	17.97	0.00	2.219	10.00	1.00	10.0	89.9	0.1	-1.21	0.72	0.84	2.29	3.4	0.003	0.60	0.0	0.04	17.89	0.00	2.514	7.80	3.32	9.0	90.8	0.2	-0.50	0.37	0.75	0.84	1.98	8444	1053	3	0	1	0	0	logfile
✔	8JLK	36400	2024-11-15	2023-06-02	3.22	3.56	3.28	3.6	0.005	0.84	0.0	0.05	14.64	0.01	2.213	11.02	0.95	6.2	93.8	0.0	-0.94	0.61	0.67	0.98	3.5	0.003	0.67	0.0	0.04	16.58	0.00	2.460	6.14	2.21	4.2	95.8	0.0	0.04	1.08	0.67	0.79	1.85	8824	1129	6	0	1	0	0	logfile
✔	8JLB	36391	2024-11-16	2023-06-02	2.36	2.12	2.25	2.5	0.004	0.69	0.0	0.04	29.91	0.01	1.988	3.26	0.16	1.5	98.5	0.0	0.69	0.76	0.85	3.59	1.7	0.004	0.59	0.0	0.04	28.20	0.00	2.207	3.64	1.79	1.1	98.9	0.0	2.96	1.10	0.77	0.85	3.23	11844	746	10	290	0	0	0	logfile
✔	8T1i	40968	2024-11-18	2023-06-02	4.68	7.67	5.02	4.6	0.008	0.63	0.0	0.04	11.37	0.00	1.958	12.22	0.00	12.2	87.7	0.1	-3.42	0.87	0.77	—	4.6	0.008	0.68	1.0	0.04	11.42	0.00	1.880	9.42	0.00	10.7	89.3	0.0	-0.87	0.48	0.89	0.80	—	49568	7857	27	0	20	0	0	logfile
✔	8JLG	36396	2024-11-14	2023-06-02	2.87	3.10	2.94	3.1	0.011	1.11	0.0	0.08	13.81	0.01	2.213	8.78	0.00	4.7	95.3	0.0	-1.01	0.54	0.83	4.44	3.1	0.003	0.55	0.0	0.05	15.79	0.00	2.451	5.58	3.07	3.6	96.4	0.0	-0.65	0.92	0.59	0.84	3.86	4426	531	4	0	5	0	0	logfile
✔	8T1F	40962	2024-11-20	2023-06-02	3.49	3.75	3.60	3.7	0.006	1.32	0.0	0.06	13.75	0.01	2.171	4.71	0.85	11.6	87.7	0.6	-5.59	0.62	0.82	3.07	3.7	0.003	0.80	0.0	0.04	15.81	0.00	2.370	9.11	2.86	10.1	89.5	0.3	-1.37	1.42	0.69	0.85	2.41	20790	2542	8	0	8	0	0	logfile
✔	8JLR	36405	2024-11-15	2023-06-02	3.0	3.35	3.14	3.3	0.003	0.61	0.0	0.04	14.18	0.00	2.200	15.48	0.21	4.3	95.7	0.0	-0.20	0.64	0.75	2.21	3.3	0.004	0.68	0.0	0.04	16.28	0.00	2.499	11.80	1.85	4.5	95.5	0.0	-0.07	0.49	0.61	0.77	1.79	8934	1130	6	0	1	0	0	logfile
✔	8JL9	36389	2024-11-16	2023-06-02	2.65	2.16	2.47	2.0	0.005	0.86	1.0	0.05	28.86	0.01	1.865	2.36	0.00	1.9	98.1	0.0	0.24	0.60	0.65	2.76	1.8	0.004	0.59	0.0	0.04	28.22	0.00	2.467	3.58	1.77	1.4	98.6	0.0	2.95	1.16	0.80	0.85	3.52	12314	753	10	310	0	0	0	logfile
✔	8JLD	36393	2024-11-16	2023-06-02	2.48	2.34	2.40	2.8	0.004	0.71	0.0	0.04	29.74	0.01	1.941	4.35	0.32	1.4	98.6	0.0	0.65	0.78	0.87	3.08	2.7	0.004	0.60	0.0	0.03	28.29	0.00	2.194	4.45	2.92	1.5	98.5	0.0	3.17	0.34	0.78	0.88	2.47	11844	746	10	290	0	0	0	logfile
✔	8JLA	36390	2024-11-16	2023-06-02	3.44	2.77	3.38	3.0	0.006	0.88	0.0	0.05	28.21	0.01	1.607	3.59	0.16	1.4	98.6	0.0	0.68	0.78	0.82	1.24	2.9	0.004	0.61	0.0	0.03	28.28	0.00	2.117	7.22	3.87	1.6	98.4	0.0	3.37	0.58	0.82	0.85	1.31	12314	748	10	312	0	0	0	logfile
✔	8JLF	36395	2024-11-15	2023-06-02	3.01	3.25	3.07	3.3	0.011	1.11	0.0	0.08	13.11	0.01	2.246	8.30	0.00	3.3	96.7	0.0	-0.19	0.50	0.76	2.96	3.3	0.003	0.49	0.0	0.04	14.58	0.00	2.426	6.95	1.59	2.1	97.9	0.0	1.03	0.97	0.58	0.83	2.64	8177	1012	4	0	5	0	0	logfile
✔	8JKB	36367	2024-11-18	2023-06-01	3.27	4.57	3.29	3.9	0.004	0.67	0.0	0.05	13.37	0.00	2.142	8.50	0.16	4.0	96.0	0.0	-1.95	0.84	0.71	2.10	4.0	0.004	0.88	0.0	0.04	15.55	0.00	2.455	11.12	1.82	4.2	95.8	0.0	-1.57	0.92	0.90	0.85	2.00	17169	2220	15	0	0	0	0	logfile
✔	8T0Q	40945	2024-11-17	2023-06-01	3.06	2.84	3.09	3.3	0.008	1.06	1.0	0.28	18.27	0.01	1.734	38.90	3.74	3.9	95.8	0.3	1.56	0.86	0.86	3.43	3.3	0.005	1.26	2.0	0.10	17.26	0.01	2.071	11.13	3.27	3.3	96.6	0.1	1.31	1.55	0.85	0.86	3.07	12355	1547	8	0	6	0	0	logfile
✔	8T12	40952	2024-11-16	2023-06-01	3.34	3.81	3.37	3.7	0.004	0.69	0.0	0.04	17.59	0.00	2.147	9.16	0.60	5.6	94.0	0.4	0.31	0.70	0.73	1.49	3.7	0.003	0.63	0.0	0.04	18.14	0.00	2.488	5.49	3.06	5.5	94.4	0.2	0.37	1.67	0.80	0.84	1.68	10813	1343	3	0	2	0	0	logfile
✔	8T0M	40944	2024-11-17	2023-06-01	2.4	2.53	2.44	2.5	0.003	0.56	0.0	0.04	16.14	0.00	2.184	5.34	1.17	1.4	98.6	0.0	1.20	0.77	0.86	4.07	2.6	0.004	0.59	0.0	0.04	16.87	0.00	2.134	5.99	2.36	1.5	98.5	0.0	1.42	1.10	0.75	0.85	3.95	47538	6102	28	0	0	0	0	logfile

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