Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8T13	40953	2024-11-15	2023-06-01	3.45	3.82	3.47	3.7	0.002	0.53	0.0	0.04	18.19	0.00	2.200	7.19	0.10	4.8	95.2	0.0	0.32	0.65	0.67	1.71	3.7	0.002	0.55	0.0	0.04	18.91	0.00	2.436	5.73	1.60	5.1	94.9	0.0	0.31	0.42	0.75	0.79	1.80	9304	1167	3	0	2	0	0	logfile
✔	8JKB	36367	2024-11-18	2023-06-01	3.27	4.57	3.29	3.9	0.004	0.67	0.0	0.05	13.37	0.00	2.142	8.50	0.16	4.0	96.0	0.0	-1.95	0.84	0.71	2.10	4.0	0.004	0.88	0.0	0.04	15.55	0.00	2.455	11.12	1.82	4.2	95.8	0.0	-1.57	0.92	0.90	0.85	2.00	17169	2220	15	0	0	0	0	logfile
✔	8T03	40933	2024-11-14	2023-05-31	2.72	3.05	2.73	3.0	0.014	1.76	0.0	0.23	17.02	0.00	2.028	3.19	1.63	4.3	95.7	0.0	-0.46	0.44	0.74	4.16	3.0	0.003	0.58	0.0	0.04	16.12	0.00	2.489	4.56	1.23	2.7	97.3	0.0	1.99	0.96	0.60	0.86	3.45	6878	852	10	0	6	4	0	logfile
✔	8T06	40936	2024-11-14	2023-05-31	3.32	3.61	3.29	3.6	0.014	1.73	0.0	0.08	13.20	0.00	2.510	0.67	0.96	3.2	96.8	0.0	-0.80	0.50	0.74	3.51	3.5	0.003	0.63	0.0	0.04	15.19	0.00	2.511	6.42	1.23	2.6	97.4	0.0	2.01	0.68	0.64	0.85	1.97	6712	852	8	0	2	0	0	logfile
✔	8JJP	36364	2024-11-15	2023-05-31	2.9	3.15	3.04	3.1	0.003	0.60	0.0	0.04	16.87	0.01	2.202	6.48	3.84	3.6	96.4	0.0	0.22	0.64	0.86	2.55	3.1	0.003	0.56	0.0	0.04	16.49	0.00	2.569	5.55	3.74	3.8	96.2	0.0	0.66	1.22	0.64	0.86	2.86	9165	1161	7	0	1	0	0	logfile
✔	8JJo	36361	2024-11-14	2023-05-31	3.4	3.75	3.53	3.8	0.003	0.64	0.0	0.04	17.70	0.00	2.184	10.68	0.31	5.7	94.3	0.0	-0.11	0.40	0.71	1.06	3.8	0.003	0.60	0.0	0.04	18.32	0.00	2.628	8.22	3.72	5.9	94.1	0.0	0.86	0.40	0.36	0.73	1.19	3016	375	2	0	1	0	0	logfile
✔	8P7W	17537	2024-11-17	2023-05-31	3.04	3.33	3.02	3.3	0.004	0.72	0.0	0.04	15.99	0.00	2.206	9.76	0.45	6.1	93.9	0.0	-1.44	0.65	0.86	2.29	3.4	0.004	0.67	1.0	0.04	16.52	0.00	2.274	8.19	3.18	6.0	94.0	0.0	-0.36	0.95	0.66	0.87	2.35	14380	1852	8	0	0	0	0	logfile
✔	8T04	40934	2024-11-14	2023-05-31	2.98	3.38	3.00	3.3	0.014	1.83	0.0	0.23	16.39	0.00	2.320	2.10	0.27	5.4	94.6	0.0	-1.07	0.41	0.70	3.54	3.3	0.003	0.58	0.0	0.04	16.26	0.00	2.525	7.25	2.18	2.4	97.6	0.0	1.28	0.50	0.57	0.83	2.61	6874	852	8	0	6	0	0	logfile
✔	8P8A	17543	2024-11-17	2023-05-31	3.2	3.30	3.14	3.3	0.006	1.01	0.0	0.06	17.65	0.01	2.213	4.01	10.55	7.2	92.7	0.1	-3.83	0.61	0.84	3.07	3.3	0.003	0.63	0.0	0.04	16.57	0.00	2.535	4.84	3.79	6.4	93.5	0.1	-0.21	1.57	0.61	0.87	2.82	13337	1709	9	0	4	0	0	logfile
✔	8T07	40937	2024-11-14	2023-05-31	3.38	3.84	3.51	3.8	0.014	1.71	0.0	0.08	12.73	0.00	2.368	0.90	0.27	3.8	96.2	0.0	-1.32	0.52	0.76	2.89	3.8	0.003	0.61	0.0	0.04	14.84	0.00	2.567	6.79	1.23	2.1	97.9	0.0	1.05	0.55	0.65	0.83	1.34	6710	852	8	0	2	0	0	logfile
✔	8T05	40935	2024-11-14	2023-05-31	3.22	3.71	3.26	3.7	0.014	1.85	1.0	0.26	16.96	0.01	2.120	2.80	0.93	5.8	93.9	0.3	-2.10	0.45	0.74	3.17	3.6	0.004	0.63	0.0	0.04	16.40	0.01	2.036	6.28	1.68	4.5	95.5	0.0	1.16	1.55	0.58	0.84	2.54	5104	631	6	0	6	0	0	logfile
✔	8P76	17519	2024-11-14	2023-05-30	2.0	1.89	2.02	2.0	0.005	0.61	0.0	0.04	16.64	0.00	2.258	6.57	0.90	1.3	98.5	0.2	1.97	0.66	0.79	5.30	2.0	0.003	0.64	0.0	0.04	16.72	0.00	2.397	5.98	1.08	2.1	97.7	0.2	1.80	0.26	0.66	0.79	5.31	5261	630	7	0	2	151	0	logfile
✔	8SZL	40920	2024-11-18	2023-05-30	3.12	3.99	3.18	3.6	0.004	0.65	0.0	0.04	13.64	0.00	2.040	5.54	0.00	4.2	95.8	0.0	-0.97	0.73	0.57	2.14	3.6	0.003	0.74	0.0	0.04	15.64	0.00	2.553	8.74	0.86	4.2	95.8	0.0	0.09	2.19	0.86	0.79	1.45	15081	1960	4	0	0	0	0	logfile
✔	8P79	17522	2024-11-14	2023-05-30	1.7	1.76	1.73	1.8	0.014	1.73	0.0	0.08	14.30	0.01	2.251	3.34	0.90	2.1	97.7	0.2	-1.48	0.63	0.75	6.80	1.8	0.003	0.62	0.0	0.04	15.87	0.00	2.581	4.72	0.36	1.3	98.5	0.2	1.92	1.15	0.68	0.77	6.37	5256	630	6	0	1	180	0	logfile
✔	8P77	17520	2024-11-14	2023-05-30	1.8	1.83	1.92	1.9	0.006	0.58	0.0	0.04	16.68	0.00	2.228	5.35	1.08	1.3	98.5	0.2	2.01	0.68	0.79	5.73	1.9	0.004	0.65	0.0	0.04	16.94	0.01	2.424	6.03	1.26	1.3	98.5	0.2	1.82	0.74	0.68	0.80	5.44	5271	630	7	0	2	137	0	logfile
✔	8JJE	36345	2024-11-14	2023-05-30	3.4	3.75	3.47	3.7	0.011	1.51	1.0	0.09	16.24	0.01	1.829	0.77	1.86	2.5	97.5	0.0	-2.00	0.70	0.83	3.16	3.7	0.004	0.64	0.0	0.04	15.58	0.00	2.250	3.85	3.01	2.8	97.2	0.0	0.27	1.35	0.72	0.82	2.58	6670	794	8	0	20	1	0	logfile
✔	8P6Y	17511	2024-11-14	2023-05-30	1.9	1.73	1.95	1.9	0.005	0.60	0.0	0.04	17.03	0.00	2.148	3.62	0.36	1.0	98.9	0.2	1.99	0.68	0.84	6.33	1.9	0.004	0.68	0.0	0.04	17.01	0.01	2.160	4.01	1.08	1.3	98.5	0.2	1.72	0.75	0.68	0.85	6.30	5266	630	7	0	3	158	0	logfile
✔	8P6V	17508	2024-11-14	2023-05-30	1.9	1.76	1.97	1.9	0.005	0.62	0.0	0.04	16.30	0.00	2.221	5.67	1.26	1.8	98.1	0.2	1.53	0.64	0.77	5.52	1.9	0.005	0.69	0.0	0.05	16.84	0.01	2.544	6.75	2.35	1.6	98.2	0.2	1.00	0.77	0.65	0.78	5.32	5243	630	7	0	2	138	0	logfile
✔	8SZK	40919	2024-11-14	2023-05-30	3.58	2.67	3.72	2.8	0.008	1.05	0.0	0.05	17.88	0.01	2.168	18.01	0.87	8.0	91.1	0.9	-0.59	0.75	0.71	1.48	2.8	0.008	1.18	1.0	0.05	18.57	0.01	2.040	16.92	3.97	8.0	91.9	0.1	-0.43	1.39	0.74	0.74	1.45	7392	904	5	0	0	0	0	logfile
✔	8SZZ	40926	2024-11-18	2023-05-30	2.9	3.06	2.89	3.0	0.005	0.71	0.0	0.05	14.17	0.01	2.197	3.30	0.43	1.5	98.5	0.0	-1.08	0.72	0.85	3.42	3.0	0.002	0.50	0.0	0.04	17.37	0.00	2.325	3.82	1.31	1.8	98.2	0.0	2.51	0.49	0.74	0.87	2.98	48815	6504	72	0	24	0	0	logfile

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