Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8J84	36059	2024-12-28	2023-04-30	3.3	4.04	3.29	3.9	0.002	0.58	0.0	0.04	17.27	0.00	2.166	15.78	4.31	5.6	94.4	0.0	-1.01	0.80	0.77	1.33	3.9	0.003	0.63	0.0	0.04	17.44	0.00	2.482	11.62	4.68	5.9	94.1	0.0	-0.98	0.33	0.80	0.77	1.00	7448	906	2	0	0	0	0	logfile
✔	8SoY	40671	2024-12-29	2023-04-30	2.85	2.95	2.81	3.0	0.005	0.73	0.0	0.05	12.14	0.01	2.374	1.86	0.00	2.3	97.7	0.0	-0.69	0.70	0.82	2.95	3.0	0.004	0.61	0.0	0.05	15.27	0.01	2.591	2.76	3.73	2.7	97.3	0.0	-0.10	0.26	0.70	0.83	1.69	10074	1422	6	0	0	0	0	logfile
✔	8SNX	40641	2024-12-30	2023-04-28	3.4	3.30	3.34	3.3	0.003	0.57	0.0	0.04	15.10	0.00	2.202	10.24	0.33	3.0	97.0	0.0	1.44	0.71	0.84	2.87	3.3	0.007	0.69	1.0	0.04	16.39	0.01	1.828	9.59	2.41	3.2	96.8	0.0	1.44	1.11	0.73	0.87	2.53	13741	1675	6	10	0	0	0	logfile
✔	8J7U	36049	2024-12-29	2023-04-28	3.12	3.20	3.07	3.1	0.004	0.83	0.0	0.05	15.33	0.01	1.982	8.65	1.88	3.7	96.3	0.0	0.27	0.60	0.75	2.50	3.1	0.007	0.78	0.0	0.05	16.02	0.01	2.010	11.62	4.49	3.9	96.1	0.0	0.49	0.50	0.65	0.68	2.10	11003	1423	8	0	2	0	0	logfile
✔	8oX0	17251	2024-12-30	2023-04-28	2.52	2.85	2.85	2.9	0.007	0.88	0.0	0.06	27.18	0.01	2.156	2.71	0.00	1.0	99.0	0.0	1.78	0.77	0.79	4.78	2.9	0.005	0.62	0.0	0.04	28.26	0.00	2.030	3.52	1.83	2.1	97.9	0.0	2.50	0.25	0.84	0.89	3.73	12271	787	20	290	0	57	0	logfile
✔	8J7W	36051	2024-12-29	2023-04-28	2.92	2.91	2.81	2.9	0.004	0.74	0.0	0.05	16.93	0.01	1.831	7.85	2.60	3.5	96.5	0.0	0.30	0.51	0.67	2.47	2.8	0.004	0.70	0.0	0.05	17.19	0.00	2.096	7.90	2.93	3.3	96.7	0.0	0.87	0.39	0.67	0.71	2.61	11026	1425	8	0	2	0	0	logfile
✔	8J7R	36046	2024-12-27	2023-04-28	3.7	3.03	3.63	3.4	0.010	1.34	0.0	0.13	24.43	0.00	2.220	9.29	6.85	2.5	97.5	0.0	-0.13	0.69	0.76	0.98	3.0	0.004	0.64	0.0	0.03	22.89	0.00	2.503	9.43	3.65	2.5	97.5	0.0	2.23	1.37	0.72	0.80	1.43	4034	238	3	97	3	1	0	logfile
✔	8oX1	17252	2024-12-30	2023-04-28	2.7	3.00	2.89	3.0	0.009	1.05	1.0	0.06	26.00	0.01	2.326	5.33	0.00	1.8	98.2	0.0	0.87	0.82	0.89	4.59	3.0	0.004	0.57	0.0	0.03	27.18	0.00	2.481	5.45	1.57	1.8	98.2	0.0	2.92	0.90	0.83	0.90	3.46	13258	905	19	290	0	11	0	logfile
✔	8J80	36055	2024-12-29	2023-04-28	2.68	2.84	2.75	2.8	0.005	0.73	0.0	0.05	17.01	0.01	1.989	6.76	3.05	3.5	96.5	0.0	0.48	0.53	0.72	2.53	2.8	0.005	0.87	0.0	0.05	17.24	0.00	1.631	6.63	2.49	2.6	97.4	0.0	1.52	0.47	0.67	0.73	2.67	11172	1444	7	0	1	0	0	logfile
✔	8J7Y	36053	2024-12-29	2023-04-28	3.4	3.79	3.40	3.7	0.002	0.50	0.0	0.04	13.14	0.00	1.914	7.04	0.16	3.1	96.9	0.0	1.40	0.75	0.80	1.82	3.7	0.003	0.68	0.0	0.04	15.05	0.00	2.156	7.31	1.22	3.3	96.7	0.0	1.13	0.69	0.78	0.88	2.59	11008	1426	8	0	2	0	0	logfile
✔	8J7X	36052	2024-12-29	2023-04-28	3.4	3.93	3.38	3.7	0.002	0.45	0.0	0.04	10.17	0.00	2.029	4.79	0.16	2.4	97.5	0.1	1.75	0.74	0.78	1.98	3.7	0.005	0.69	0.0	0.04	14.89	0.00	2.377	7.23	2.90	3.7	96.3	0.0	1.21	1.63	0.77	0.88	2.37	11136	1440	6	0	0	0	0	logfile
✔	8J7V	36050	2024-12-29	2023-04-28	2.79	2.88	2.79	2.8	0.004	0.73	0.0	0.05	16.71	0.01	2.208	7.08	1.54	3.3	96.7	0.0	0.39	0.62	0.79	2.92	2.8	0.003	0.70	0.0	0.04	16.96	0.00	2.539	8.36	2.75	2.8	97.2	0.0	1.14	0.35	0.73	0.80	3.09	11083	1432	6	0	0	0	0	logfile
✔	8oWJ	17238	2024-12-27	2023-04-28	3.75	3.75	3.51	4.1	0.012	2.26	0.0	0.11	15.84	0.02	2.610	8.57	3.57	0.0	100.0	0.0	-1.73	0.45	0.61	2.82	4.2	0.004	0.91	0.0	0.05	16.37	0.00	2.574	17.69	0.36	9.7	90.3	0.0	-3.30	1.91	0.49	0.72	3.13	2720	360	10	0	0	0	0	logfile
✔	8oWK	17239	2024-12-27	2023-04-28	3.86	3.20	3.47	4.0	0.013	3.09	0.0	0.12	7.40	0.01	2.508	14.24	3.23	0.0	100.0	0.0	0.74	0.46	0.67	5.30	4.0	0.006	0.85	0.0	0.05	14.40	0.00	2.462	17.09	0.97	6.3	93.7	0.0	-3.39	1.71	0.49	0.74	6.86	3050	400	10	0	0	0	0	logfile
✔	8J7H	36041	2024-12-29	2023-04-27	3.3	3.45	3.16	3.5	0.004	0.75	0.0	0.05	13.74	0.01	2.232	13.20	0.10	4.4	95.6	0.0	0.52	0.56	0.73	3.80	3.6	0.004	0.58	0.0	0.04	15.42	0.00	2.481	10.68	1.12	4.0	96.0	0.0	0.47	0.46	0.58	0.77	3.14	9457	1180	6	0	0	1	0	logfile
✔	8oWD	17234	2024-12-27	2023-04-27	3.28	3.36	1.89	3.4	0.012	2.44	0.0	0.12	21.08	0.00	2.506	5.03	16.13	0.0	100.0	0.0	-0.81	0.49	0.81	4.66	3.4	0.006	0.77	0.0	0.05	17.46	0.00	2.567	12.73	7.74	2.1	97.9	0.0	-3.48	0.71	0.46	0.79	6.23	1525	200	5	0	0	0	0	logfile
✔	8J76	36029	2024-12-27	2023-04-27	3.7	3.88	3.80	3.9	0.007	1.24	4.0	0.09	15.61	0.00	1.926	14.52	0.27	7.0	93.0	0.0	-1.36	0.50	0.72	1.35	4.0	0.003	0.75	0.0	0.04	16.05	0.00	2.535	10.93	3.45	5.1	94.9	0.0	0.43	0.55	0.49	0.72	1.47	3771	493	2	0	3	0	0	logfile
✔	8SNM	40629	2024-12-28	2023-04-27	3.84	4.11	3.83	4.0	0.004	0.74	0.0	0.05	13.05	0.01	2.183	11.42	0.00	5.6	94.4	0.0	-0.67	0.68	0.78	2.04	4.0	0.003	0.67	0.0	0.04	16.06	0.00	2.254	8.48	1.92	5.0	95.0	0.0	0.11	0.98	0.71	0.82	0.96	8986	1134	4	0	2	0	0	logfile
✔	8J7F	36039	2024-12-29	2023-04-27	2.6	2.84	2.57	2.9	0.009	1.12	1.0	0.07	16.63	0.00	1.812	21.63	0.40	4.5	95.4	0.1	-2.36	0.56	0.74	3.35	2.9	0.003	0.59	0.0	0.04	15.58	0.00	2.454	7.93	1.71	3.2	96.8	0.0	1.41	1.15	0.57	0.76	2.60	9961	1176	13	0	20	10	0	logfile
✔	8J77	36030	2024-12-27	2023-04-27	3.7	3.92	3.74	4.0	0.006	1.03	0.0	0.06	15.39	0.01	2.149	13.42	0.27	8.6	91.4	0.0	-0.89	0.59	0.78	2.99	4.0	0.003	0.67	0.0	0.04	15.32	0.00	2.578	7.57	2.65	6.8	93.2	0.0	0.61	0.51	0.55	0.76	2.20	3778	493	3	0	4	0	0	logfile

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