Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8oWE	17235	2024-12-27	2023-04-27	3.75	3.64	3.54	3.8	0.014	2.47	20.0	0.17	22.52	0.03	1.831	11.09	18.33	1.4	98.6	0.0	-2.67	0.41	0.73	5.00	3.7	0.003	0.81	0.0	0.05	18.24	0.00	2.593	13.52	6.33	7.4	92.6	0.0	-3.82	1.48	0.43	0.76	5.27	2940	385	10	0	0	0	0	logfile
✔	8SNo	40631	2024-12-27	2023-04-27	2.78	3.06	2.77	3.0	0.004	0.71	0.0	0.04	12.79	0.00	2.127	9.82	0.00	5.5	94.5	0.0	-0.11	0.64	0.83	2.65	3.1	0.004	0.59	0.0	0.04	15.79	0.00	2.292	4.64	2.06	4.5	95.5	0.0	0.54	1.27	0.63	0.86	2.39	5685	718	3	0	1	0	0	logfile
✔	8SNE	40624	2024-12-28	2023-04-27	3.0	3.23	3.07	3.3	0.008	0.74	0.0	0.05	17.69	0.00	2.108	5.84	0.63	4.7	95.2	0.1	0.12	0.62	0.80	2.80	3.3	0.003	0.55	0.0	0.04	17.31	0.00	2.180	5.01	2.69	4.1	95.7	0.1	0.62	0.30	0.60	0.81	2.26	6025	735	6	1	6	0	0	logfile
✔	8J74	36025	2024-12-28	2023-04-27	3.6	3.95	3.85	3.9	0.004	0.73	0.0	0.05	24.91	0.00	2.203	15.84	0.00	6.0	94.0	0.0	0.74	0.63	0.81	1.38	3.9	0.003	0.68	0.0	0.04	16.95	0.00	2.410	12.85	2.89	5.2	94.8	0.0	0.98	0.40	0.62	0.81	1.56	8288	1030	6	0	14	0	0	logfile
✔	8J77	36030	2024-12-27	2023-04-27	3.7	3.92	3.74	4.0	0.006	1.03	0.0	0.06	15.39	0.01	2.149	13.42	0.27	8.6	91.4	0.0	-0.89	0.59	0.78	2.99	4.0	0.003	0.67	0.0	0.04	15.32	0.00	2.578	7.57	2.65	6.8	93.2	0.0	0.61	0.51	0.55	0.76	2.20	3778	493	3	0	4	0	0	logfile
✔	8J7M	36042	2024-12-28	2023-04-27	3.1	3.57	3.19	3.5	0.011	1.24	6.0	0.08	18.14	0.01	2.124	16.26	1.27	8.3	91.7	0.0	-2.26	0.63	0.80	4.42	3.5	0.003	0.58	0.0	0.04	16.45	0.00	2.443	7.00	1.74	5.1	94.9	0.0	0.70	0.44	0.64	0.83	3.68	8806	1028	8	0	14	0	0	logfile
✔	8SNM	40629	2024-12-28	2023-04-27	3.84	4.11	3.83	4.0	0.004	0.74	0.0	0.05	13.05	0.01	2.183	11.42	0.00	5.6	94.4	0.0	-0.67	0.68	0.78	2.04	4.0	0.003	0.67	0.0	0.04	16.06	0.00	2.254	8.48	1.92	5.0	95.0	0.0	0.11	0.98	0.71	0.82	0.96	8986	1134	4	0	2	0	0	logfile
✔	8J7N	36043	2024-12-27	2023-04-27	3.0	3.05	2.62	3.0	0.008	0.82	0.0	0.06	12.26	0.00	2.025	16.74	0.00	13.5	86.5	0.0	-5.22	0.42	0.90	5.56	3.0	0.003	0.69	0.0	0.05	15.66	0.00	2.557	6.91	3.17	10.0	90.0	0.0	-4.12	1.29	0.40	0.91	4.55	3258	405	3	0	0	0	0	logfile
✔	8SNH	40625	2024-12-26	2023-04-27	2.7	2.39	2.83	2.4	0.007	0.82	1.0	0.06	18.28	0.00	1.908	10.56	1.04	2.9	97.0	0.1	0.51	0.73	0.83	4.22	2.4	0.005	0.68	0.0	0.04	17.22	0.00	2.095	12.44	1.29	3.2	96.8	0.0	0.90	0.36	0.74	0.85	4.09	43557	2992	24	0	24	0	19392	logfile
✔	8SND	40623	2024-12-27	2023-04-27	3.1	3.43	3.22	3.5	0.007	0.59	0.0	0.04	17.17	0.00	2.254	4.23	0.00	1.6	98.2	0.1	1.20	0.60	0.80	2.97	3.4	0.003	0.48	0.0	0.04	16.97	0.00	2.234	3.56	3.80	2.6	97.3	0.1	1.28	0.30	0.62	0.81	2.98	6090	742	4	0	6	8	0	logfile
✔	8J7P	36045	2024-12-27	2023-04-27	3.4	3.38	2.86	3.4	0.009	0.81	0.0	0.06	12.54	0.00	2.025	16.13	0.00	15.0	85.0	0.0	-5.75	0.35	0.87	6.32	3.5	0.003	0.65	0.0	0.05	15.35	0.00	2.534	7.68	2.38	8.5	91.5	0.0	-4.93	0.51	0.33	0.87	5.60	3258	405	3	0	0	0	0	logfile
✔	8J6S	36013	2024-12-29	2023-04-26	3.8	5.06	3.99	3.8	0.004	0.79	0.0	0.04	29.58	0.01	1.907	22.08	1.06	3.9	96.1	0.0	-0.40	0.83	0.73	1.29	3.9	0.005	1.04	0.0	0.04	29.86	0.00	1.961	21.50	5.29	2.9	97.1	0.0	0.22	0.74	0.88	0.84	0.57	10030	933	12	197	0	0	0	logfile
✔	8J6J	36006	2024-12-28	2023-04-26	2.8	2.60	2.74	2.9	0.004	0.62	0.0	0.04	14.73	0.00	2.098	8.22	0.21	2.6	97.4	0.0	1.70	0.45	0.63	1.61	2.8	0.003	1.01	1.0	0.04	16.30	0.00	2.347	8.50	3.23	3.6	96.4	0.0	0.73	1.06	0.61	0.78	2.60	8979	1151	6	0	1	0	0	logfile
✔	8oVK	17218	2024-12-27	2023-04-26	2.88	3.04	1.81	3.2	0.012	1.80	0.0	0.11	14.99	0.01	2.386	4.35	12.90	5.3	94.7	0.0	-1.83	0.53	0.84	5.68	3.1	0.003	0.67	0.0	0.05	18.10	0.00	2.546	9.87	4.84	2.4	97.6	0.0	-3.00	0.65	0.53	0.85	5.87	3060	400	10	0	0	0	0	logfile
✔	8oVX	17225	2024-12-27	2023-04-26	3.4	4.18	3.32	3.7	0.004	0.98	0.0	0.05	13.53	0.00	2.209	6.80	0.00	4.8	95.2	0.0	-1.04	0.80	0.70	1.05	3.8	0.003	0.76	0.0	0.04	15.90	0.00	2.398	14.36	2.85	4.5	95.5	0.0	0.75	0.64	0.81	0.72	1.11	6763	885	6	0	0	0	0	logfile
✔	8SN6	40614	2024-12-30	2023-04-26	3.7	3.89	3.71	3.8	0.004	0.57	0.0	0.03	25.93	0.00	2.084	7.45	0.11	2.5	97.5	0.0	1.99	0.85	0.86	1.06	3.8	0.004	0.66	0.0	0.04	26.30	0.00	2.108	8.20	1.52	3.1	96.9	0.0	2.06	1.39	0.84	0.86	0.70	14600	1076	14	294	2	0	0	logfile
✔	8SN8	40616	2024-12-30	2023-04-26	3.7	3.84	3.67	3.7	0.003	0.54	0.0	0.03	25.62	0.00	2.185	8.31	0.00	2.1	97.9	0.0	2.06	0.84	0.86	0.82	3.7	0.003	0.60	0.0	0.04	26.39	0.00	2.090	7.41	2.92	2.6	97.4	0.0	1.94	0.33	0.83	0.85	0.61	14600	1076	14	294	2	0	0	logfile
✔	8SN9	40617	2024-12-30	2023-04-26	3.9	3.90	3.78	3.8	0.003	0.55	0.0	0.03	25.89	0.00	2.063	7.72	0.00	2.5	97.5	0.0	1.88	0.83	0.84	0.89	3.8	0.003	0.61	0.0	0.04	26.28	0.00	2.119	7.65	1.19	2.1	97.9	0.0	1.78	1.38	0.83	0.84	0.52	14591	1076	14	294	2	0	0	logfile
✔	8J6P	36010	2024-12-29	2023-04-26	2.55	2.85	2.65	2.8	0.005	0.78	0.0	0.06	13.10	0.01	2.120	8.32	0.00	2.7	97.1	0.2	-0.04	0.63	0.76	3.32	2.8	0.003	0.58	0.0	0.04	15.88	0.00	2.530	7.94	1.21	2.6	97.4	0.0	1.03	0.53	0.60	0.79	4.03	9189	1151	6	0	5	1	0	logfile
✔	8J6Q	36011	2024-12-29	2023-04-26	2.6	2.86	2.68	2.8	0.005	0.69	0.0	0.05	13.24	0.00	2.191	7.12	0.00	2.7	97.3	0.0	0.40	0.69	0.81	4.26	2.8	0.003	0.57	0.0	0.04	15.50	0.00	2.491	7.67	1.51	3.0	97.0	0.0	0.87	0.39	0.68	0.84	4.14	9187	1151	6	0	5	1	0	logfile

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