Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HRX	34981	2024-12-27	2022-12-16	2.89	3.36	2.88	3.4	0.003	0.70	0.0	0.05	16.54	0.00	1.709	10.40	3.52	6.6	93.1	0.3	0.01	0.59	0.86	3.16	3.4	0.003	0.70	0.0	0.04	16.92	0.00	2.465	7.74	3.23	6.9	93.1	0.0	-0.16	0.32	0.59	0.86	2.63	6013	780	4	0	0	0	0	logfile
✔	8HS3	34984	2024-12-28	2022-12-16	3.14	3.64	3.25	3.6	0.005	0.75	0.0	0.05	16.98	0.01	2.141	7.14	0.36	5.6	94.4	0.0	-1.38	0.55	0.78	2.00	3.6	0.003	0.57	0.0	0.04	17.24	0.00	2.156	7.08	4.99	4.3	95.7	0.0	-0.33	0.32	0.53	0.76	2.04	8258	1124	5	0	0	0	0	logfile
✔	8HRY	34982	2024-12-27	2022-12-16	3.11	3.51	3.06	3.4	0.003	0.66	0.0	0.04	15.76	0.01	2.228	9.30	0.74	4.9	95.1	0.0	0.28	0.54	0.84	2.28	3.4	0.003	0.67	0.0	0.04	16.15	0.00	2.421	7.31	4.15	4.4	95.6	0.0	0.32	0.25	0.54	0.83	2.24	6016	782	4	0	0	0	0	logfile
✔	8C07	16356	2024-12-27	2022-12-16	3.3	2.75	3.20	2.2	0.004	0.94	0.0	0.05	16.63	0.01	2.288	4.36	0.38	8.1	91.9	0.0	-3.00	0.77	0.72	1.96	3.2	0.005	0.84	0.0	0.04	17.44	0.01	2.074	9.34	2.45	7.6	92.4	0.0	-1.08	0.93	0.78	0.74	1.90	4974	644	5	0	1	0	0	logfile
✔	8HR8	34963	2024-12-26	2022-12-15	3.3	3.38	3.32	3.3	0.002	0.46	1.0	0.04	15.29	0.00	2.116	9.71	0.02	3.0	97.0	0.0	-0.57	0.73	0.82	2.48	3.3	0.004	0.65	1.0	0.04	17.01	0.00	2.231	10.24	1.67	3.6	96.4	0.0	0.35	1.11	0.75	0.84	2.11	46688	5839	12	0	5	0	0	logfile
✔	8BZo	16344	2024-12-27	2022-12-15	3.5	3.72	3.51	3.7	0.005	0.73	1.0	0.05	16.41	0.01	2.231	13.28	0.99	5.6	94.2	0.2	-1.51	0.64	0.75	1.73	3.7	0.004	0.63	0.0	0.04	16.94	0.00	2.509	8.26	3.77	4.8	95.2	0.0	-0.41	0.33	0.62	0.74	1.57	4834	614	3	0	0	0	0	logfile
✔	8HRN	34979	2024-12-27	2022-12-15	3.9	4.18	3.98	4.0	0.005	0.91	0.0	0.05	17.07	0.01	2.080	24.49	0.95	3.4	96.6	0.0	-1.15	0.76	0.69	0.78	4.0	0.003	0.74	0.0	0.04	17.91	0.00	2.559	13.46	3.61	2.9	97.1	0.0	-0.20	1.18	0.76	0.69	0.49	4870	597	1	0	0	0	0	logfile
✔	8HRA	34965	2024-12-27	2022-12-15	3.76	3.86	3.86	3.8	0.003	0.50	0.0	0.04	15.37	0.00	2.207	6.03	0.02	4.4	95.6	0.0	-0.18	0.77	0.85	1.80	3.8	0.005	0.73	3.0	0.04	16.76	0.00	2.195	6.92	1.48	5.3	94.7	0.1	0.43	1.13	0.77	0.85	1.46	48146	5885	14	51	4	0	0	logfile
✔	8HRG	34972	2024-12-30	2022-12-15	4.5	4.83	4.51	4.6	0.003	0.70	0.0	0.05	12.33	0.00	2.127	11.61	0.00	7.0	92.7	0.3	-0.76	0.85	0.83	—	4.6	0.002	0.58	0.0	0.04	12.25	0.00	2.579	7.28	0.00	6.2	93.5	0.3	-0.91	0.54	0.85	0.83	—	61173	7854	21	0	0	0	0	logfile
✔	8FHT	29103	2024-12-27	2022-12-15	3.02	3.34	3.05	3.2	0.004	0.63	3.0	0.05	12.98	0.00	2.220	6.63	0.96	1.8	98.2	0.0	2.06	0.60	0.80	2.43	3.3	0.003	0.52	0.0	0.04	14.26	0.00	2.293	5.64	2.07	2.0	98.0	0.0	2.47	0.40	0.57	0.80	1.90	7006	936	4	0	4	0	0	logfile
✔	8C00	16347	2024-12-30	2022-12-15	2.9	3.49	—	2.8	0.007	0.82	0.0	0.06	20.24	0.01	2.091	3.29	0.84	3.4	96.3	0.3	-0.72	0.88	0.89	3.72	2.8	0.007	0.74	0.0	0.04	20.32	0.00	2.152	4.64	1.48	3.8	96.0	0.2	0.25	1.09	0.88	0.90	2.94	63117	4186	26	1425	0	0	0	logfile
✔	8BZY	16345	2024-12-27	2022-12-15	3.24	3.52	3.23	3.6	0.005	0.55	0.0	0.04	12.93	0.00	2.297	6.68	2.42	2.4	97.6	0.0	2.10	0.48	0.78	2.48	3.6	0.003	0.48	0.0	0.04	13.85	0.00	2.617	5.99	2.64	2.8	97.2	0.0	2.90	0.71	0.47	0.78	2.22	4311	549	3	0	2	0	0	logfile
✔	8C03	16354	2024-12-27	2022-12-15	3.89	4.09	3.71	4.1	0.006	0.67	0.0	0.04	13.12	0.00	1.232	8.74	3.06	2.8	97.2	0.0	2.75	0.56	0.76	1.69	4.1	0.004	0.72	0.0	0.04	16.34	0.00	2.561	14.37	4.46	1.4	98.6	0.0	2.69	1.49	0.56	0.78	1.33	3330	429	2	0	1	0	0	logfile
✔	8C02	16353	2024-12-27	2022-12-15	4.09	4.26	4.03	4.2	0.004	0.83	0.0	0.04	13.16	0.01	2.225	19.86	0.44	4.1	95.9	0.0	1.51	0.58	0.77	—	4.2	0.004	0.77	0.0	0.04	13.28	0.00	2.453	12.97	0.00	4.1	95.9	0.0	1.73	1.50	0.59	0.78	—	4242	549	2	0	0	0	0	logfile
✔	8HRM	34978	2024-12-27	2022-12-15	2.56	2.74	2.64	3.1	0.005	0.82	0.0	0.05	15.72	0.00	2.138	18.48	4.07	6.0	93.2	0.9	-1.82	0.70	0.79	4.89	3.1	0.007	0.88	0.0	0.05	15.88	0.00	2.555	9.46	4.36	4.9	95.1	0.0	-1.98	0.77	0.69	0.79	4.98	3567	476	8	0	0	19	0	logfile
✔	8HRK	34976	2024-12-27	2022-12-15	3.3	3.56	3.36	3.6	0.005	0.71	0.0	0.04	16.73	0.01	2.273	5.11	0.14	3.2	96.8	0.0	-1.80	0.67	0.74	1.69	3.6	0.002	0.56	0.0	0.04	17.45	0.00	2.571	2.80	2.31	3.2	96.8	0.0	-0.73	1.70	0.67	0.80	2.18	6412	791	2	0	0	0	0	logfile
✔	8HRL	34977	2024-12-27	2022-12-15	2.8	3.03	2.84	3.1	0.004	0.73	0.0	0.05	18.12	0.01	2.124	7.19	1.59	4.7	95.3	0.0	-1.16	0.64	0.73	1.48	3.1	0.002	0.57	0.0	0.04	18.36	0.00	2.592	3.52	2.02	2.8	97.2	0.0	0.04	0.49	0.61	0.72	1.41	6412	791	2	0	0	0	0	logfile
✔	8BYV	16334	2024-12-28	2022-12-14	2.89	3.45	3.02	2.9	0.003	0.57	0.0	0.04	22.87	0.00	2.158	15.00	0.88	4.2	95.8	0.0	-1.29	0.85	0.80	0.84	2.9	0.007	0.75	0.0	0.04	22.66	0.01	2.083	15.06	4.21	7.5	92.5	0.0	-1.24	1.08	0.85	0.83	1.25	51866	2391	21	1533	0	0	0	logfile
✔	8HR1	34956	2024-12-30	2022-12-14	3.02	2.38	2.94	3.0	0.010	0.80	0.0	0.05	26.09	0.01	2.255	8.44	0.16	3.1	96.9	0.0	-5.09	0.84	0.81	2.82	2.9	0.004	0.59	0.0	0.03	28.08	0.00	2.098	8.16	2.03	2.7	97.3	0.0	1.81	1.26	0.89	0.89	2.20	12110	765	11	294	0	0	0	logfile
✔	8HR5	34958	2024-12-28	2022-12-14	3.73	4.01	3.70	4.0	0.004	0.67	0.0	0.05	22.93	0.00	2.191	12.34	3.37	5.6	94.4	0.0	0.07	0.69	0.72	2.02	4.0	0.003	0.61	0.0	0.04	22.85	0.00	2.288	7.00	4.33	4.1	95.9	0.0	1.46	1.29	0.70	0.73	0.95	7595	711	5	123	0	0	0	logfile

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