Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8BYV	16334	2024-12-28	2022-12-14	2.89	3.45	3.02	2.9	0.003	0.57	0.0	0.04	22.87	0.00	2.158	15.00	0.88	4.2	95.8	0.0	-1.29	0.85	0.80	0.84	2.9	0.007	0.75	0.0	0.04	22.66	0.01	2.083	15.06	4.21	7.5	92.5	0.0	-1.24	1.08	0.85	0.83	1.25	51866	2391	21	1533	0	0	0	logfile
✔	8HQo	34952	2024-12-30	2022-12-13	3.2	3.45	3.81	4.0	0.006	0.79	0.0	0.05	13.20	0.01	0.888	6.45	0.00	2.6	97.4	0.0	-1.42	0.54	0.57	0.18	3.4	0.004	0.65	0.0	0.04	16.45	0.00	1.203	34.83	2.97	4.7	95.3	0.0	0.44	1.76	0.64	0.81	1.35	62613	7656	33	0	0	0	1902	logfile
✔	8HPU	34944	2024-12-29	2022-12-13	2.56	2.71	3.21	2.6	0.003	0.69	0.0	0.05	13.60	0.01	2.215	10.12	0.11	5.0	95.0	0.0	-0.21	0.72	0.75	3.07	2.6	0.004	0.72	0.0	0.05	16.23	0.01	2.315	8.83	1.61	4.9	95.1	0.0	0.00	0.93	0.74	0.78	3.03	8281	1080	6	0	1	0	0	logfile
✔	8HQN	34951	2024-12-28	2022-12-13	3.0	3.94	2.96	3.4	0.006	1.05	0.0	0.06	15.25	0.01	2.253	8.80	0.54	4.4	95.6	0.0	-1.62	0.75	0.78	3.18	3.4	0.002	0.59	0.0	0.04	15.83	0.00	2.419	7.86	1.30	3.3	96.6	0.1	0.06	0.41	0.77	0.83	3.11	8605	1107	6	0	1	0	0	logfile
✔	8BYN	16329	2024-12-27	2022-12-13	2.6	2.60	2.45	2.5	0.009	0.79	0.0	0.05	15.40	0.00	2.417	6.44	0.00	1.4	98.6	0.0	-1.93	0.45	0.92	7.24	2.5	0.005	0.58	0.0	0.05	18.63	0.00	2.614	3.08	1.01	1.4	98.6	0.0	-1.91	0.41	0.43	0.93	6.51	3564	450	10	0	6	0	0	logfile
✔	8HQC	34947	2024-12-28	2022-12-13	3.89	4.15	3.91	4.1	0.003	0.69	0.0	0.04	11.77	0.01	2.223	6.60	0.12	4.1	95.9	0.0	0.00	0.73	0.80	2.24	4.1	0.004	0.74	0.0	0.04	14.75	0.00	2.438	7.08	3.38	4.4	95.6	0.0	0.03	1.05	0.74	0.82	1.86	8538	1186	6	0	0	0	0	logfile
✔	8HPT	34943	2024-12-28	2022-12-13	3.39	3.64	3.38	3.7	0.003	0.60	0.0	0.04	14.89	0.01	2.212	6.51	0.40	3.4	96.6	0.0	0.29	0.72	0.81	2.10	3.7	0.004	0.63	0.0	0.04	15.82	0.00	2.565	5.00	4.28	4.7	95.3	0.0	0.48	0.37	0.73	0.83	2.36	7897	1094	7	0	1	0	0	logfile
✔	8HPV	34945	2024-12-28	2022-12-13	2.65	2.82	2.71	2.7	0.004	0.67	0.0	0.05	13.10	0.01	2.124	7.38	0.04	3.9	96.1	0.0	0.25	0.65	0.69	2.51	2.7	0.003	0.63	0.0	0.05	15.05	0.00	2.369	7.14	1.07	3.2	96.8	0.0	0.01	0.40	0.67	0.73	2.20	44640	5781	18	0	6	0	0	logfile
✔	8BYi	16326	2024-12-30	2022-12-13	4.1	3.68	3.94	4.0	0.009	0.72	0.0	0.21	12.07	0.00	2.132	24.08	0.00	2.3	97.7	0.0	1.89	0.61	0.78	—	3.7	0.003	0.62	0.0	0.04	11.65	0.00	2.395	11.69	0.00	2.8	97.2	0.0	-0.33	1.13	0.63	0.80	—	13031	1600	15	0	12	9	0	logfile
✔	8BYL	16327	2024-12-27	2022-12-13	3.5	3.68	3.45	3.7	0.004	0.66	0.0	0.05	16.83	0.00	2.304	9.11	1.05	4.8	95.2	0.0	-1.39	0.61	0.77	1.24	3.7	0.003	0.64	0.0	0.04	17.11	0.00	2.526	7.24	4.63	4.5	95.5	0.0	-1.22	0.35	0.61	0.75	1.34	4378	571	4	0	0	0	0	logfile
✔	8HQE	34948	2024-12-28	2022-12-13	2.97	4.06	2.99	3.1	0.004	0.83	0.0	0.05	15.69	0.01	2.202	9.02	0.31	4.6	95.4	0.0	-1.77	0.75	0.80	3.13	3.2	0.003	0.64	0.0	0.04	16.21	0.00	2.463	8.68	1.15	3.8	96.2	0.0	-0.10	0.36	0.84	0.91	2.99	8903	1147	5	0	0	0	0	logfile
✔	8HQM	34950	2024-12-28	2022-12-13	2.95	4.20	3.00	3.1	0.005	0.90	0.0	0.05	16.06	0.01	2.241	10.27	0.43	5.0	95.0	0.0	-1.84	0.81	0.84	3.87	3.1	0.004	0.61	0.0	0.04	16.54	0.00	2.573	10.63	1.29	3.6	96.4	0.0	-0.58	0.28	0.87	0.92	3.41	8618	1104	6	0	1	0	0	logfile
✔	8HPF	34931	2024-12-29	2022-12-12	2.34	2.45	2.94	2.4	0.003	0.68	0.0	0.04	17.78	0.01	2.244	10.57	7.09	5.0	95.0	0.0	-0.06	0.71	0.75	2.92	2.4	0.003	0.70	0.0	0.05	17.41	0.01	2.453	9.64	4.19	4.8	95.2	0.0	-0.16	0.32	0.73	0.79	2.58	8268	1079	6	0	1	0	0	logfile
✔	8BYA	16325	2024-12-28	2022-12-12	3.38	3.67	3.49	3.7	0.005	0.80	0.0	0.05	15.66	0.00	1.446	13.76	0.88	5.0	94.9	0.1	-1.67	0.69	0.73	1.25	3.7	0.003	0.69	0.0	0.04	16.34	0.00	2.395	8.47	3.51	5.0	95.0	0.0	-1.25	0.42	0.70	0.75	1.19	8389	1145	7	0	0	0	0	logfile
✔	8HPL	34932	2024-12-30	2022-12-12	4.29	4.66	4.34	4.3	0.012	1.78	1.0	0.09	12.90	0.01	2.269	5.50	0.00	8.9	91.1	0.0	-2.47	0.70	0.80	—	4.3	0.003	0.70	0.0	0.04	12.20	0.00	2.461	7.88	0.00	4.2	95.8	0.0	-0.17	0.79	0.70	0.80	—	12013	1757	8	0	4	0	0	logfile
✔	8FGW	29073	2024-12-26	2022-12-12	3.7	3.39	2.51	2.0	0.003	0.54	0.0	0.04	12.36	0.00	2.078	10.57	0.00	4.2	95.8	0.0	0.55	0.83	0.76	1.74	2.0	0.003	0.56	0.0	0.04	14.20	0.00	2.488	8.71	0.92	3.9	96.1	0.0	0.79	0.30	0.84	0.78	1.49	43527	5564	9	0	5	0	0	logfile
✔	8HPQ	34940	2024-12-28	2022-12-12	2.85	3.02	2.88	2.9	0.013	1.12	10.0	0.06	13.79	0.01	1.412	9.85	0.64	3.8	96.2	0.1	-0.06	0.52	0.38	1.59	2.9	0.004	0.71	2.0	0.05	15.80	0.01	2.333	9.50	1.92	3.7	96.3	0.0	-0.17	1.20	0.71	0.77	2.18	44355	5745	18	0	3	0	0	logfile
✔	8HP9	34928	2024-12-26	2022-12-12	2.75	2.94	2.83	2.8	0.009	0.80	0.0	0.05	13.47	0.01	2.089	12.97	0.00	7.1	92.8	0.1	-0.47	0.66	0.68	2.51	2.8	0.004	0.67	0.0	0.05	15.23	0.00	2.438	9.47	1.26	6.4	93.5	0.0	-0.28	0.35	0.72	0.79	2.20	45516	5837	18	0	32	0	0	logfile
✔	8HPS	34942	2024-12-30	2022-12-12	3.51	3.85	3.72	3.8	0.012	1.77	6.0	0.10	13.07	0.01	2.209	4.87	0.38	3.9	96.1	0.0	-1.71	0.65	0.81	2.79	3.8	0.003	0.70	0.0	0.04	15.39	0.00	2.040	8.35	2.68	2.5	97.5	0.0	0.90	1.10	0.65	0.82	1.39	12984	1722	8	0	6	0	0	logfile
✔	8HPM	34933	2024-12-30	2022-12-12	3.82	4.17	3.97	4.0	0.012	1.82	5.0	0.10	12.98	0.01	2.225	7.78	0.65	6.4	93.5	0.1	-2.52	0.67	0.78	1.71	4.0	0.003	0.79	0.0	0.04	14.95	0.00	2.385	11.35	2.44	4.1	95.9	0.0	-0.55	1.20	0.67	0.79	1.77	12803	1758	8	0	4	0	0	logfile

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