Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HPQ	34940	2024-12-28	2022-12-12	2.85	3.02	2.88	2.9	0.013	1.12	10.0	0.06	13.79	0.01	1.412	9.85	0.64	3.8	96.2	0.1	-0.06	0.52	0.38	1.59	2.9	0.004	0.71	2.0	0.05	15.80	0.01	2.333	9.50	1.92	3.7	96.3	0.0	-0.17	1.20	0.71	0.77	2.18	44355	5745	18	0	3	0	0	logfile
✔	8HPR	34941	2024-12-30	2022-12-12	3.75	4.12	3.94	4.0	0.012	1.78	1.0	0.10	13.56	0.01	2.201	7.88	0.64	5.4	94.5	0.1	-2.19	0.67	0.78	1.77	4.0	0.004	0.94	1.0	0.05	14.82	0.00	2.073	11.04	2.24	3.4	96.5	0.1	0.14	0.86	0.68	0.79	1.65	12645	1696	8	0	6	0	0	logfile
✔	8BY8	16324	2024-12-29	2022-12-12	2.5	3.35	2.68	3.1	0.002	0.50	0.0	0.04	13.68	0.00	1.849	5.96	2.50	3.5	96.4	0.1	0.08	0.60	0.19	2.90	3.1	0.003	0.55	0.0	0.04	14.52	0.00	2.343	5.22	1.30	3.8	96.1	0.0	0.35	0.99	0.76	0.73	3.00	38783	2568	2	0	0	0	19223	logfile
✔	8HP9	34928	2024-12-26	2022-12-12	2.75	2.94	2.83	2.8	0.009	0.80	0.0	0.05	13.47	0.01	2.089	12.97	0.00	7.1	92.8	0.1	-0.47	0.66	0.68	2.51	2.8	0.004	0.67	0.0	0.05	15.23	0.00	2.438	9.47	1.26	6.4	93.5	0.0	-0.28	0.35	0.72	0.79	2.20	45516	5837	18	0	32	0	0	logfile
✔	8FFY	29070	2024-12-28	2022-12-11	3.6	3.59	3.60	3.8	0.008	0.72	0.0	0.05	19.05	0.00	2.125	4.09	0.00	0.3	99.7	0.0	-0.66	0.60	0.63	1.56	3.8	0.003	0.57	0.0	0.04	19.83	0.00	2.574	6.99	3.24	2.6	97.4	0.0	0.35	0.80	0.74	0.80	1.51	7442	770	5	61	2	0	0	logfile
✔	8HoY	34927	2024-12-30	2022-12-11	2.76	2.99	2.88	3.1	0.002	0.46	0.0	0.04	13.25	0.00	2.189	9.49	0.00	7.4	92.6	0.1	-0.64	0.51	0.54	0.86	3.0	0.004	0.73	0.0	0.05	16.62	0.01	2.380	12.85	3.74	9.4	90.5	0.1	-1.75	0.79	0.55	0.62	0.94	13454	1650	3	0	0	0	0	logfile
✔	8Ho9	34923	2024-12-30	2022-12-09	2.25	2.64	2.25	2.6	0.009	0.69	2.0	0.06	17.35	0.00	1.947	2.88	1.23	3.6	96.4	0.0	0.41	0.68	0.86	5.45	2.6	0.003	0.58	0.0	0.05	17.42	0.00	2.576	2.18	2.02	3.6	96.4	0.0	0.46	0.19	0.75	0.89	5.38	13463	1622	4	0	0	347	0	logfile
✔	8HoB	34924	2024-12-30	2022-12-09	2.19	2.69	2.23	2.6	0.008	0.75	4.0	0.07	17.24	0.00	2.230	3.31	1.23	3.1	96.9	0.0	0.68	0.66	0.85	5.42	2.6	0.003	0.52	0.0	0.05	17.29	0.00	2.561	2.96	1.08	3.0	97.0	0.0	0.78	0.16	0.73	0.89	5.59	13449	1622	4	0	0	333	0	logfile
✔	8Ho7	34921	2024-12-30	2022-12-09	2.59	2.93	2.60	2.9	0.002	0.53	0.0	0.04	17.79	0.00	2.118	4.39	2.31	3.6	96.4	0.0	0.25	0.71	0.91	5.15	2.9	0.003	0.56	0.0	0.05	17.88	0.00	2.562	3.62	2.16	3.8	96.2	0.0	0.35	0.18	0.64	0.88	5.13	13227	1620	4	0	0	112	0	logfile
✔	8Ho8	34922	2024-12-30	2022-12-09	2.24	2.63	2.22	2.6	0.003	0.59	0.0	0.05	17.23	0.00	2.278	2.79	1.30	3.3	96.7	0.0	0.44	0.73	0.89	5.92	2.5	0.003	0.58	0.0	0.05	17.29	0.00	2.531	2.33	1.95	3.5	96.5	0.0	0.54	0.15	0.77	0.90	5.66	13454	1618	6	0	4	309	0	logfile
✔	8HNU	34918	2024-12-31	2022-12-08	2.28	2.97	2.29	2.7	0.003	0.45	0.0	0.04	16.20	0.00	2.170	3.11	1.52	2.0	97.9	0.1	1.07	0.85	0.90	4.54	2.7	0.004	0.91	2.0	0.04	16.20	0.00	2.142	2.41	0.58	2.2	97.7	0.1	0.91	0.16	0.85	0.91	4.82	16178	1970	6	0	4	316	0	logfile
✔	8HNV	34919	2024-12-28	2022-12-08	3.1	2.71	3.05	2.9	0.002	0.57	0.0	0.04	20.86	0.00	2.103	11.63	0.00	4.3	95.7	0.0	-0.35	0.57	0.66	1.19	2.9	0.004	0.63	0.0	0.04	21.80	0.00	2.536	10.87	2.65	6.4	93.6	0.0	-0.36	1.54	0.60	0.72	1.05	9196	832	5	128	0	0	0	logfile
✔	8BXB	16314	2024-12-30	2022-12-08	3.9	4.23	3.84	4.2	0.004	0.78	0.0	0.05	13.50	0.01	2.256	7.26	5.55	3.9	96.1	0.1	-2.59	0.68	0.77	1.32	4.1	0.003	0.68	0.0	0.04	14.56	0.00	2.484	10.00	3.57	4.7	95.3	0.0	-0.83	0.86	0.66	0.80	1.29	12547	1630	14	0	5	4	0	logfile
✔	8HNN	34917	2024-12-27	2022-12-08	3.6	3.86	3.60	3.8	0.004	0.69	0.0	0.19	17.32	0.00	2.206	7.32	0.00	6.2	93.8	0.0	0.62	0.53	0.77	1.74	3.8	0.003	0.69	0.0	0.04	16.91	0.00	2.568	6.18	3.85	5.2	94.8	0.0	1.00	0.52	0.56	0.80	0.97	3063	392	3	0	2	0	0	logfile
✔	8BXE	16316	2024-12-30	2022-12-08	3.9	4.10	3.90	4.1	0.003	0.72	0.0	0.05	12.69	0.00	2.220	12.46	0.00	4.6	95.4	0.0	-1.05	0.64	0.79	1.63	4.1	0.003	0.79	0.0	0.05	15.74	0.00	2.251	11.37	3.01	4.7	95.3	0.0	-0.67	0.49	0.64	0.80	1.07	12550	1630	14	0	5	4	0	logfile
✔	8BX7	16311	2024-12-31	2022-12-08	2.76	3.44	2.81	3.3	0.003	0.66	0.0	0.04	15.28	0.00	2.209	10.59	1.92	5.3	94.6	0.0	0.66	0.72	0.77	2.03	3.3	0.003	0.60	0.0	0.04	16.05	0.00	2.419	7.71	2.50	4.8	95.1	0.0	1.48	0.29	0.70	0.76	1.72	15637	2059	5	0	0	0	0	logfile
✔	8HNM	34916	2024-12-28	2022-12-08	2.94	3.31	2.90	3.2	0.003	0.60	0.0	0.04	15.74	0.00	2.223	8.44	0.53	5.0	95.0	0.0	0.38	0.75	0.86	2.12	3.2	0.003	0.63	0.0	0.04	16.38	0.00	2.535	4.90	2.65	5.1	94.9	0.0	0.47	0.34	0.77	0.88	2.07	8784	1117	6	0	3	0	0	logfile
✔	8HNK	34914	2024-12-29	2022-12-08	3.01	3.38	2.91	3.2	0.004	0.61	0.0	0.04	13.49	0.00	2.176	8.10	0.00	4.3	95.7	0.0	0.15	0.80	0.87	3.03	3.2	0.004	1.04	2.0	0.05	15.26	0.01	2.110	4.84	1.46	3.9	96.0	0.1	0.75	0.94	0.81	0.90	2.87	9492	1210	7	0	2	0	0	logfile
✔	8HNB	34909	2024-12-27	2022-12-07	3.53	4.14	3.49	4.0	0.007	1.35	2.0	0.08	14.65	0.02	2.382	14.25	2.09	2.3	97.7	0.0	-0.66	0.58	0.74	1.11	4.1	0.003	0.78	0.0	0.04	14.45	0.00	2.595	8.83	2.61	2.2	97.8	0.0	1.40	1.63	0.47	0.70	1.27	4083	562	3	0	3	0	0	logfile
✔	8BWo	16292	2024-12-29	2022-12-07	3.2	3.36	3.15	3.4	0.005	1.11	0.0	0.05	13.92	0.01	1.900	2.44	0.47	4.2	95.8	0.0	-1.54	0.58	0.79	3.27	3.4	0.005	0.66	0.0	0.04	16.43	0.00	1.892	7.08	2.28	2.1	97.9	0.0	0.90	1.80	0.68	0.86	2.46	9712	1211	2	0	4	0	0	logfile

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