Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8BWR	16295	2024-12-29	2022-12-07	4.0	4.17	3.97	4.1	0.010	0.93	0.0	0.05	13.67	0.01	2.203	7.58	0.96	3.7	96.3	0.0	-1.63	0.65	0.78	—	4.1	0.003	0.72	0.0	0.04	16.20	0.00	2.576	11.40	2.59	2.4	97.6	0.0	1.52	1.91	0.70	0.80	—	9570	1195	2	0	1	0	0	logfile
✔	8FF2	29036	2024-12-27	2022-12-07	2.87	2.65	2.28	3.2	0.005	0.43	0.0	0.04	10.64	0.00	2.540	4.96	0.00	0.0	100.0	0.0	-2.01	0.51	0.80	6.45	3.1	0.005	0.70	0.0	0.05	17.50	0.00	2.443	7.08	2.41	3.9	96.1	0.0	-2.83	2.42	0.52	0.82	6.11	5650	380	10	0	0	0	2740	logfile
✔	8BWo	16292	2024-12-29	2022-12-07	3.2	3.36	3.15	3.4	0.005	1.11	0.0	0.05	13.92	0.01	1.900	2.44	0.47	4.2	95.8	0.0	-1.54	0.58	0.79	3.27	3.4	0.005	0.66	0.0	0.04	16.43	0.00	1.892	7.08	2.28	2.1	97.9	0.0	0.90	1.80	0.68	0.86	2.46	9712	1211	2	0	4	0	0	logfile
✔	8HND	34911	2024-12-27	2022-12-07	3.19	3.62	3.32	3.6	0.008	1.22	4.0	0.07	14.37	0.02	2.231	14.77	0.65	4.5	95.5	0.0	-2.74	0.50	0.73	2.07	3.6	0.003	0.60	0.0	0.04	15.32	0.00	2.568	7.56	3.45	2.9	97.1	0.0	1.39	1.93	0.41	0.66	2.27	4370	560	3	0	4	0	0	logfile
✔	8BX5	16308	2024-12-30	2022-12-07	4.2	4.41	4.00	4.3	0.003	0.78	1.0	0.06	14.22	0.01	2.218	14.11	0.63	3.9	96.1	0.0	-0.69	0.60	0.73	—	4.3	0.003	0.75	0.0	0.05	13.30	0.00	2.316	12.82	0.16	3.7	96.1	0.1	-0.49	2.12	0.63	0.76	—	12527	1630	13	0	4	4	0	logfile
✔	8FF4	29039	2024-12-28	2022-12-07	3.6	3.84	—	3.5	0.003	0.64	0.0	0.04	19.46	0.00	1.983	15.63	0.71	5.8	93.6	0.6	0.08	0.87	0.80	1.80	3.5	0.003	0.60	0.0	0.04	19.42	0.00	1.932	10.26	2.42	5.3	94.4	0.3	0.61	0.46	0.89	0.83	1.69	50322	5652	30	200	14	0	0	logfile
✔	8HNC	34910	2024-12-27	2022-12-07	3.73	3.95	3.71	4.0	0.006	1.01	2.0	0.08	15.07	0.02	2.079	14.23	0.49	3.9	96.1	0.0	-2.79	0.58	0.82	2.00	3.9	0.003	0.66	0.0	0.04	14.73	0.00	2.506	7.89	2.92	2.3	97.7	0.0	1.38	1.31	0.56	0.82	1.36	4272	570	3	0	4	0	0	logfile
✔	8BWP	16293	2024-12-29	2022-12-07	3.6	3.85	3.55	3.8	0.011	0.90	1.0	0.06	12.54	0.01	2.213	4.13	0.48	2.9	97.1	0.0	-1.51	0.68	0.83	2.86	3.8	0.004	0.63	1.0	0.04	15.42	0.00	2.479	7.48	3.07	2.3	97.7	0.0	1.36	1.11	0.69	0.80	1.58	9578	1195	2	0	1	0	0	logfile
✔	8BWQ	16294	2024-12-29	2022-12-07	3.9	4.13	3.88	4.0	0.009	0.89	0.0	0.05	13.09	0.01	2.238	4.90	0.00	3.0	97.0	0.0	-1.27	0.70	0.84	2.39	4.0	0.004	0.73	0.0	0.04	16.14	0.00	2.446	10.52	2.88	2.4	97.6	0.0	1.51	1.85	0.70	0.83	1.27	9576	1195	2	0	1	0	0	logfile
✔	8FEL	29032	2024-12-28	2022-12-06	4.64	5.02	4.40	4.5	0.001	0.35	0.0	0.04	14.88	0.00	2.030	6.97	1.98	3.8	96.2	0.0	-0.24	0.70	0.37	—	4.5	0.002	0.58	0.0	0.04	12.97	0.00	2.425	9.82	0.00	6.1	93.9	0.0	-0.77	2.75	0.75	0.46	—	9201	1191	3	0	0	0	0	logfile
✔	8HN1	34906	2024-12-27	2022-12-06	2.9	3.16	2.84	3.1	0.003	0.58	0.0	0.04	12.06	0.00	1.991	8.56	0.00	4.0	96.0	0.0	-0.68	0.61	0.79	2.24	3.1	0.004	0.63	0.0	0.04	15.03	0.00	2.500	6.31	2.59	4.7	95.3	0.0	0.61	0.42	0.57	0.79	2.45	3560	456	3	0	0	0	0	logfile
✔	8FEH	29027	2024-12-27	2022-12-06	3.28	4.31	3.36	3.4	0.008	1.02	0.0	0.07	14.17	0.01	2.317	7.23	1.83	7.1	92.9	0.0	-3.45	0.45	0.76	1.53	3.5	0.003	0.64	0.0	0.04	15.12	0.00	2.545	9.73	1.38	4.5	95.5	0.0	-1.57	2.58	0.47	0.88	2.31	1993	268	1	0	0	0	0	logfile
✔	8FEX	29033	2024-12-28	2022-12-06	3.07	3.30	3.12	3.4	0.003	0.46	0.0	0.04	13.44	0.00	1.911	7.41	0.00	5.8	94.2	0.0	-0.93	0.60	0.73	2.45	3.4	0.003	0.53	0.0	0.04	15.69	0.00	2.483	6.72	2.13	5.6	94.2	0.1	-0.51	0.35	0.59	0.73	1.75	7302	891	2	0	0	0	0	logfile
✔	8FEi	29028	2024-12-27	2022-12-06	3.0	4.02	3.08	3.6	0.007	0.91	0.0	0.05	14.00	0.00	1.541	5.78	0.18	5.1	94.9	0.0	-3.98	0.90	0.84	3.15	3.6	0.003	0.58	0.0	0.04	14.65	0.00	2.009	6.46	1.07	2.8	97.2	0.0	0.00	0.47	0.91	0.85	2.68	5189	674	2	0	2	0	0	logfile
✔	8FEJ	29029	2024-12-29	2022-12-06	4.64	5.33	4.68	4.6	0.001	0.37	0.0	0.04	13.97	0.00	2.030	6.27	4.30	2.9	96.9	0.2	0.48	0.88	0.69	—	4.6	0.002	0.56	0.0	0.04	12.58	0.00	2.425	7.92	0.00	6.2	93.6	0.2	-0.58	1.70	0.91	0.74	—	10464	1368	3	0	0	0	0	logfile
✔	8BW0	16279	2024-12-27	2022-12-06	3.11	3.43	3.06	3.4	0.005	0.76	0.0	0.05	19.99	0.01	2.189	10.70	0.00	5.1	94.9	0.0	0.61	0.75	0.72	1.84	3.4	0.006	0.88	0.0	0.05	14.92	0.01	2.333	13.09	3.24	6.9	93.1	0.0	0.01	0.53	0.78	0.78	2.64	3201	398	7	0	13	0	0	logfile
✔	8HMY	34904	2024-12-30	2022-12-06	2.94	3.24	3.07	3.2	0.005	0.85	3.0	0.05	19.41	0.01	2.137	7.76	7.49	5.5	94.3	0.2	-2.35	0.65	0.74	2.32	3.2	0.003	0.61	0.0	0.04	19.75	0.00	2.191	6.59	5.50	3.7	96.2	0.1	0.41	1.19	0.68	0.80	2.11	11675	1368	7	90	6	0	0	logfile
✔	8BW7	16280	2024-12-27	2022-12-06	3.53	4.04	3.62	4.0	0.003	0.62	0.0	0.04	17.61	0.00	2.164	11.00	0.00	3.3	96.7	0.0	0.80	0.55	0.72	1.22	4.0	0.003	0.61	0.0	0.04	18.06	0.00	2.534	9.11	4.52	3.1	96.9	0.0	0.94	0.27	0.57	0.72	1.45	4748	612	3	0	2	0	0	logfile
✔	8BVT	16271	2024-12-27	2022-12-06	3.94	4.42	4.04	4.3	0.009	1.22	0.0	0.05	17.64	0.01	2.157	14.86	0.23	4.2	95.8	0.0	0.33	0.60	0.78	0.48	4.3	0.003	0.84	0.0	0.04	17.62	0.00	2.579	10.44	5.59	4.6	95.4	0.0	0.62	0.31	0.60	0.78	0.48	4517	623	3	0	1	0	0	logfile
✔	8HMV	34903	2024-12-28	2022-12-05	2.91	3.27	3.06	3.2	0.005	0.63	0.0	0.04	13.38	0.00	2.150	4.96	0.00	3.3	96.7	0.0	-0.72	0.67	0.86	4.20	3.2	0.003	0.51	0.0	0.04	15.55	0.00	2.548	3.28	1.35	2.4	97.6	0.0	0.81	0.38	0.65	0.87	3.55	8127	1022	5	0	0	0	0	logfile

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