Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HFQ	34724	2024-12-28	2022-11-11	2.64	2.27	2.58	2.5	0.012	1.31	1.0	0.06	14.44	0.01	1.919	13.48	0.45	1.7	98.2	0.1	-0.95	0.76	0.80	3.80	2.4	0.005	0.78	2.0	0.04	16.99	0.01	1.840	11.34	2.21	1.5	98.5	0.0	2.03	1.61	0.79	0.84	4.00	54193	6851	76	0	54	0	0	logfile
✔	8F54	28860	2024-12-30	2022-11-11	2.5	2.67	2.56	2.7	0.003	0.45	0.0	0.03	11.59	0.00	2.491	0.57	0.00	0.0	100.0	0.0	3.06	0.68	0.76	3.44	2.7	0.003	0.53	0.0	0.03	18.05	0.01	2.508	2.09	1.97	1.3	98.7	0.0	3.80	1.38	0.66	0.80	3.41	66960	4020	60	0	0	0	33840	logfile
✔	8F41	28849	2024-12-29	2022-11-10	3.9	3.12	3.87	3.3	0.005	0.93	0.0	0.05	13.03	0.01	1.432	21.12	0.39	9.4	90.6	0.0	-1.29	0.54	0.55	0.90	3.1	0.004	0.77	0.0	0.05	16.57	0.01	2.417	10.07	3.01	8.1	91.9	0.0	-0.89	1.90	0.60	0.70	1.44	57846	7464	18	0	6	0	0	logfile
✔	8BMo	16119	2024-12-29	2022-11-10	3.4	3.37	3.39	3.2	0.004	0.55	0.0	0.04	16.09	0.00	1.931	11.77	0.13	2.0	98.0	0.0	1.29	0.84	0.85	2.70	3.2	0.003	0.61	0.0	0.04	16.50	0.00	1.977	10.72	1.71	2.1	97.9	0.0	1.27	0.32	0.85	0.86	2.51	59346	8008	35	0	28	0	0	logfile
✔	8BLQ	16113	2024-12-28	2022-11-10	3.97	5.74	4.01	3.9	0.002	0.55	0.0	0.04	12.20	0.00	2.201	11.99	0.10	4.9	95.1	0.0	-3.81	0.92	0.71	1.20	3.9	0.003	0.65	0.0	0.04	14.19	0.00	2.563	14.36	1.56	6.1	93.9	0.0	-1.83	1.43	0.94	0.80	1.25	9210	1220	5	0	0	0	0	logfile
✔	8BMP	16120	2024-12-28	2022-11-10	3.2	3.48	3.25	3.5	0.003	0.64	0.0	0.04	14.23	0.00	2.246	6.03	0.00	2.5	97.5	0.0	0.66	0.69	0.84	3.03	3.5	0.003	0.58	0.0	0.04	15.29	0.00	2.491	5.02	0.48	2.5	97.5	0.0	1.42	0.28	0.63	0.80	2.30	7794	989	6	0	3	0	0	logfile
✔	8BMR	16122	2024-12-27	2022-11-10	3.8	4.05	3.86	4.0	0.003	0.61	0.0	0.04	13.55	0.00	2.228	8.06	0.00	5.0	95.0	0.0	-0.04	0.69	0.82	1.29	4.0	0.003	0.66	0.0	0.04	16.02	0.00	2.529	7.35	2.33	3.9	96.1	0.0	0.65	0.37	0.69	0.82	1.12	6330	808	3	0	0	0	0	logfile
✔	8BLW	16114	2024-12-29	2022-11-10	3.22	3.93	3.33	3.8	0.005	1.05	0.0	0.06	14.23	0.01	2.257	6.97	0.00	9.3	90.7	0.0	-1.93	0.70	0.79	3.04	3.8	0.003	0.63	0.0	0.05	15.05	0.00	2.507	10.38	2.35	7.8	92.2	0.0	-1.66	1.02	0.63	0.73	2.52	9883	1250	3	0	1	0	0	logfile
✔	8BMS	16124	2024-12-27	2022-11-10	2.6	2.85	2.63	3.0	0.003	0.52	0.0	0.04	14.83	0.00	1.956	6.11	0.00	2.2	97.8	0.0	0.83	0.63	0.84	3.85	3.0	0.003	0.55	0.0	0.04	17.14	0.00	1.877	5.65	1.86	2.0	98.0	0.0	1.27	0.88	0.62	0.84	3.79	6570	822	8	0	4	72	0	logfile
✔	8BLP	16112	2024-12-29	2022-11-10	2.6	2.86	2.66	2.9	0.010	1.37	0.0	0.05	19.49	0.01	2.208	7.09	0.35	4.8	95.2	0.0	-1.57	0.67	0.86	4.68	2.9	0.003	0.56	0.0	0.04	15.30	0.00	2.623	5.98	1.96	2.2	97.8	0.0	2.52	1.20	0.65	0.87	4.08	9378	1065	9	0	66	66	0	logfile
✔	8HFF	34719	2024-12-27	2022-11-10	2.86	3.35	2.95	3.3	0.004	0.54	0.0	0.04	16.02	0.00	2.142	6.04	1.08	2.8	97.2	0.0	1.96	0.54	0.78	3.07	3.3	0.003	0.52	0.0	0.04	16.05	0.00	2.524	4.78	1.74	2.4	97.6	0.0	2.06	1.13	0.49	0.75	2.57	4399	547	2	0	2	2	0	logfile
✔	8BLY	16115	2024-12-29	2022-11-10	3.2	3.21	3.09	3.1	0.002	0.47	0.0	0.04	16.45	0.00	1.971	10.01	0.18	1.5	98.5	0.0	1.29	0.83	0.86	2.22	3.1	0.003	0.49	0.0	0.04	16.30	0.00	1.922	8.18	1.86	1.4	98.6	0.0	1.44	0.28	0.84	0.87	2.10	54334	7336	28	0	28	0	0	logfile
✔	8BM0	16116	2024-12-29	2022-11-10	3.4	3.46	3.31	3.1	0.003	0.64	0.0	0.04	16.35	0.00	2.002	9.99	0.11	1.6	98.4	0.0	0.68	0.85	0.84	2.49	3.1	0.004	0.61	0.0	0.04	16.45	0.00	1.845	11.91	1.87	1.8	98.2	0.0	1.28	1.04	0.86	0.86	2.43	59394	8008	35	0	42	0	0	logfile
✔	8HFE	34718	2024-12-27	2022-11-10	2.5	2.87	2.58	2.8	0.005	0.66	0.0	0.04	14.85	0.00	2.082	5.59	1.08	2.6	97.2	0.2	1.37	0.63	0.84	3.53	2.8	0.003	0.54	0.0	0.04	15.30	0.00	2.527	3.54	3.24	2.6	97.2	0.2	2.05	1.13	0.64	0.85	3.42	4413	548	2	0	1	22	0	logfile
✔	8BM1	16117	2024-12-30	2022-11-10	2.7	2.71	2.68	2.6	0.004	0.73	0.0	0.05	15.95	0.00	1.948	13.36	0.81	1.8	98.1	0.1	1.10	0.82	0.83	2.93	2.6	0.003	0.59	0.0	0.04	16.65	0.00	2.137	9.25	1.54	1.1	98.9	0.0	1.54	0.40	0.84	0.87	2.59	61416	8008	56	0	42	2056	0	logfile
✔	8BMT	16125	2024-12-31	2022-11-10	2.5	2.69	2.49	2.5	0.003	0.62	0.0	0.05	15.40	0.00	1.922	10.73	1.12	1.8	98.2	0.0	1.86	0.83	0.85	3.16	2.6	0.004	0.71	0.0	0.05	16.37	0.00	1.978	11.39	0.98	1.5	98.5	0.0	1.31	1.15	0.84	0.87	2.86	65711	8680	56	0	42	1339	0	logfile
✔	8HFG	34720	2024-12-27	2022-11-10	3.0	3.32	3.05	3.3	0.006	0.80	3.0	0.04	15.71	0.01	2.067	5.60	1.96	3.2	96.7	0.2	1.59	0.54	0.67	1.17	3.3	0.004	0.61	0.0	0.04	16.71	0.00	2.601	8.00	3.04	2.6	97.4	0.0	1.62	1.67	0.65	0.82	3.15	4394	545	2	0	3	5	0	logfile
✔	8HFC	34717	2024-12-27	2022-11-10	3.5	3.66	3.42	3.7	0.007	0.67	0.0	0.05	18.01	0.00	2.164	9.17	3.88	6.5	93.3	0.2	-2.90	0.68	0.82	2.21	3.7	0.003	0.64	0.0	0.04	17.73	0.00	2.503	4.90	2.28	3.8	96.2	0.0	0.49	1.19	0.64	0.79	1.91	4007	498	3	0	3	0	0	logfile
✔	8BMD	16118	2024-12-29	2022-11-10	2.8	2.93	2.78	2.8	0.004	0.60	0.0	0.04	16.85	0.00	2.030	9.24	1.77	1.8	98.2	0.0	0.48	0.83	0.86	2.79	2.8	0.003	0.54	0.0	0.04	16.80	0.00	2.033	9.87	2.13	1.2	98.8	0.0	1.29	0.22	0.84	0.87	2.46	55532	7336	42	0	42	1184	0	logfile
✔	8BMQ	16121	2024-12-28	2022-11-10	3.6	3.94	3.58	4.0	0.006	0.76	0.0	0.05	15.48	0.00	2.190	7.37	0.00	5.5	94.5	0.0	-0.07	0.72	0.81	2.32	3.9	0.006	0.65	0.0	0.05	15.96	0.00	2.151	7.18	1.80	6.5	93.5	0.0	0.34	0.33	0.69	0.81	1.62	7784	987	6	0	3	0	0	logfile

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