Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HEZ	34705	2024-12-27	2022-11-09	2.8	2.66	2.63	2.8	0.015	2.20	2.0	0.09	13.75	0.00	2.144	5.35	2.82	2.6	97.2	0.2	-2.33	0.51	0.78	4.26	2.8	0.003	0.65	0.0	0.04	14.86	0.00	2.226	7.45	1.01	2.8	97.2	0.0	2.32	1.21	0.63	0.84	3.60	4739	611	3	0	3	4	0	logfile
✔	8BL8	16103	2024-12-30	2022-11-09	3.21	3.58	3.34	3.5	0.004	0.62	1.0	0.05	13.41	0.00	2.239	3.51	0.06	2.5	97.5	0.0	0.16	0.70	0.84	3.38	3.5	0.003	0.57	0.0	0.04	14.77	0.00	2.534	4.68	2.71	2.2	97.8	0.0	0.92	0.37	0.70	0.85	3.06	14019	1656	20	0	25	0	0	logfile
✔	8F32	28829	2024-12-30	2022-11-09	3.71	3.36	3.64	3.4	0.005	0.84	0.0	0.06	13.43	0.01	2.201	12.25	0.00	4.3	95.7	0.0	-1.60	0.61	0.79	3.14	3.4	0.004	0.84	1.0	0.05	16.05	0.00	2.205	9.33	3.93	4.0	95.9	0.1	0.10	0.44	0.63	0.80	3.26	12545	1535	10	0	5	0	0	logfile
✔	8HF5	34713	2024-12-28	2022-11-09	2.9	3.54	3.39	3.4	0.011	1.38	7.0	0.10	14.89	0.01	2.063	7.39	3.74	5.4	93.9	0.6	-1.78	0.70	0.85	2.12	3.4	0.003	0.65	0.0	0.04	16.72	0.00	2.003	5.07	1.82	4.5	95.4	0.1	1.51	1.31	0.70	0.86	1.29	8918	1126	4	0	4	0	0	logfile
✔	8BLA	16104	2024-12-28	2022-11-09	3.3	3.52	3.36	3.5	0.004	0.65	0.0	0.05	15.40	0.00	2.234	4.01	0.00	1.4	98.6	0.0	-1.26	0.67	0.83	4.32	3.5	0.003	0.60	0.0	0.05	15.73	0.00	2.598	5.69	3.27	2.9	97.1	0.0	-1.39	0.40	0.63	0.81	3.48	9400	1055	20	0	30	0	0	logfile
✔	8BLB	16105	2024-12-28	2022-11-09	3.3	3.54	3.32	3.6	0.004	0.66	0.0	0.05	15.18	0.00	2.171	3.36	0.00	1.4	98.6	0.0	-0.87	0.66	0.81	3.63	3.6	0.003	0.65	0.0	0.05	15.50	0.00	2.355	5.96	4.55	2.6	97.4	0.0	-1.47	1.25	0.64	0.82	2.93	9400	1055	20	0	30	0	0	logfile
✔	8HF2	34710	2024-12-27	2022-11-09	4.14	5.08	4.11	4.8	0.012	1.04	0.0	0.05	14.20	0.00	2.264	15.84	0.00	5.1	94.9	0.0	-4.39	0.57	0.77	—	4.7	0.003	0.75	0.0	0.04	13.61	0.00	2.491	11.57	0.00	2.5	97.5	0.0	0.37	2.68	0.50	0.79	—	4660	600	5	0	0	0	0	logfile
✔	8F3D	28846	2024-12-29	2022-11-09	3.4	2.64	3.48	3.3	0.005	0.93	0.0	0.05	13.03	0.01	1.784	21.50	0.39	9.3	90.7	0.0	-1.29	0.57	0.62	0.97	2.6	0.004	0.88	1.0	0.05	16.77	0.01	1.203	14.02	5.60	10.1	89.8	0.0	-1.86	2.65	0.59	0.67	1.19	57846	7464	18	0	6	0	0	logfile
✔	8F34	28831	2024-12-30	2022-11-09	3.12	2.66	3.35	2.9	0.005	0.77	0.0	0.06	14.08	0.00	2.333	6.69	0.00	6.6	93.4	0.0	-0.75	0.62	0.80	3.31	2.9	0.005	0.65	0.0	0.05	16.31	0.00	2.508	6.85	2.40	5.2	94.8	0.0	-0.18	0.76	0.61	0.83	3.30	12545	1535	10	0	5	0	0	logfile
✔	8HF7	34715	2024-12-28	2022-11-09	3.8	4.66	1.82	4.2	0.006	1.34	2.0	0.07	14.02	0.01	2.294	7.91	0.61	5.9	93.5	0.6	-3.03	0.63	0.74	0.62	4.3	0.003	0.81	0.0	0.04	16.20	0.00	2.455	13.30	2.63	6.1	93.7	0.2	0.23	0.58	0.64	0.77	0.49	8978	1126	4	0	26	0	0	logfile
✔	8BL2	16100	2024-12-29	2022-11-09	2.3	2.29	2.26	2.2	0.005	0.59	0.0	0.04	16.84	0.00	1.872	11.53	1.01	1.2	98.8	0.0	0.70	0.76	0.75	3.19	2.2	0.003	0.58	0.0	0.04	16.55	0.00	1.940	12.09	1.72	1.1	98.9	0.0	1.01	1.05	0.82	0.86	4.08	57128	7336	42	0	42	2780	0	logfile
✔	8F33	28830	2024-12-30	2022-11-09	3.28	3.02	3.48	3.0	0.005	0.80	0.0	0.06	13.62	0.01	2.359	6.24	0.00	3.9	96.1	0.0	-1.40	0.66	0.81	4.00	3.0	0.004	0.57	0.0	0.05	14.98	0.00	2.487	7.21	1.38	4.6	95.4	0.0	0.13	0.76	0.68	0.84	3.74	12545	1535	10	0	5	0	0	logfile
✔	8HF1	34708	2024-12-26	2022-11-09	3.7	4.36	4.14	4.0	0.004	0.64	0.0	0.04	14.78	0.00	1.893	14.18	0.02	4.8	95.2	0.0	-0.15	0.80	0.79	0.89	4.0	0.003	0.68	0.0	0.04	16.74	0.00	2.493	10.37	1.31	3.2	96.8	0.0	0.45	0.64	0.80	0.80	0.76	42379	5075	13	60	0	0	0	logfile
✔	8BLF	16109	2024-12-29	2022-11-09	3.9	3.71	3.78	3.5	0.004	0.68	0.0	0.04	13.76	0.00	2.210	9.55	0.00	1.4	98.6	0.0	0.29	0.80	0.79	1.52	3.5	0.003	0.60	0.0	0.04	14.89	0.00	2.534	10.69	1.06	1.6	98.4	0.0	1.04	0.35	0.80	0.78	1.09	54376	7343	28	0	14	0	0	logfile
✔	8BLC	16106	2024-12-29	2022-11-09	2.7	2.79	2.65	2.7	0.005	0.51	0.0	0.04	17.03	0.00	2.062	11.39	1.44	0.9	99.1	0.0	1.13	0.81	0.83	2.54	2.7	0.002	0.49	0.0	0.04	17.00	0.00	2.001	9.68	0.78	1.2	98.8	0.0	1.35	1.00	0.82	0.86	2.44	55646	7336	42	0	42	1298	0	logfile
✔	8BLE	16108	2024-12-29	2022-11-09	4.0	3.95	4.02	3.7	0.005	0.85	0.0	0.05	13.61	0.00	2.221	8.82	0.00	1.8	98.2	0.0	-0.61	0.82	0.80	—	3.7	0.004	0.64	0.0	0.04	14.38	0.00	2.321	12.42	1.36	1.5	98.5	0.0	0.73	0.37	0.81	0.80	—	54474	7350	28	0	14	0	0	logfile
✔	8HF4	34712	2024-12-28	2022-11-09	2.8	3.66	3.29	3.5	0.006	0.75	1.0	0.05	14.96	0.00	2.207	5.73	1.11	4.7	94.9	0.4	2.04	0.73	0.86	1.86	3.5	0.002	0.54	0.0	0.04	16.54	0.00	2.510	4.35	1.82	4.0	96.0	0.0	2.40	0.95	0.71	0.85	1.87	8916	1126	4	0	2	0	0	logfile
✔	8F35	28832	2024-12-30	2022-11-09	3.17	2.86	3.36	3.0	0.005	0.75	0.0	0.05	14.23	0.01	2.235	9.63	0.00	8.9	91.1	0.0	-1.03	0.60	0.79	2.87	3.0	0.002	0.51	0.0	0.04	15.74	0.00	2.562	7.14	1.53	4.8	95.2	0.0	0.34	0.83	0.60	0.82	3.35	12525	1535	5	0	0	0	0	logfile
✔	8BL7	16102	2024-12-29	2022-11-09	4.4	4.06	4.17	3.8	0.004	0.78	0.0	0.05	13.65	0.00	2.270	7.33	0.00	1.5	98.5	0.0	-0.37	0.83	0.78	—	3.9	0.003	0.57	0.0	0.04	13.25	0.00	2.395	10.50	0.00	1.6	98.4	0.0	1.10	0.33	0.83	0.78	—	54474	7350	28	0	14	0	0	logfile
✔	8BLD	16107	2024-12-29	2022-11-09	4.4	4.20	4.38	3.9	0.004	0.77	0.0	0.05	13.60	0.00	2.174	12.39	0.00	1.8	98.2	0.0	0.34	0.83	0.77	—	3.9	0.003	0.63	0.0	0.04	13.28	0.00	2.334	11.68	0.02	2.2	97.8	0.0	0.96	1.05	0.83	0.78	—	54376	7343	28	0	14	0	0	logfile

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