Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HBF	34627	2024-12-28	2022-10-28	3.1	3.32	—	3.3	0.010	0.84	1.0	0.05	15.94	0.01	1.951	9.76	0.46	3.2	96.6	0.2	-0.23	0.73	0.82	2.61	3.3	0.003	0.59	0.0	0.04	16.08	0.00	2.019	7.54	2.16	2.6	97.4	0.0	1.24	0.30	0.73	0.83	2.49	8448	1095	4	0	6	0	0	logfile
✔	8BGS	16035	2024-12-27	2022-10-28	3.16	3.15	2.98	3.3	0.009	1.64	0.0	0.10	13.08	0.01	2.368	1.46	0.00	6.8	93.2	0.0	-3.72	0.43	0.86	5.04	3.3	0.006	0.79	0.0	0.05	15.30	0.00	2.594	4.39	2.16	5.9	94.1	0.0	-2.87	1.29	0.36	0.81	3.75	4018	525	7	0	0	0	0	logfile
✔	8BGW	16041	2024-12-30	2022-10-28	2.2	1.96	2.24	2.2	0.016	2.06	2.0	0.09	19.30	0.02	1.923	16.69	3.84	6.1	93.4	0.5	-3.60	0.68	0.80	5.25	2.2	0.005	0.82	0.0	0.04	16.31	0.00	1.825	14.97	1.02	4.1	95.9	0.0	1.02	0.39	0.76	0.84	4.64	12927	1500	6	0	25	449	0	logfile
✔	8BG6	16024	2024-12-27	2022-10-27	4.11	4.22	3.92	4.2	0.006	0.94	0.0	0.06	12.58	0.01	2.348	6.39	0.00	6.9	93.1	0.0	-0.90	0.73	0.80	—	4.1	0.003	0.65	0.0	0.04	12.71	0.00	2.602	4.91	0.00	4.8	95.2	0.0	-0.15	0.95	0.74	0.84	—	3124	398	4	0	1	0	0	logfile
✔	8EYK	28691	2024-12-31	2022-10-27	2.7	3.20	2.66	3.0	0.013	1.00	0.0	0.05	16.76	0.00	2.171	10.91	1.25	2.1	97.9	0.0	0.16	0.76	0.82	3.29	3.0	0.004	0.63	0.0	0.04	16.52	0.00	2.412	9.48	1.91	1.8	98.2	0.0	0.08	0.27	0.76	0.82	3.16	15386	2036	4	0	6	0	0	logfile
✔	8HB0	34610	2024-12-27	2022-10-27	2.9	2.62	2.75	2.7	0.015	2.22	4.0	0.09	13.36	0.00	2.153	6.66	0.80	3.9	95.9	0.2	-2.30	0.57	0.82	3.78	2.7	0.003	0.67	0.0	0.04	14.77	0.00	2.247	8.22	1.40	1.3	98.7	0.0	2.16	0.48	0.61	0.82	3.83	4778	615	3	0	3	4	0	logfile
✔	8EYi	28690	2024-12-31	2022-10-27	2.7	3.30	2.69	3.1	0.017	0.98	0.0	0.05	16.32	0.01	2.204	10.69	2.06	2.0	98.0	0.0	0.27	0.80	0.81	2.89	3.1	0.005	0.63	0.0	0.04	16.26	0.00	2.386	9.02	2.12	2.0	98.0	0.0	0.43	1.06	0.80	0.82	3.09	16252	2172	4	0	4	0	0	logfile
✔	8BG9	16027	2024-12-27	2022-10-27	3.5	3.74	2.80	4.2	0.008	1.46	0.0	0.09	14.96	0.01	2.484	12.17	12.50	17.1	80.0	2.9	-5.16	0.38	0.79	4.51	4.1	0.004	0.69	0.0	0.05	15.71	0.00	2.604	5.47	5.36	8.6	91.4	0.0	-4.02	0.98	0.38	0.81	5.38	1692	222	6	0	0	0	0	logfile
✔	8HAG	34588	2024-12-31	2022-10-26	3.2	3.77	3.22	2.6	0.003	0.56	0.0	0.03	24.83	0.00	2.220	10.62	0.00	1.7	98.3	0.0	2.13	0.85	0.78	0.67	2.2	0.003	0.59	0.0	0.03	26.29	0.00	2.417	9.16	1.00	2.0	98.0	0.0	2.26	1.47	0.89	0.87	1.66	16367	1284	11	294	0	0	0	logfile
✔	8HAi	34591	2024-12-31	2022-10-26	4.7	4.54	4.59	4.0	0.003	0.58	0.0	0.03	24.52	0.00	2.249	10.79	0.00	1.5	98.5	0.0	1.74	0.83	0.72	—	4.0	0.004	0.66	0.0	0.04	26.20	0.00	2.246	15.30	0.09	2.6	97.4	0.0	1.43	1.68	0.86	0.80	—	16547	1310	11	294	0	0	0	logfile
✔	8HAK	34594	2024-12-31	2022-10-26	4.5	4.61	4.45	3.6	0.003	0.65	0.0	0.04	24.74	0.00	2.214	12.85	0.00	2.2	97.8	0.0	0.55	0.87	0.75	—	3.6	0.004	0.67	0.0	0.04	26.28	0.00	2.362	12.42	0.00	2.6	97.4	0.0	0.89	0.78	0.89	0.81	—	16342	1285	11	292	0	0	0	logfile
✔	8HAT	34608	2024-12-31	2022-10-26	3.03	3.41	3.20	3.4	0.009	1.51	21.0	0.08	19.56	0.01	1.173	39.65	5.43	16.5	79.2	4.3	-4.89	0.53	0.58	0.77	3.4	0.003	0.84	0.0	0.05	18.81	0.01	2.432	12.53	5.37	13.8	85.5	0.6	-3.53	1.66	0.55	0.63	0.74	16967	2206	6	0	0	0	0	logfile
✔	8HAL	34595	2024-12-31	2022-10-26	4.4	3.43	4.32	3.4	0.003	0.63	0.0	0.04	24.76	0.00	2.187	12.41	0.00	1.7	98.3	0.0	1.26	0.85	0.73	—	2.9	0.003	0.68	0.0	0.04	26.53	0.00	2.311	13.06	0.00	2.6	97.4	0.0	0.84	2.69	0.87	0.79	—	16585	1292	11	302	0	0	0	logfile
✔	8HAU	34609	2024-12-31	2022-10-26	3.02	3.24	3.04	3.3	0.006	0.62	8.0	0.05	17.46	0.01	1.876	23.57	0.46	2.0	98.0	0.0	0.97	0.58	0.65	0.40	3.3	0.002	0.57	0.0	0.04	17.24	0.00	2.523	4.67	3.22	2.5	97.5	0.0	-0.21	1.65	0.63	0.76	1.69	16157	2080	12	0	6	0	0	logfile
✔	8HA0	34585	2024-12-29	2022-10-26	2.62	2.14	2.52	2.0	0.005	0.78	2.0	0.05	13.58	0.01	1.689	11.43	4.53	2.2	97.2	0.6	-0.68	0.76	0.78	2.69	2.0	0.004	0.63	0.0	0.04	15.71	0.00	2.491	4.44	3.02	3.7	96.0	0.3	1.54	1.53	0.79	0.83	4.07	9385	1155	7	0	7	0	0	logfile
✔	8HAF	34587	2024-12-29	2022-10-26	3.25	2.28	3.09	2.2	0.003	0.82	0.0	0.07	16.06	0.00	1.671	7.15	0.40	2.8	97.2	0.0	0.83	0.70	0.74	2.25	2.1	0.004	0.81	0.0	0.07	16.35	0.00	1.673	6.01	3.19	3.6	96.4	0.0	0.97	0.52	0.77	0.80	3.04	9681	1167	7	0	17	0	0	logfile
✔	8HAS	34607	2024-12-31	2022-10-26	2.89	3.13	2.97	3.1	0.009	1.23	5.0	0.06	20.79	0.01	2.141	9.91	6.98	3.9	95.7	0.4	-1.95	0.67	0.78	1.50	3.1	0.005	0.85	1.0	0.05	18.84	0.00	2.156	5.79	4.52	5.6	94.2	0.1	-1.56	1.17	0.64	0.78	2.18	16640	2141	12	0	6	0	0	logfile
✔	8HAN	34597	2024-12-31	2022-10-26	4.2	4.31	4.16	3.4	0.003	0.54	0.0	0.03	24.99	0.00	2.219	8.41	0.00	1.1	98.9	0.0	2.88	0.83	0.72	—	2.9	0.003	0.62	0.0	0.04	26.62	0.00	2.465	11.70	0.00	2.4	97.6	0.0	2.15	0.81	0.86	0.79	—	16180	1261	11	294	0	0	0	logfile
✔	8EY2	28666	2024-12-27	2022-10-26	3.5	3.71	3.55	3.8	0.003	0.60	0.0	0.04	13.04	0.00	2.149	14.08	0.00	5.8	94.2	0.0	-0.29	0.78	0.80	2.62	3.8	0.003	0.72	0.0	0.04	15.86	0.00	2.442	12.75	1.83	6.4	93.6	0.0	-0.98	1.12	0.79	0.81	2.22	4908	634	4	0	0	0	0	logfile
✔	8EX9	28655	2024-12-27	2022-10-25	2.96	3.27	3.00	3.2	0.003	0.49	0.0	0.03	24.07	0.00	2.200	13.65	0.79	4.3	95.7	0.0	-1.52	0.60	0.71	4.83	3.2	0.006	0.68	0.0	0.04	24.01	0.00	2.471	12.07	4.76	6.8	93.2	0.0	-1.31	0.25	0.63	0.73	4.32	4199	166	4	139	0	0	0	logfile

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